EY711062

Overview
NameEY711062
Unique NameEY711062
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711062 vs. ExPASy Swiss-Prot
Match: PHR_HALSA (Deoxyribodipyrimidine photo-lyase OS=Halobacterium salinarium GN=phr PE=3 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 3.375e-25
Identity = 57/168 (33.93%), Postives = 91/168 (54.17%), Query Frame = 2
Query:   41 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLRE-YSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRI 541
            LSPHL FG + +R V+   R  +     +  +   E+V  F+  +  RE Y++ + FN     E     +     W  D    +AW+ G TGYP+VDAGMR+L A  ++H+R+R++V++F  K L + WR G  +F + L D D  +D  GWQ+ + T  D + + R+
Sbjct:  243 LSPHLKFGTIGIRTVYEAARAAKSDADTDDER---ENVAAFIGQLAWREFYAQVLYFNQNVVSEN-FKAYEHPIEWRDDPAALQAWKDGETGYPIVDAGMRQLRAEAYMHNRVRMIVAAFLTKDLLVDWRAGYDWFREKLADHDTANDNGGWQWAASTGTDAQPYFRV 406          

HSP 2 Score: 30.8018 bits (68), Expect = 3.375e-25
Identity = 10/31 (32.26%), Postives = 21/31 (67.74%), Query Frame = 1
Query:  544 HPQFEGYKFDPNGEYVRRWLPELARLPTEWI 636
            +P  +G ++DP+ +Y+  ++PEL  +P + I
Sbjct:  408 NPMTQGERYDPDADYITEFVPELRDVPADAI 438          
BLAST of EY711062 vs. ExPASy Swiss-Prot
Match: PHR_SYNP6 (Deoxyribodipyrimidine photo-lyase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=phr PE=1 SV=4)

HSP 1 Score: 103.605 bits (257), Expect = 1.639e-24
Identity = 52/153 (33.99%), Postives = 85/153 (55.56%), Query Frame = 2
Query:   41 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQY 499
            LSP L FG + +R+ +   R    + A   +     S+ ++ + +  RE+ ++  ++ P   + P     + F W   E  F AW Q +TGYP+VDA MR+L  TGW+H+R  ++V+SF  K L + WR G ++F   L+D DL ++  GWQ+
Sbjct:  243 LSPALKFGAIGIRQAW---RAASAAHALSRSDEARNSIRVWQQELAWREFYQHALYHFPSLADGPYRSLWQQFPWENREALFTAWTQAQTGYPIVDAAMRQLTETGWMHNRCWMIVASFLTKDLIIDWRRGEQFFMQHLVDGDLAANNGGWQW 392          

HSP 2 Score: 30.8018 bits (68), Expect = 1.639e-24
Identity = 11/23 (47.83%), Postives = 15/23 (65.22%), Query Frame = 1
Query:  544 HPQFEGYKFDPNGEYVRRWLPEL 612
            +P  +  KFD    Y++RWLPEL
Sbjct:  407 NPASQAKKFDATATYIKRWLPEL 429          
BLAST of EY711062 vs. ExPASy Swiss-Prot
Match: PHR_THET8 (Deoxyribodipyrimidine photo-lyase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=phr PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.783e-24
Identity = 60/167 (35.93%), Postives = 88/167 (52.69%), Query Frame = 2
Query:   41 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRI 541
            LSP+   G +S R           +W  E  + G E    ++  +  R++S ++ ++ P+  ERPL    + F W  DE  F+AW +G+TG PLVDA MREL ATG+L +R R+  + F VK L LPW+   + F   LLD D   +  GWQ+  G   D   + R+
Sbjct:  212 LSPYFALGVLSPRLA---------AW--EAERRGGEGARKWVAELLWRDFSYHLLYHFPWMAERPLDPRFQAFPWQEDEALFQAWYEGKTGVPLVDAAMRELHATGFLSNRARMNAAQFAVKHLLLPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRV 367          

HSP 2 Score: 29.261 bits (64), Expect = 2.783e-24
Identity = 9/22 (40.91%), Postives = 15/22 (68.18%), Query Frame = 1
Query:  544 HPQFEGYKFDPNGEYVRRWLPE 609
            +P  +G + DP G +++RW PE
Sbjct:  369 NPVLQGERHDPEGRWLKRWAPE 390          
BLAST of EY711062 vs. ExPASy Swiss-Prot
Match: PHR_THET2 (Deoxyribodipyrimidine photo-lyase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=phr PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 4.714e-24
Identity = 60/167 (35.93%), Postives = 87/167 (52.10%), Query Frame = 2
Query:   41 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRI 541
            LSP+   G +S R           +W  E  + G E    ++  +  R++S ++ ++ P+  ERPL    +   W  DE  F+AW +GRTG PLVDA MREL ATG+L +R R+  + F VK L LPW+   + F   LLD D   +  GWQ+  G   D   + R+
Sbjct:  212 LSPYFALGVLSPRLA---------AW--EAERRGGEGARKWVAELLWRDFSYHLLYHFPWMAERPLDPRFQALPWQEDEALFRAWYEGRTGVPLVDAAMRELHATGFLSNRARMNAAQFAVKHLLLPWKRCEEAFRHLLLDGDRAVNLQGWQWAGGLGVDAAPYFRV 367          

HSP 2 Score: 29.261 bits (64), Expect = 4.714e-24
Identity = 9/22 (40.91%), Postives = 15/22 (68.18%), Query Frame = 1
Query:  544 HPQFEGYKFDPNGEYVRRWLPE 609
            +P  +G + DP G +++RW PE
Sbjct:  369 NPVLQGERHDPEGRWLKRWAPE 390          
BLAST of EY711062 vs. ExPASy Swiss-Prot
Match: CRYD_SYNY3 (Cryptochrome DASH OS=Synechocystis sp. (strain PCC 6803) GN=cry PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.769e-22
Identity = 59/170 (34.71%), Postives = 91/170 (53.53%), Query Frame = 2
Query:   44 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHL--KFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDI 547
            SP L  G +S R ++  V+        E  +  ++S +  +  +  R++ R+++    Y ++    G L  K F W  D+  F+ WR G+TGYPLVDA MREL  TG++ +R R  V+SF  K L + WRWG ++F   L+D D+ S+   W Y +G   D R F   +I
Sbjct:  253 SPWLALGCLSPRFIYQEVK------RYEQERVSNDSTHWLIFELLWRDFFRFVA--QKYGNKLFNRGGLLNKNFPWQEDQVRFELWRSGQTGYPLVDANMRELNLTGFMSNRGRQNVASFLCKNLGIDWRWGAEWFESCLIDYDVCSNWGNWNYTAGIGNDARDFRYFNI 414          

HSP 2 Score: 34.6538 bits (78), Expect = 1.769e-22
Identity = 13/27 (48.15%), Postives = 18/27 (66.67%), Query Frame = 1
Query:  556 EGYKFDPNGEYVRRWLPELARLPTEWI 636
            +  ++DP G Y+R WLPEL  LP + I
Sbjct:  417 QSQQYDPQGTYLRHWLPELKNLPGDKI 443          

HSP 3 Score: 20.4014 bits (41), Expect = 1.769e-22
Identity = 8/23 (34.78%), Postives = 12/23 (52.17%), Query Frame = 3
Query:  642 PWKCPKSGLQAAGMELGSHYPFP 710
            PW    +  +  G++LG  YP P
Sbjct:  446 PWLLSATEQKQWGVQLGVDYPRP 468          
BLAST of EY711062 vs. ExPASy Swiss-Prot
Match: PHR_BUCBP (Deoxyribodipyrimidine photo-lyase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=phrB PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.440e-22
Identity = 55/177 (31.07%), Postives = 89/177 (50.28%), Query Frame = 2
Query:   41 LSPHLHFGEVSVRKVFHLV---------RIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKF-FSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRI 541
            LS HL  G +S R+   L+         ++++  W NE               +  RE+ +++ + +P   +   L H +    W  +  Y   W+QG TGYP++DAGMR+L   GW+ +R+R++ +SF VK L + WR G +YF   L+D D  S+   WQ+I+    D   + RI
Sbjct:  242 LSAHLSIGVISPRQCVTLLFKEYPDIIHKLEECKWINE---------------LLWREFYQHLLYFYPNIGQNQSLYHWENRIKWDNNLYYLNLWKQGNTGYPIIDAGMRQLKQLGWISNRLRMITASFLVKNLLIDWRKGEEYFMSQLIDGDFASNNGNWQWIASVGTDSMPYFRI 403          

HSP 2 Score: 30.8018 bits (68), Expect = 2.440e-22
Identity = 10/28 (35.71%), Postives = 20/28 (71.43%), Query Frame = 1
Query:  544 HPQFEGYKFDPNGEYVRRWLPELARLPT 627
            +P  +  KFD N +++R+++PEL+ + T
Sbjct:  405 NPMLQSKKFDINAKFIRKYIPELSNVST 432          
BLAST of EY711062 vs. ExPASy Swiss-Prot
Match: CRYD_RHOBA (Cryptochrome DASH OS=Rhodopirellula baltica GN=cry PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.090e-21
Identity = 59/165 (35.76%), Postives = 85/165 (51.52%), Query Frame = 2
Query:   44 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFS--WVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAF 532
            SP L  G +S R +   VR        E  +  ++S    +  +  R+Y R++S  H  +  R   G L+  +  W  D   F+ W+ G TGYPLVDA MREL  TG++ +R R  V+SF  K L + WRWG ++F   L+D D+ S+   W Y +G   D R F
Sbjct:  250 SPWLAQGCLSPRMIADHVR------RYEEERVKNKSTYWMIFELLWRDYFRWISRKHGATLFRA--GGLRGVNVDWKSDRELFRRWQDGTTGYPLVDANMRELRTTGYMSNRGRQNVASFLTKNLGIDWRWGARWFESQLVDYDVASNYGNWNYAAGVGNDARGF 406          

HSP 2 Score: 27.7202 bits (60), Expect = 1.090e-21
Identity = 10/18 (55.56%), Postives = 12/18 (66.67%), Query Frame = 1
Query:  568 FDPNGEYVRRWLPELARL 621
            +D  GEY + WLPEL  L
Sbjct:  418 YDSQGEYAKHWLPELRDL 435          

HSP 3 Score: 26.1794 bits (56), Expect = 1.090e-21
Identity = 10/24 (41.67%), Postives = 11/24 (45.83%), Query Frame = 3
Query:  642 PWKCPKSGLQAAGMELGSHYPFPL 713
            PWK      Q  G  LG  YP P+
Sbjct:  443 PWKMSPERQQEVGATLGKEYPHPI 466          
BLAST of EY711062 vs. ExPASy Swiss-Prot
Match: CRY1_AEDAE (Cryptochrome-1 OS=Aedes aegypti GN=cry PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.443e-20
Identity = 50/163 (30.67%), Postives = 85/163 (52.15%), Query Frame = 2
Query:   41 LSPHLHFGEVSVRKVFHLVR--IKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHE---RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK-VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGT 511
            +S  L FG +SVR  +  V    ++V   N+    G + +      +  REY   MS ++P+  E    P+  ++ ++    D      W++GRTG+P++DA MR+L A GWLH  +R + ++F  +  L + W  G+++F   LLDAD    A  W ++S +
Sbjct:  265 MSAALRFGCLSVRMFYWCVHDLYEKVQANNQYRNPGGQHIT---GQLIWREYFYTMSVHNPHYAEMEANPICLNIPWYEPKDDS--LDRWKEGRTGFPMIDAAMRQLLAEGWLHHILRNITATFLTRGALWISWEAGVQHFLKYLLDADWSVCAGNWMWVSSS 422          

HSP 2 Score: 37.7354 bits (86), Expect = 2.443e-20
Identity = 15/24 (62.50%), Postives = 19/24 (79.17%), Query Frame = 1
Query:  565 KFDPNGEYVRRWLPELARLPTEWI 636
            + DP GEYVRR+LPEL  LPT ++
Sbjct:  442 RLDPKGEYVRRYLPELKNLPTLYV 465          

HSP 3 Score: 25.0238 bits (53), Expect = 2.443e-20
Identity = 12/44 (27.27%), Postives = 18/44 (40.91%), Query Frame = 3
Query:  642 PWKCPKSGLQAAGMELGSHYPFPLKRIGAPKCGVDQTLSKCGHK 773
            PWK P    +  G  +G  YP P+  + A       T++    K
Sbjct:  468 PWKAPLDVQKECGCIVGRDYPAPMIDLAAASRANANTMNSIRQK 511          
BLAST of EY711062 vs. ExPASy Swiss-Prot
Match: CRYD_SOLLC (Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum lycopersicum GN=CRYD PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.766e-20
Identity = 57/170 (33.53%), Postives = 86/170 (50.59%), Query Frame = 2
Query:   44 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKF---------FSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGR 526
            SP L  G +S R ++  V+        E  +  ++S    L  +  R+Y R++S           L +L F          +W  D+  F AWR+G+TGYPL+DA M+EL ATG++ +R R +V SF V+ + + WR G ++F   LLD D  S+   W Y +G   D R
Sbjct:  341 SPWLASGSLSPRFIYEEVK------RYEKERLSNDSTYWVLFELIWRDYFRFLSIK---------LANLLFQAGGPQKVNINWSQDQTMFDAWRRGQTGYPLIDANMKELAATGYMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 495          

HSP 2 Score: 33.8834 bits (76), Expect = 2.766e-20
Identity = 13/25 (52.00%), Postives = 16/25 (64.00%), Query Frame = 1
Query:  556 EGYKFDPNGEYVRRWLPELARLPTE 630
            +   +DP GE+V  WLPEL  LP E
Sbjct:  505 QAQNYDPEGEFVAYWLPELRALPRE 529          
BLAST of EY711062 vs. ExPASy Swiss-Prot
Match: CRYD_ORYSJ (Cryptochrome DASH, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=CRYD PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.029e-19
Identity = 57/163 (34.97%), Postives = 85/163 (52.15%), Query Frame = 2
Query:   44 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFS--WVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGR 526
            SP L  G +S R +   V+        E  +  ++S    L  +  R+Y R++S    Y +    LG  +     W  D+  F++WR GRTGYPL+DA M+EL ATG++ +R R +V SF V+ + + WR G ++F   LLD D  S+   W Y +G   D R
Sbjct:  351 SPWLASGSLSPRYICEEVK------RYEKQRIANDSTYWVLFELIWRDYFRFISAK--YGNSIFHLGGPRNVESKWSQDQALFESWRDGRTGYPLIDANMKELLATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPASNYGNWTYGAGVGNDPR 505          

HSP 2 Score: 31.5722 bits (70), Expect = 1.029e-19
Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 1
Query:  568 FDPNGEYVRRWLPELARLPTE 630
            +DP+GEYV  WLPEL  +  E
Sbjct:  519 YDPDGEYVAYWLPELRSIAKE 539          
The following BLAST results are available for this feature:
BLAST of EY711062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
PHR_HALSA3.375e-2533.93Deoxyribodipyrimidine photo-lyase OS=Halobacterium... [more]
PHR_SYNP61.639e-2433.99Deoxyribodipyrimidine photo-lyase OS=Synechococcus... [more]
PHR_THET82.783e-2435.93Deoxyribodipyrimidine photo-lyase OS=Thermus therm... [more]
PHR_THET24.714e-2435.93Deoxyribodipyrimidine photo-lyase OS=Thermus therm... [more]
CRYD_SYNY31.769e-2234.71Cryptochrome DASH OS=Synechocystis sp. (strain PCC... [more]
PHR_BUCBP2.440e-2231.07Deoxyribodipyrimidine photo-lyase OS=Buchnera aphi... [more]
CRYD_RHOBA1.090e-2135.76Cryptochrome DASH OS=Rhodopirellula baltica GN=cry... [more]
CRY1_AEDAE2.443e-2030.67Cryptochrome-1 OS=Aedes aegypti GN=cry PE=3 SV=1[more]
CRYD_SOLLC2.766e-2033.53Cryptochrome DASH, chloroplastic/mitochondrial OS=... [more]
CRYD_ORYSJ1.029e-1934.97Cryptochrome DASH, chloroplastic/mitochondrial OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-003-D01-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711062 ID=EY711062; Name=EY711062; organism=Citrus sinensis; type=EST; length=891bp
CCACGCGTCCGCCCACGCGTCCGGTGCTACAACCTCATTTCTCTCTCCAC
ATTTGCATTTTGGGGAGGTTAGTGTGAGGAAAGTCTTCCATCTTGTCCGC
ATCAAGCAGGTTTCATGGGCCAATGAAGGGAACAAGGCTGGTGATGAGAG
TGTGAACTTGTTTCTCAAGTCAATTGGTCTTCGGGAATATTCAAGGTACA
TGAGTTTTAACCATCCTTACAGTCATGAAAGGCCTCTTCTTGGGCACCTT
AAGTTCTTTTCTTGGGTTGTGGATGAGGGCTATTTTAAGGCATGGAGGCA
AGGTAGAACTGGTTATCCACTGGTGGATGCTGGCATGAGAGAGTTGTGGG
CCACTGGTTGGCTTCATGATCGGATACGAGTAGTAGTTTCTAGTTTCTTT
GTAAAAGTTCTACAGCTTCCATGGAGATGGGGGATGAAATATTTTTGGGA
TACCCTCTTGGATGCAGATTTAGAAAGTGATGCTCTTGGTTGGCAGTACA
TATCCGGTACTATCCCTGATGGCCGTGCTTTTGACCGAATTGACATCCAC
AGTTTGAGGGTTACAAGTTTGACCCCAATGGAGAATATGTACGACGGTGG
CTCCCTGAACTTGCCAGACTGCCCACTGAATGGATACCCACCCATGGAAA
TGCCCAAAGTCTGGGCTCCAAGCTGCTGGAATGGAACTGGGGTCCCATTA
CCCTTTTCCCCTAAAACGGATTGGCGCCCCAAAATGCGGGGTGGACCAAA
CCCTTTCAAAATGTGGGCACAAAGAAACACCTTCCAAACCTTCATTTTAA
AAGGAACTGAGGAAAGGCCTTGGAAACTCCCTTTGATTCACCCCCAATTG
TCCTTTCCCCCGGAAAATAAAAGGGGGAGAAACCCCCAACA
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