EY710998

Overview
NameEY710998
Unique NameEY710998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length896
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY710998 vs. ExPASy Swiss-Prot
Match: NOX4_MOUSE (NADPH oxidase 4 OS=Mus musculus GN=Nox4 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.557e-13
Identity = 49/172 (28.49%), Postives = 82/172 (47.67%), Query Frame = 3 
Query:   39 VCMAKGAAETLKFNMALILLPVCRNTITWLRNKTKLGGVVP-------FDDNLNFHKVIALGISIGVGIHAISHLACDFPRLINASEEKYE-PMEPYFGDQPKNYWHFVKSVEGVTGIVMVVLMAIAFTLATPWFRRXXXXXXXXXXXXTGFNAFWYSHHLFVIVYTLLIVH 530
            +C+++ +A  L  N +LILLP+CR  + +LR   K    VP        D +   H    + I I  G+H  +HL       +N SE+  E     Y  + P+       ++ G+TG+ MVV++ +  T +T   R             + ++ FWY+H+LF + Y LL++H
Sbjct:   54 LCLSRASASVLNLNCSLILLPMCRTVLAYLRGSQK----VPSRRTRRLLDKSKTLHITCGVTICIFSGVHVAAHLVNALNFSVNYSEDFLELNAARYQNEDPRKL--LFTTIPGLTGVCMVVVLFLMVTASTYAIR------------VSNYDIFWYTHNLFFVFYMLLLLH 207
[Close]
BLAST of EY710998 vs. ExPASy Swiss-Prot
Match: NOX4_RAT (NADPH oxidase 4 OS=Rattus norvegicus GN=Nox4 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.765e-12
Identity = 49/172 (28.49%), Postives = 80/172 (46.51%), Query Frame = 3 
Query:   39 VCMAKGAAETLKFNMALILLPVCRNTITWLRNKTKLGGVVP-------FDDNLNFHKVIALGISIGVGIHAISHLACDFPRLINASEEKYE-PMEPYFGDQPKNYWHFVKSVEGVTGIVMVVLMAIAFTLATPWFRRXXXXXXXXXXXXTGFNAFWYSHHLFVIVYTLLIVH 530
            +C+++ +A  L  N +LILLP+CR  + +LR   K    VP        D +   H    + I I  G+H  +HL       +N SE         Y  + P+       +V G+TG+ MVV++ +  T +T   R             + ++ FWY+H+LF + Y LL++H
Sbjct:   54 LCLSRASASVLNLNCSLILLPMCRTVLAYLRGSQK----VPSRRTRRLLDKSKTLHITCGITICIFSGVHVAAHLVNALNFSVNYSEHFLALNAARYQNEDPRKL--LFTTVPGLTGVCMVVVLFLMVTASTYAIR------------VSNYDIFWYTHNLFFVFYMLLLLH 207
The following BLAST results are available for this feature:
BLAST of EY710998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
NOX4_MOUSE3.557e-1328.49NADPH oxidase 4 OS=Mus musculus GN=Nox4 PE=1 SV=1[more]
NOX4_RAT1.765e-1228.49NADPH oxidase 4 OS=Rattus norvegicus GN=Nox4 PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-002-E08-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710998 ID=EY710998; Name=EY710998; organism=Citrus sinensis; type=EST; length=896bp
CCACGCGTCCGCGGACGCGTGGGCGGACGCGTGGGTGCGTGTGCATGGCC
AAAGGTGCTGCTGAGACGCTAAAATTCAACATGGCTCTGATTTTATTACC
CGTCTGTCGAAACACCATTACATGGCTCAGAAACAAGACCAAACTCGGTG
GCGTTGTTCCATTTGACGACAACCTCAATTTCCACAAGGTGATAGCACTT
GGAATCTCAATTGGGGTCGGAATACATGCTATTTCACATTTAGCATGCGA
TTTCCCTCGGCTTATAAATGCAAGTGAAGAGAAGTATGAGCCAATGGAGC
CATATTTTGGGGATCAGCCCAAAAATTACTGGCATTTTGTGAAGTCAGTA
GAAGGGGTAACTGGGATTGTGATGGTTGTTCTGATGGCTATCGCCTTCAC
ACTTGCAACCCCATGGTTCCGGAGAAACAAGCTCAATTTGCCAAAGCCGT
TAAAGAAGCTCACTGGGTTCAATGCCTTTTGGTATTCTCATCACCTTTTT
GTCATCGTTTACACCCTGCTCATTGTGCATGGCCAATACCTTTACTTGAC
CAAAAAATGGTACAAGAAGACGACATGGATGTACTTGGCAATTCCAATTT
GTCTTTATGCCACTGAGCGGTTGATTAGGGCACTGAGGTCAAGCATTAAG
GCAGTTTCCATACAAAAGGTGGCTGTTTATCCTGGAAATGTGCTGGCTCT
TCACATGTCAAAGCCAGATAGATTCAGATACAAGAGCGGGCAGTACATGT
TTGTCAATTGTGCTGCTGTGTCTCCATTCGAATGGCACCCCATTTCANNT
ACTTCTGCCCCGGATGATGACTACCTCAGTNGTCCATTAGAACTCTTGGT
GACTGGACTCGTCACTCAGAACAGTTTCTCAGAGTATGCCGACCAC
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