EY711062

Overview
NameEY711062
Unique NameEY711062
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711062 vs. ExPASy Swiss-Prot
Match: CRYD_DANRE (Cryptochrome DASH OS=Danio rerio GN=cry-dash PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 5.486e-19
Identity = 53/163 (32.52%), Postives = 83/163 (50.92%), Query Frame = 2
Query:   44 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHL--KFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGR 526
            SP L  G +S R ++  ++  +V       +  ++S    +  +  R+Y ++++    Y +    +  L  K   W  D   F AW++GRTG P VDA MREL  TG++ +R R  V+SF  K L L WR G ++F   L+D D+ S+   W Y +G   D R
Sbjct:  256 SPWLALGCISPRYIYEQIKKYEVE------RTANQSTYWVIFELLWRDYFKFVALK--YGNRIFYMNGLQDKHVPWNTDMKMFDAWKEGRTGVPFVDANMRELALTGFMSNRGRQNVASFLTKDLGLDWRLGAEWFEYLLVDHDVCSNYGNWLYSAGIGNDPR 410          

HSP 2 Score: 32.3426 bits (72), Expect = 5.486e-19
Identity = 11/19 (57.89%), Postives = 16/19 (84.21%), Query Frame = 1
Query:  556 EGYKFDPNGEYVRRWLPEL 612
            +G  +D NG+YVR+W+PEL
Sbjct:  420 QGLDYDNNGDYVRQWVPEL 438          

HSP 3 Score: 23.8682 bits (50), Expect = 5.486e-19
Identity = 14/35 (40.00%), Postives = 17/35 (48.57%), Query Frame = 3
Query:  633 DTH-PWKCPKSGLQAAGMELGSHYPFPLKRIGAPK 734
            D H PW    S L  A + L   YP P+  I AP+
Sbjct:  445 DVHTPWTLSNSALSHAQVSLNQTYPCPI--ITAPE 477          
BLAST of EY711062 vs. ExPASy Swiss-Prot
Match: CRYD_ARATH (Cryptochrome DASH, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=CRYD PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 6.476e-19
Identity = 57/166 (34.34%), Postives = 83/166 (50.00%), Query Frame = 2
Query:   44 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKF-----FSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGR 526
            SP L FG +S R ++  V+        E  +  + S    L  +  R+Y R++S     S     L HL         W  D+  F++WR  +TGYPL+DA M+EL  TG++ +R R +V SF V+ + L WR G ++F   LLD D  S+   W Y +G   D R
Sbjct:  333 SPWLAFGCISPRFIYEEVQ------RYEKERVANNSTYWVLFELIWRDYFRFLSIKCGNS-----LFHLGGPRNVQGKWSQDQKLFESWRDAKTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGLDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPR 487          

HSP 2 Score: 33.113 bits (74), Expect = 6.476e-19
Identity = 13/25 (52.00%), Postives = 16/25 (64.00%), Query Frame = 1
Query:  556 EGYKFDPNGEYVRRWLPELARLPTE 630
            +   +DP GEYV  WL +L RLP E
Sbjct:  497 QAQNYDPEGEYVAFWLQQLRRLPKE 521          
BLAST of EY711062 vs. ExPASy Swiss-Prot
Match: CRYD_NATPD (Cryptochrome DASH OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=cry PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 7.134e-19
Identity = 43/134 (32.09%), Postives = 65/134 (48.51%), Query Frame = 2
Query:  125 EGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGR 526
            E  +  +E     +  +  R++ ++    +  +  +P     +   W  D   F+ W  G TG P VDA MREL  TG++ +R R  V+SF   VL + WRWG  YF   L+D D+ S+   W Y +G   D R
Sbjct:  270 EDERVANEDTYWLVFELAWRDFFQFQFEKYGATFFKPGGIRERNIDWDRDRALFERWADGETGVPFVDANMRELNRTGYMSNRGRQNVASFLAGVLGIDWRWGAAYFEARLIDYDVASNWGNWAYQAGVGNDSR 403          

HSP 2 Score: 31.187 bits (69), Expect = 7.134e-19
Identity = 11/20 (55.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:  565 KFDPNGEYVRRWLPELARLP 624
            ++D + EY+  WLPELA LP
Sbjct:  415 RYDSDAEYITTWLPELAALP 434          

HSP 3 Score: 25.409 bits (54), Expect = 7.134e-19
Identity = 11/29 (37.93%), Postives = 17/29 (58.62%), Query Frame = 3
Query:  642 PWKCPKSGLQAAGMELGSHYPFPLKRIGA 728
            PW+  ++  +  G+ELG  YP P+  I A
Sbjct:  441 PWQLSEAEQREYGVELGVDYPEPVVDIDA 469          
BLAST of EY711062 vs. ExPASy Swiss-Prot
Match: CRY1_CULQU (Cryptochrome-1 OS=Culex quinquefasciatus GN=cry PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.005e-18
Identity = 50/161 (31.06%), Postives = 78/161 (48.45%), Query Frame = 2
Query:   41 LSPHLHFGEVSVRKVFHLVR--IKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWV-VDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK-VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGT 511
            +S  L FG +SVR  +  V     +V   N+    G   +      +  REY   MS ++P+     L        W    +     W++GRTG+PL+DA MR+L A GWLH  +R + ++F  +  L + W  G+++F   LLDAD    A  W ++S +
Sbjct:  219 MSAALRFGCLSVRMFYWCVHDLFARVQANNQLKHPGGHHIT---GQLIWREYFYTMSVHNPHYAVMELNPICLNIPWYEAKDDSLDRWKEGRTGFPLIDAAMRQLMAEGWLHHILRNITATFLTRGGLWISWEAGVQHFLKYLLDADWSVCAGNWMWVSSS 376          

HSP 2 Score: 33.8834 bits (76), Expect = 2.005e-18
Identity = 12/24 (50.00%), Postives = 18/24 (75.00%), Query Frame = 1
Query:  565 KFDPNGEYVRRWLPELARLPTEWI 636
            + DP GEYV+R+LPEL + P  ++
Sbjct:  396 RLDPKGEYVKRYLPELEKFPALYV 419          

HSP 3 Score: 25.7942 bits (55), Expect = 2.005e-18
Identity = 11/37 (29.73%), Postives = 17/37 (45.95%), Query Frame = 3
Query:  642 PWKCPKSGLQAAGMELGSHYPFPLKRIG-APKCGVDQ 749
            PWK P    +  G  +G  YP P+  +    KC  ++
Sbjct:  422 PWKAPPELQEQYGCVIGKDYPAPMVNLAEVNKCNANK 458          
BLAST of EY711062 vs. ExPASy Swiss-Prot
Match: CRY1_ANOGA (Cryptochrome-1 OS=Anopheles gambiae GN=Cry1 PE=2 SV=4)

HSP 1 Score: 75.0998 bits (183), Expect = 3.352e-18
Identity = 52/173 (30.06%), Postives = 88/173 (50.87%), Query Frame = 2
Query:   41 LSPHLHFGEVSVRKVFHLVR--IKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHE---RPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK-VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRI 541
            +S  L FG +SVR  +  V     +V   ++    G   +      +  REY   MS  +P+  E    P+  ++ ++    ++     W++GRTG+P++DA MR+L A GWLH  +R + ++F  +  L L W  G+++F   LLDAD    A  W ++S +     AF+R+
Sbjct:  266 MSAALRFGCLSVRMFYWCVHDLFAKVQSNSQFKYPGGHHIT---GQLIWREYFYTMSVQNPHYGEMERNPICLNIPWYK--PEDDSLTRWKEGRTGFPMIDAAMRQLLAEGWLHHILRNITATFLTRGGLWLSWEEGLQHFLKYLLDADWSVCAGNWMWVSSS-----AFERL 428          

HSP 2 Score: 35.039 bits (79), Expect = 3.352e-18
Identity = 12/24 (50.00%), Postives = 19/24 (79.17%), Query Frame = 1
Query:  565 KFDPNGEYVRRWLPELARLPTEWI 636
            + DP G+YV+R+LPELA  P +++
Sbjct:  443 RLDPKGDYVKRYLPELANYPAQFV 466          

HSP 3 Score: 22.7126 bits (47), Expect = 3.352e-18
Identity = 16/65 (24.62%), Postives = 25/65 (38.46%), Query Frame = 3
Query:  642 PWKCPKSGLQAAGMELGSHYPFPL-------KRIGAPKCGVDQTLSKCGHKETPSKPSF*KELRK 815
            PWK  +      G  +G  YP P+       KR       + + L   G      +PS  +E+R+
Sbjct:  469 PWKASREQQIEYGCVIGEKYPAPMVDLAIVSKRNAHTMASLREKLVDGGSTPPHCRPSDIEEIRQ 533          
BLAST of EY711062 vs. ExPASy Swiss-Prot
Match: PHR_BUCAI (Deoxyribodipyrimidine photo-lyase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=phrB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.632e-18
Identity = 45/121 (37.19%), Postives = 71/121 (58.68%), Query Frame = 2
Query:  182 REYSRYMSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRI 541
            RE+  ++    P  S    L+   K   W+ +  +F AW++G TG+P++DAGMR+L   GW+H+R+R++ SSF VK L + WR G ++F   L+D DL  +  GWQ+ +    D   + RI
Sbjct:  282 REFYYHLLIGFPKISRSESLVTWEKEIHWINNIKHFNAWKEGNTGFPIIDAGMRQLNELGWMHNRLRMITSSFLVKNLLINWREGEEHFISNLIDGDLALNNGGWQWSASVGCDSVPYIRI 402          
BLAST of EY711062 vs. ExPASy Swiss-Prot
Match: CRY1_DROPS (Cryptochrome-1 OS=Drosophila pseudoobscura pseudoobscura GN=cry PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.074e-18
Identity = 57/171 (33.33%), Postives = 80/171 (46.78%), Query Frame = 2
Query:   41 LSPHLHFGEVSVRKVFHLVR--IKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVV-DEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK-VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRI 541
            +S HL FG +SVR+ +  V    + V  A        E        +  REY   MS N+P               W   DE   + WR G+TG+PL+D  MR+L A GWLH  +R  V++F  +  L   W  G+K+F   LLDAD    A  W ++S +     AF+R+
Sbjct:  266 MSAHLRFGCLSVRRFYWSVHDLFENVQLAACVRGVQIEGGAHITGQLIWREYFYTMSVNNPNYDRMEGNEICLTIPWAKPDENLLQRWRLGQTGFPLIDGAMRQLLAEGWLHHTLRNTVATFLTRGGLWQSWEPGLKHFLKYLLDADWSVCAGNWMWVSSS-----AFERL 431          

HSP 2 Score: 34.6538 bits (78), Expect = 4.074e-18
Identity = 13/24 (54.17%), Postives = 18/24 (75.00%), Query Frame = 1
Query:  565 KFDPNGEYVRRWLPELARLPTEWI 636
            + DP G Y+RR++PEL  LP E+I
Sbjct:  446 RLDPEGVYIRRYVPELKNLPKEYI 469          
BLAST of EY711062 vs. ExPASy Swiss-Prot
Match: PHR_YEAST (Deoxyribodipyrimidine photo-lyase, mitochondrial OS=Saccharomyces cerevisiae GN=PHR1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.293e-18
Identity = 46/134 (34.33%), Postives = 72/134 (53.73%), Query Frame = 2
Query:  143 DESVNLFLKSIGLREYSRYMSFNHPY-SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRI 541
            + S   F+K +  R++ R+   N PY S   P         W  +   F+ W  G TG P+VDA MR+L  TG++++R R++ +SF  K L + WRWG ++F   L+D D  S+  GW + S T  D + + R+
Sbjct:  375 NSSTQNFIKEVAWRDFYRHCMCNWPYTSMGMPYRLDTLDIKWENNPVAFEKWCTGNTGIPIVDAIMRKLLYTGYINNRSRMITASFLSKNLLIDWRWGERWFMKHLIDGDSSSNVGGWGFCSSTGIDAQPYFRV 508          

HSP 2 Score: 25.0238 bits (53), Expect = 5.293e-18
Identity = 8/16 (50.00%), Postives = 13/16 (81.25%), Query Frame = 1
Query:  565 KFDPNGEYVRRWLPEL 612
            K+DP   +V++W+PEL
Sbjct:  517 KYDPQMIFVKQWVPEL 532          
BLAST of EY711062 vs. ExPASy Swiss-Prot
Match: CRYD_XENLA (Cryptochrome DASH OS=Xenopus laevis GN=cry-dash PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.624e-17
Identity = 54/163 (33.13%), Postives = 80/163 (49.08%), Query Frame = 2
Query:   44 SPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHL--KFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGR 526
            +P L  G VS R ++  +         E  +  ++S    +  +  R+Y R+++    Y      L  L  K   W  D   F AW++GRTG P VDA MREL  TG++ +R R  V+SF  K L + WR G ++F   L+D D+ S+   W Y +G   D R
Sbjct:  257 APWLALGCVSPRYIYEQIG------KYEKERTANQSTYWVIFELLWRDYFRFVALK--YGRRIFFLRGLQDKDIPWKRDPKLFDAWKEGRTGVPFVDANMRELAMTGFMSNRGRQNVASFLTKDLGIDWRMGAEWFEYLLVDYDVCSNYGNWLYSAGIGNDPR 411          

HSP 2 Score: 32.3426 bits (72), Expect = 5.624e-17
Identity = 24/91 (26.37%), Postives = 38/91 (41.76%), Query Frame = 1
Query:  556 EGYKFDPNGEYVRRWLPELARLP-----TEWIPTHGNAQSLGSKLLEWNWGPITLFP--*NGLAPQNAG-WTKPFQNVGTKKHLPNLHFKR 804
            +G  +D  G+Y+R W+PEL ++      T W  ++ +       L E    PI + P     +  + AG W K  +      H P  H  R
Sbjct:  421 QGLDYDSGGDYIRLWVPELQQIKGGDAHTPWALSNASLAHANLSLGETYPYPIVMAPEWSRHINQKPAGSWEKSARRGKGPSHTPKQHKNR 511          
BLAST of EY711062 vs. ExPASy Swiss-Prot
Match: CRY1_CHICK (Cryptochrome-1 OS=Gallus gallus GN=CRY1 PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 3.490e-16
Identity = 47/156 (30.13%), Postives = 72/156 (46.15%), Query Frame = 2
Query:   41 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK-VLQLPWRWGMKYFWDTLLDADLESDALGWQYIS 505
            LSP+L FG +S R    L   K      +  K     ++L+ + +  RE+    + N+P   +           W  +      W +GRTG+P +DA M +L   GW+H   R  V+ F  +  L + W  GMK F + LLDAD   +A  W ++S
Sbjct:  251 LSPYLRFGCLSCR----LFYFKLTDLYKKVKKNSSPPLSLYGQLLW-REFFYTAATNNPRFDKMEGNPICVQIPWDKNPEALAKWAEGRTGFPWIDAIMTQLRQEGWIHHLARHAVACFLTRGDLWISWEEGMKVFEELLLDADWSVNAGSWMWLS 401          

HSP 2 Score: 35.039 bits (79), Expect = 3.490e-16
Identity = 15/32 (46.88%), Postives = 21/32 (65.62%), Query Frame = 1
Query:  559 GYKFDPNGEYVRRWLPELARLPTEWIPTHGNA 654
            G + DPNG+Y+RR+LP L   P ++I    NA
Sbjct:  419 GRRTDPNGDYIRRYLPVLRGFPAKYIYDPWNA 450          

HSP 3 Score: 26.1794 bits (56), Expect = 3.490e-16
Identity = 10/24 (41.67%), Postives = 15/24 (62.50%), Query Frame = 3
Query:  642 PWKCPKSGLQAAGMELGSHYPFPL 713
            PW  P+S  +AA   +G +YP P+
Sbjct:  447 PWNAPESVQKAAKCVIGVNYPKPM 470          
The following BLAST results are available for this feature:
BLAST of EY711062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
CRYD_DANRE5.486e-1932.52Cryptochrome DASH OS=Danio rerio GN=cry-dash PE=2 ... [more]
CRYD_ARATH6.476e-1934.34Cryptochrome DASH, chloroplastic/mitochondrial OS=... [more]
CRYD_NATPD7.134e-1932.09Cryptochrome DASH OS=Natronomonas pharaonis (strai... [more]
CRY1_CULQU2.005e-1831.06Cryptochrome-1 OS=Culex quinquefasciatus GN=cry PE... [more]
CRY1_ANOGA3.352e-1830.06Cryptochrome-1 OS=Anopheles gambiae GN=Cry1 PE=2 S... [more]
PHR_BUCAI3.632e-1837.19Deoxyribodipyrimidine photo-lyase OS=Buchnera aphi... [more]
CRY1_DROPS4.074e-1833.33Cryptochrome-1 OS=Drosophila pseudoobscura pseudoo... [more]
PHR_YEAST5.293e-1834.33Deoxyribodipyrimidine photo-lyase, mitochondrial O... [more]
CRYD_XENLA5.624e-1733.13Cryptochrome DASH OS=Xenopus laevis GN=cry-dash PE... [more]
CRY1_CHICK3.490e-1630.13Cryptochrome-1 OS=Gallus gallus GN=CRY1 PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-003-D01-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711062 ID=EY711062; Name=EY711062; organism=Citrus sinensis; type=EST; length=891bp
CCACGCGTCCGCCCACGCGTCCGGTGCTACAACCTCATTTCTCTCTCCAC
ATTTGCATTTTGGGGAGGTTAGTGTGAGGAAAGTCTTCCATCTTGTCCGC
ATCAAGCAGGTTTCATGGGCCAATGAAGGGAACAAGGCTGGTGATGAGAG
TGTGAACTTGTTTCTCAAGTCAATTGGTCTTCGGGAATATTCAAGGTACA
TGAGTTTTAACCATCCTTACAGTCATGAAAGGCCTCTTCTTGGGCACCTT
AAGTTCTTTTCTTGGGTTGTGGATGAGGGCTATTTTAAGGCATGGAGGCA
AGGTAGAACTGGTTATCCACTGGTGGATGCTGGCATGAGAGAGTTGTGGG
CCACTGGTTGGCTTCATGATCGGATACGAGTAGTAGTTTCTAGTTTCTTT
GTAAAAGTTCTACAGCTTCCATGGAGATGGGGGATGAAATATTTTTGGGA
TACCCTCTTGGATGCAGATTTAGAAAGTGATGCTCTTGGTTGGCAGTACA
TATCCGGTACTATCCCTGATGGCCGTGCTTTTGACCGAATTGACATCCAC
AGTTTGAGGGTTACAAGTTTGACCCCAATGGAGAATATGTACGACGGTGG
CTCCCTGAACTTGCCAGACTGCCCACTGAATGGATACCCACCCATGGAAA
TGCCCAAAGTCTGGGCTCCAAGCTGCTGGAATGGAACTGGGGTCCCATTA
CCCTTTTCCCCTAAAACGGATTGGCGCCCCAAAATGCGGGGTGGACCAAA
CCCTTTCAAAATGTGGGCACAAAGAAACACCTTCCAAACCTTCATTTTAA
AAGGAACTGAGGAAAGGCCTTGGAAACTCCCTTTGATTCACCCCCAATTG
TCCTTTCCCCCGGAAAATAAAAGGGGGAGAAACCCCCAACA
back to top