EY711063

Overview
NameEY711063
Unique NameEY711063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIO1_SYNY3 (Thioredoxin-like protein slr0233 OS=Synechocystis sp. (strain PCC 6803) GN=slr0233 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.723e-13
Identity = 32/78 (41.03%), Postives = 49/78 (62.82%), Query Frame = 3
Query:  318 SEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEV 551
            + F   +  S +PVLV+F A WCGPC+++AP +E +      ++ VVKID D  P +  +Y++  LPTL+L + GQ V
Sbjct:    8 ANFAEMLAGSPKPVLVDFYATWCGPCQMMAPILEQVGSHLRQQIQVVKIDTDKYPAIATQYQIQSLPTLVLFKQGQPV 85          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIO_LISMO (Thioredoxin OS=Listeria monocytogenes GN=trxA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.270e-12
Identity = 35/84 (41.67%), Postives = 54/84 (64.29%), Query Frame = 3
Query:  300 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEV 551
            + EIT++ F      SE  VL +F A WCGPCR+VAP +E + +E G+ L +VK+D D NP+    + V  +PTL++ ++G+ V
Sbjct:    2 VKEITDATFEQET--SEGLVLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVV 83          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIO_LISIN (Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.270e-12
Identity = 35/84 (41.67%), Postives = 54/84 (64.29%), Query Frame = 3
Query:  300 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEV 551
            + EIT++ F      SE  VL +F A WCGPCR+VAP +E + +E G+ L +VK+D D NP+    + V  +PTL++ ++G+ V
Sbjct:    2 VKEITDATFEQET--SEGLVLTDFWATWCGPCRMVAPVLEEIQEERGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVV 83          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIO1_CHLTE (Thioredoxin-1 OS=Chlorobium tepidum GN=trx1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.658e-12
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 3
Query:  345 SERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQ 545
            SE PV ++F A+WCGPC++VAP+V+ LA E+  RL VVK++ D  P     ++V G+P L+L   GQ
Sbjct:   12 SELPVFIDFWADWCGPCKMVAPSVKQLASEFKGRLIVVKVNVDQQPDAAARFQVQGIPALMLFVGGQ 78          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIO_STAHJ (Thioredoxin OS=Staphylococcus haemolyticus (strain JCSC1435) GN=trxA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.166e-12
Identity = 36/103 (34.95%), Postives = 61/103 (59.22%), Query Frame = 3
Query:  300 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEVPESXREGAITKLKLKEYID 608
            I ++T+S F   +    +  LV+F A WCGPC+++AP +E LA +Y  +  ++K+D D NP    +++V  +PTLI+ ++G+ V +    G   K  L E +D
Sbjct:    3 IVKVTDSNFDENIQSGVK--LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVV--GFQPKENLAEVLD 101          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIO_HELPY (Thioredoxin OS=Helicobacter pylori GN=trxA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.166e-12
Identity = 36/104 (34.62%), Postives = 63/104 (60.58%), Query Frame = 3
Query:  306 EITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEVPESXREGAITKLKLKEYIDTLL 617
            E+TE  F +T+ K     LV+F A WCGPC++++P ++ LA EY  +  + K++ D   +L  ++ +  +PTL+  ++G+ V +    G  TK+ LKE ++ LL
Sbjct:    6 ELTEENFESTIKKGV--ALVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDEQEELSAKFGIRSIPTLLFTKDGEVVHQLV--GVQTKVALKEQLNKLL 105          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIO_HELPJ (Thioredoxin OS=Helicobacter pylori J99 GN=trxA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.166e-12
Identity = 36/104 (34.62%), Postives = 63/104 (60.58%), Query Frame = 3
Query:  306 EITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEVPESXREGAITKLKLKEYIDTLL 617
            E+TE  F +T+ K     LV+F A WCGPC++++P ++ LA EY  +  + K++ D   +L  ++ +  +PTL+  ++G+ V +    G  TK+ LKE ++ LL
Sbjct:    6 ELTEENFESTIKKGV--ALVDFWAPWCGPCKMLSPVIDELASEYEGKAKICKVNTDEQEELSAKFGIRSIPTLLFTKDGEVVHQLV--GVQTKVALKEQLNKLL 105          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIO_STAS1 (Thioredoxin OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=trxA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.829e-12
Identity = 31/84 (36.90%), Postives = 54/84 (64.29%), Query Frame = 3
Query:  300 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEV 551
            I ++T+S F + +       LV+F A WCGPC+++AP +E LA +Y  +  ++K+D D NP    +++V  +PTLI+ ++G+ V
Sbjct:    3 IVKVTDSNFDDNIQSGVN--LVDFWATWCGPCKMIAPVLEELAGDYDGKANILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPV 84          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIOT_DROME (Thioredoxin-T OS=Drosophila melanogaster GN=TrxT PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.825e-12
Identity = 27/69 (39.13%), Postives = 47/69 (68.12%), Query Frame = 3
Query:  336 VLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNG 542
            +L  ++ V+++F A+WCGPC+++AP ++ LA EY DR+ V+K++ D N  +  EY V  +PT +  + G
Sbjct:   16 ILAEDKLVVIDFYADWCGPCKIIAPKLDELAHEYSDRVVVLKVNVDENEDITVEYNVNSMPTFVFIKGG 84          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIO2_CHLTE (Thioredoxin-2 OS=Chlorobium tepidum GN=trx2 PE=3 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 6.302e-12
Identity = 32/101 (31.68%), Postives = 58/101 (57.43%), Query Frame = 3
Query:  306 EITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEVPESXREGAITKLKLKEYID 608
            E T+  F   +L S++  LV+F A WCGPC ++ P +E LA +Y  +  + K++ D NP    +Y +  +PT+++ + G+ V +    GA+ K  + + +D
Sbjct:    7 EATDQNFQAEILNSDKVALVDFWAAWCGPCMMLGPVIEELAGDYEGKAIIAKLNVDENPNTAGQYGIRSIPTMLIIKGGKVVDQMV--GALPKNMIAKKLD 105          
The following BLAST results are available for this feature:
BLAST of EY711063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
THIO1_SYNY39.723e-1341.03Thioredoxin-like protein slr0233 OS=Synechocystis ... [more]
THIO_LISMO1.270e-1241.67Thioredoxin OS=Listeria monocytogenes GN=trxA PE=3... [more]
THIO_LISIN1.270e-1241.67Thioredoxin OS=Listeria innocua GN=trxA PE=3 SV=1[more]
THIO1_CHLTE1.658e-1247.76Thioredoxin-1 OS=Chlorobium tepidum GN=trx1 PE=3 S... [more]
THIO_STAHJ2.166e-1234.95Thioredoxin OS=Staphylococcus haemolyticus (strain... [more]
THIO_HELPY2.166e-1234.62Thioredoxin OS=Helicobacter pylori GN=trxA PE=3 SV... [more]
THIO_HELPJ2.166e-1234.62Thioredoxin OS=Helicobacter pylori J99 GN=trxA PE=... [more]
THIO_STAS12.829e-1236.90Thioredoxin OS=Staphylococcus saprophyticus subsp.... [more]
THIOT_DROME4.825e-1239.13Thioredoxin-T OS=Drosophila melanogaster GN=TrxT P... [more]
THIO2_CHLTE6.302e-1231.68Thioredoxin-2 OS=Chlorobium tepidum GN=trx2 PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-003-D02-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711063 ID=EY711063; Name=EY711063; organism=Citrus sinensis; type=EST; length=865bp
CCACGCGTCCGACAATTCAAAAAGAAAAGAAAATGCTCTAAAAATCTTTA
ATCACTTGCAAAATGGATATCGTCTTCTCCAACTCCACTTTATTGTTCAG
ACAACAACCACTGGTTGCTCCTGTTCGTACAGTTACTGGGACCCACAGGC
AACAGAACATCATCACCAGCGCTACAACAACAACAACGTCGTCAAAGAAT
CAGCTATTGTTCGGGTCTCGAACGAACCTCTCACTAAAGTCTTATAATAA
TTCGCTTCCCAAGTTGGCAATACGCGTACGCTGCGGTGCTAGCAGTGGCA
TAACGGAGATTACCGAAAGTGAGTTCCCAAACACGGTCTTGAAATCTGAG
CGTCCGGTTCTTGTCGAGTTCGTGGCCAATTGGTGCGGTCCTTGCCGCTT
GGTTGCTCCCGCCGTCGAATGGCTCGCCCAGGAATACGGAGACAGATTGA
CTGTCGTAAAGATTGATCATGACGCAAACCCACAACTAATAGAGGAATAC
AAAGTTTATGGATTGCCGACCTTGATTCTCTTNCAGAATGGACAGGAAGT
TCCGGAAAGCANGAGGGAAGGTGCAATTACTAAGTTGAAGCTTAAAGAGT
ATATTGATACTCTTTTAGAATCAATCTCAGTGGCTTTAGCCCTCTTTTGA
CATGCTCAGCAAATTATGCTCGTTCTTTCACAGATTTTGACATCATTGGC
AAAGACGAATATGGGTAAATATTTACTTTTTCCNTATGNAAATCTGNNNA
TCATCGTACAGNATCCGTGGATGNNATCAATGNATAAATTTGATCTATGT
ACCAAGATATCATACCTAATTTCTGATATCCAACGGGCACATTGGNTTTT
CAAAAAAAAAAAAAA
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