EY710989

Overview
NameEY710989
Unique NameEY710989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length914
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710989 vs. ExPASy Swiss-Prot
Match: OXAA_ECO24 (Inner membrane protein oxaA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=oxaA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.260e-21
Identity = 63/170 (37.06%), Postives = 85/170 (50.00%), Query Frame = -1
Query:    3 MDIKRTILIVALAIVSYSMVLKWNQDYGQAALPTQNVATNQSAPAIPDTPLGXXXXXXXXXXXXXXDTSTPVETPVVTNKDLIHVKTDVLDLAIDPQGGDIAQLKLPLYPRRQDHPDVPFQLFDNGGERVYLAQSGLTGTDGPDARATG-RPVYSTEQKTYQLADGQNQL 509
            MD +R +L++AL  VS+ +   W QD        Q   T  +A                        ++     P      LI VKTDVLDL I+ +GGD+ Q  LP YP+  +    PFQL +   + +Y AQSGLTG DGPD  A G RP+Y+ E+  Y LA+GQN+L
Sbjct:    1 MDSQRNLLVIALLFVSFMIWQAWEQDKNPQPQAQQTTQTTTTAAG----------------------SAADQGVPASGQGKLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQ-PFQLLETSSQFIYQAQSGLTGRDGPDNPANGPRPLYNVEKDAYVLAEGQNEL 147          
BLAST of EY710989 vs. ExPASy Swiss-Prot
Match: Y3806_PSEAB (UPF0161 protein PA14_38060 OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=PA14_38060 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.645e-21
Identity = 47/69 (68.12%), Postives = 54/69 (78.26%), Query Frame = -2
Query:  551 MRKLALVPIQFYRYAISPLMANHCRFYPSCSCYALEAIENHGLLRGGWLTFRRLGRCHPWNPGGYDPVP 757
            M+ L +  I+FY+YAISPL+   CRFYPSCS Y LEAI  HG LRGG+L  RRL RCHPW+PGGYDPVP
Sbjct:    1 MKFLLIGLIRFYQYAISPLIGPRCRFYPSCSHYTLEAIRVHGALRGGYLGARRLLRCHPWHPGGYDPVP 69          
BLAST of EY710989 vs. ExPASy Swiss-Prot
Match: Y3277_PSEA8 (UPF0161 protein PLES_32771 OS=Pseudomonas aeruginosa (strain LESB58) GN=PLES_32771 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.645e-21
Identity = 47/69 (68.12%), Postives = 54/69 (78.26%), Query Frame = -2
Query:  551 MRKLALVPIQFYRYAISPLMANHCRFYPSCSCYALEAIENHGLLRGGWLTFRRLGRCHPWNPGGYDPVP 757
            M+ L +  I+FY+YAISPL+   CRFYPSCS Y LEAI  HG LRGG+L  RRL RCHPW+PGGYDPVP
Sbjct:    1 MKFLLIGLIRFYQYAISPLIGPRCRFYPSCSHYTLEAIRVHGALRGGYLGARRLLRCHPWHPGGYDPVP 69          
BLAST of EY710989 vs. ExPASy Swiss-Prot
Match: Y2045_PSEAE (UPF0161 protein PA2045 OS=Pseudomonas aeruginosa GN=PA2045 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.645e-21
Identity = 47/69 (68.12%), Postives = 54/69 (78.26%), Query Frame = -2
Query:  551 MRKLALVPIQFYRYAISPLMANHCRFYPSCSCYALEAIENHGLLRGGWLTFRRLGRCHPWNPGGYDPVP 757
            M+ L +  I+FY+YAISPL+   CRFYPSCS Y LEAI  HG LRGG+L  RRL RCHPW+PGGYDPVP
Sbjct:    1 MKFLLIGLIRFYQYAISPLIGPRCRFYPSCSHYTLEAIRVHGALRGGYLGARRLLRCHPWHPGGYDPVP 69          
BLAST of EY710989 vs. ExPASy Swiss-Prot
Match: OXAA_CITK8 (Inner membrane protein oxaA OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=oxaA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.645e-21
Identity = 64/170 (37.65%), Postives = 85/170 (50.00%), Query Frame = -1
Query:    3 MDIKRTILIVALAIVSYSMVLKWNQDYGQAALPTQNVATNQSAPAIPDTPLGXXXXXXXXXXXXXXDTSTPVETPVVTNKDLIHVKTDVLDLAIDPQGGDIAQLKLPLYPRRQDHPDVPFQLFDNGGERVYLAQSGLTGTDGPDARATG-RPVYSTEQKTYQLADGQNQL 509
            MD +R +L++AL  VS+ +   W QD        Q   T  +A                        ++     P      LI VKTDVLDL I+ +GGD+ Q  LP YP+     + PFQL +   + +Y AQSGLTG DGPD  A G RP+YS +  T+ LADGQN+L
Sbjct:    1 MDSQRNLLVIALLFVSFMIWQAWEQDKNPQPQTQQTTQTTTTAAG----------------------SAADQGVPASGQGKLITVKTDVLDLTINTRGGDVEQALLPTYPKELGSKE-PFQLLETTPQFIYQAQSGLTGRDGPDNPANGPRPLYSVDNDTFVLADGQNEL 147          
BLAST of EY710989 vs. ExPASy Swiss-Prot
Match: OXAA_SHISS (Inner membrane protein oxaA OS=Shigella sonnei (strain Ss046) GN=oxaA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.149e-21
Identity = 63/170 (37.06%), Postives = 85/170 (50.00%), Query Frame = -1
Query:    3 MDIKRTILIVALAIVSYSMVLKWNQDYGQAALPTQNVATNQSAPAIPDTPLGXXXXXXXXXXXXXXDTSTPVETPVVTNKDLIHVKTDVLDLAIDPQGGDIAQLKLPLYPRRQDHPDVPFQLFDNGGERVYLAQSGLTGTDGPDARATG-RPVYSTEQKTYQLADGQNQL 509
            MD +R +L++AL  VS+ +   W QD        Q   T  +A                        ++     P      LI VKTDVLDL I+ +GGD+ Q  LP YP+  +    PFQL +   + +Y AQSGLTG DGPD  A G RP+Y+ E+  Y LA+GQN+L
Sbjct:    1 MDSQRNLLVIALLFVSFMIWQAWEQDKNPQPQAQQTTQTTTTAAG----------------------SAADQGVPASGQGKLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQ-PFQLLETSPQFIYQAQSGLTGRDGPDNPANGPRPLYNVEKDAYVLAEGQNEL 147          
BLAST of EY710989 vs. ExPASy Swiss-Prot
Match: OXAA_SHIFL (Inner membrane protein oxaA OS=Shigella flexneri GN=oxaA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.149e-21
Identity = 63/170 (37.06%), Postives = 85/170 (50.00%), Query Frame = -1
Query:    3 MDIKRTILIVALAIVSYSMVLKWNQDYGQAALPTQNVATNQSAPAIPDTPLGXXXXXXXXXXXXXXDTSTPVETPVVTNKDLIHVKTDVLDLAIDPQGGDIAQLKLPLYPRRQDHPDVPFQLFDNGGERVYLAQSGLTGTDGPDARATG-RPVYSTEQKTYQLADGQNQL 509
            MD +R +L++AL  VS+ +   W QD        Q   T  +A                        ++     P      LI VKTDVLDL I+ +GGD+ Q  LP YP+  +    PFQL +   + +Y AQSGLTG DGPD  A G RP+Y+ E+  Y LA+GQN+L
Sbjct:    1 MDSQRNLLVIALLFVSFMIWQAWEQDKNPQPQAQQTTQTTTTAAG----------------------SAADQGVPASGQGKLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQ-PFQLLETSPQFIYQAQSGLTGRDGPDNPANGPRPLYNVEKDAYVLAEGQNEL 147          
BLAST of EY710989 vs. ExPASy Swiss-Prot
Match: OXAA_SHIDS (Inner membrane protein oxaA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=oxaA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.149e-21
Identity = 63/170 (37.06%), Postives = 85/170 (50.00%), Query Frame = -1
Query:    3 MDIKRTILIVALAIVSYSMVLKWNQDYGQAALPTQNVATNQSAPAIPDTPLGXXXXXXXXXXXXXXDTSTPVETPVVTNKDLIHVKTDVLDLAIDPQGGDIAQLKLPLYPRRQDHPDVPFQLFDNGGERVYLAQSGLTGTDGPDARATG-RPVYSTEQKTYQLADGQNQL 509
            MD +R +L++AL  VS+ +   W QD        Q   T  +A                        ++     P      LI VKTDVLDL I+ +GGD+ Q  LP YP+  +    PFQL +   + +Y AQSGLTG DGPD  A G RP+Y+ E+  Y LA+GQN+L
Sbjct:    1 MDSQRNLLVIALLFVSFMIWQAWEQDKNPQPQAQQTTQTTTTAAG----------------------SAADQGVPASGQGKLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQ-PFQLLETSPQFIYQAQSGLTGRDGPDNPANGPRPLYNVEKDAYVLAEGQNEL 147          
BLAST of EY710989 vs. ExPASy Swiss-Prot
Match: OXAA_SHIBS (Inner membrane protein oxaA OS=Shigella boydii serotype 4 (strain Sb227) GN=oxaA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.149e-21
Identity = 63/170 (37.06%), Postives = 85/170 (50.00%), Query Frame = -1
Query:    3 MDIKRTILIVALAIVSYSMVLKWNQDYGQAALPTQNVATNQSAPAIPDTPLGXXXXXXXXXXXXXXDTSTPVETPVVTNKDLIHVKTDVLDLAIDPQGGDIAQLKLPLYPRRQDHPDVPFQLFDNGGERVYLAQSGLTGTDGPDARATG-RPVYSTEQKTYQLADGQNQL 509
            MD +R +L++AL  VS+ +   W QD        Q   T  +A                        ++     P      LI VKTDVLDL I+ +GGD+ Q  LP YP+  +    PFQL +   + +Y AQSGLTG DGPD  A G RP+Y+ E+  Y LA+GQN+L
Sbjct:    1 MDSQRNLLVIALLFVSFMIWQAWEQDKNPQPQAQQTTQTTTTAAG----------------------SAADQGVPASGQGKLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQ-PFQLLETSPQFIYQAQSGLTGRDGPDNPANGPRPLYNVEKDAYVLAEGQNEL 147          
BLAST of EY710989 vs. ExPASy Swiss-Prot
Match: OXAA_SHIB3 (Inner membrane protein oxaA OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=oxaA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.149e-21
Identity = 63/170 (37.06%), Postives = 85/170 (50.00%), Query Frame = -1
Query:    3 MDIKRTILIVALAIVSYSMVLKWNQDYGQAALPTQNVATNQSAPAIPDTPLGXXXXXXXXXXXXXXDTSTPVETPVVTNKDLIHVKTDVLDLAIDPQGGDIAQLKLPLYPRRQDHPDVPFQLFDNGGERVYLAQSGLTGTDGPDARATG-RPVYSTEQKTYQLADGQNQL 509
            MD +R +L++AL  VS+ +   W QD        Q   T  +A                        ++     P      LI VKTDVLDL I+ +GGD+ Q  LP YP+  +    PFQL +   + +Y AQSGLTG DGPD  A G RP+Y+ E+  Y LA+GQN+L
Sbjct:    1 MDSQRNLLVIALLFVSFMIWQAWEQDKNPQPQAQQTTQTTTTAAG----------------------SAADQGVPASGQGKLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQ-PFQLLETSPQFIYQAQSGLTGRDGPDNPANGPRPLYNVEKDAYVLAEGQNEL 147          
The following BLAST results are available for this feature:
BLAST of EY710989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
OXAA_ECO241.260e-2137.06Inner membrane protein oxaA OS=Escherichia coli O1... [more]
Y3806_PSEAB1.645e-2168.12UPF0161 protein PA14_38060 OS=Pseudomonas aerugino... [more]
Y3277_PSEA81.645e-2168.12UPF0161 protein PLES_32771 OS=Pseudomonas aerugino... [more]
Y2045_PSEAE1.645e-2168.12UPF0161 protein PA2045 OS=Pseudomonas aeruginosa G... [more]
OXAA_CITK81.645e-2137.65Inner membrane protein oxaA OS=Citrobacter koseri ... [more]
OXAA_SHISS2.149e-2137.06Inner membrane protein oxaA OS=Shigella sonnei (st... [more]
OXAA_SHIFL2.149e-2137.06Inner membrane protein oxaA OS=Shigella flexneri G... [more]
OXAA_SHIDS2.149e-2137.06Inner membrane protein oxaA OS=Shigella dysenteria... [more]
OXAA_SHIBS2.149e-2137.06Inner membrane protein oxaA OS=Shigella boydii ser... [more]
OXAA_SHIB32.149e-2137.06Inner membrane protein oxaA OS=Shigella boydii ser... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-002-D10-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710989 ID=EY710989; Name=EY710989; organism=Citrus sinensis; type=EST; length=914bp
TTCAACTGGTTCTGGCCGTCAGCCAGTTGATAAGTCTTCTGTTCGGTCGA
ATAAACCGGACGACCGGTAGCACGAGCATCCGGACCGTCAGTACCGGTCA
GGCCACTTTGTGCCAGATATACACGTTCGCCGCCGTTATCGAACAGCTGG
AACGGAACATCCGGGTGGTCTTGGCGACGTGGATACAGCGGCAGTTTCAG
CTGGGCGATGTCACCACCCTGTGGATCGATTGCCAGGTCCAGTACATCCG
TTTTTACATGGATGAGGTCTTTATTGGTGACGACCGGGGTTTCTACCGGG
GTGCTGGTATCGGCATTCGCGCTGGGTACATCGGCACTGGCGGCAGCATT
GTTACCCAGTGGCGTATCCGGAATAGCCGGCGCCGACTGATTGGTAGCAA
CATTCTGAGTCGGCAGGGCAGCTTGGCCATAATCCTGGTTCCACTTAAGA
ACCATAGAGTAGGACACGATTGCCAGGGCGACGATCAGGATCGTGCGTTT
AATATCCATGATTACTCGGCCATCGAAGAAGAACGGGAGGTAGGGATAGG
TGGAACCGGGTCATAACCACCGGGATTCCACGGATGACAGCGACCTAAAC
GACGAAAGGTCAGCCAGCCACCGCGCAGAAGGCCATGATTTTCTATGGCT
TCCAACGCGTAGCAGGAACAACTGGGGTAGAAACGACAGTGATTTGCCAT
CAGGGGACTAATGGCATAGCGGTAAAACTGGATCGGAACGAGGGCCAGTT
TACGCATCAGTACTGTCTACCCCTACAGTTTCNGTGCTGACAGCTGGTGC
TGGCTTGTTTGTACAAGCAAACGTTTCCAGAGCTTGCCGAATCGCTGATC
AATCCGGGGTTTCTACGTCCCCCAGCCTTGCGCGCGACGAAACAATTCCC
ACCACCAGAGTGTC
back to top