EY710989

Overview
NameEY710989
Unique NameEY710989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length914
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710989 vs. ExPASy Swiss-Prot
Match: Y3237_LARHH (UPF0161 protein LHK_03237 OS=Laribacter hongkongensis (strain HLHK9) GN=LHK_03237 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.293e-20
Identity = 39/69 (56.52%), Postives = 51/69 (73.91%), Query Frame = -2
Query:  551 MRKLALVPIQFYRYAISPLMANHCRFYPSCSCYALEAIENHGLLRGGWLTFRRLGRCHPWNPGGYDPVP 757
            M ++ L  I+FY+ AISP +   CR+ P+CS YA+EA++ HG L+GGWL  RR+GRCHPW   GYDPVP
Sbjct:    1 MSRIVLALIRFYQLAISPWLPPRCRYQPTCSQYAIEAVQKHGALKGGWLALRRIGRCHPWGSSGYDPVP 69          
BLAST of EY710989 vs. ExPASy Swiss-Prot
Match: Y2115_ACTSZ (UPF0161 protein Asuc_2115 OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=Asuc_2115 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.912e-20
Identity = 41/71 (57.75%), Postives = 52/71 (73.24%), Query Frame = -2
Query:  548 LMRKLALVPIQFYRYAISPLMANHCRFYPSCSCYALEAIENHGLLRGGWLTFRRLGRCHPWNPGGYDPVPP 760
            L  K+ +  I+FY+  ISPL+   CRF P+CSCY LEAI+ HG +RG WLT +R+ +CHP N GGYDPVPP
Sbjct:    7 LGEKILIKLIRFYQIVISPLIGPRCRFVPTCSCYGLEAIKTHGAVRGAWLTLKRILKCHPLNAGGYDPVPP 77          
BLAST of EY710989 vs. ExPASy Swiss-Prot
Match: Y2530_XANOM (UPF0161 protein XOO2530 OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=XOO2530 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.179e-19
Identity = 44/79 (55.70%), Postives = 56/79 (70.89%), Query Frame = -2
Query:  524 LMRKLALVPIQFYRYAISPLMANHCRFYPSCSCYALEAIENHGLLRGGWLTFRRLGRCHPWNPGGYDPVPPIPTSRSSS 760
            ++ +L +  ++FY+  ISPL+   CRF PSCS YA+ AI   G LRG WL  RRLGRCHP++PGG+DPVP  P S SSS
Sbjct:    9 VISRLLIALLRFYKLFISPLLGPRCRFAPSCSEYAMTAIGRFGPLRGSWLAARRLGRCHPFHPGGFDPVPDAPASPSSS 87          
BLAST of EY710989 vs. ExPASy Swiss-Prot
Match: Y2256_XANCP (UPF0161 protein XCC2256 OS=Xanthomonas campestris pv. campestris GN=XCC2256 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.179e-19
Identity = 44/76 (57.89%), Postives = 54/76 (71.05%), Query Frame = -2
Query:  524 KLALVPIQFYRYAISPLMANHCRFYPSCSCYALEAIENHGLLRGGWLTFRRLGRCHPWNPGGYDPVPPIPTSRSSS 751
            +L +  ++FY+  ISPL+   CRF PSCS YA+ AI   G LRG WL  RRLGRCHP++PGG+DPVP  PTS  SS
Sbjct:   10 RLLIALLRFYKRFISPLLGPRCRFAPSCSEYAMTAIARFGPLRGSWLAARRLGRCHPFHPGGFDPVPDAPTSSPSS 85          
BLAST of EY710989 vs. ExPASy Swiss-Prot
Match: Y1859_XANC8 (UPF0161 protein XC_1859 OS=Xanthomonas campestris pv. campestris (strain 8004) GN=XC_1859 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.179e-19
Identity = 44/76 (57.89%), Postives = 54/76 (71.05%), Query Frame = -2
Query:  524 KLALVPIQFYRYAISPLMANHCRFYPSCSCYALEAIENHGLLRGGWLTFRRLGRCHPWNPGGYDPVPPIPTSRSSS 751
            +L +  ++FY+  ISPL+   CRF PSCS YA+ AI   G LRG WL  RRLGRCHP++PGG+DPVP  PTS  SS
Sbjct:   10 RLLIALLRFYKRFISPLLGPRCRFAPSCSEYAMTAIARFGPLRGSWLAARRLGRCHPFHPGGFDPVPDAPTSSPSS 85          
BLAST of EY710989 vs. ExPASy Swiss-Prot
Match: OXAA_SHEFN (Inner membrane protein oxaA OS=Shewanella frigidimarina (strain NCIMB 400) GN=oxaA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.540e-19
Identity = 63/173 (36.42%), Postives = 86/173 (49.71%), Query Frame = -1
Query:    3 MDIKRTILIVALAIVSYSMVLKWNQDYGQ----AALPTQNVATNQSAPAIPDTPLGXXXXXXXXXXXXXXDTSTPVETPVVTNKDLIHVKTDVLDLAIDPQGGDIAQLKLPLYPRRQDHPDVPFQLFDNGGERVYLAQSGLTGTDGPDARATGRPVYSTEQKTYQLADGQNQL 509
            M+ +R IL++ L  VS+ M  +W  D       A   TQ  A +Q +  +P+  +                +  PVE P   NK+LI VKTD LD+ I P GGDI    L  + R  D  D PF + +      Y+AQSGL G DG D+ A GR  YS +  +Y LADG++ L
Sbjct:    1 MESQRNILLIGLLFVSFLMWQQWQTDKAPKPATAQTVTQTNAASQHSADVPEADI----------------SGVPVELPA--NKNLISVKTDQLDIKISPIGGDIVYAALVEHKREIDSSD-PFVILEQKNNFTYIAQSGLIGRDGIDSSANGRAAYSVQTNSYSLADGKDTL 154          
BLAST of EY710989 vs. ExPASy Swiss-Prot
Match: Y2594_SYNJA (UPF0161 protein CYA_2594 OS=Synechococcus sp. (strain JA-3-3Ab) GN=CYA_2594 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.011e-19
Identity = 40/66 (60.61%), Postives = 50/66 (75.76%), Query Frame = -2
Query:  536 IQFYRYAISPLMANHCRFYPSCSCYALEAIENHGLLRGGWLTFRRLGRCHPWNPGGYDPVPPIPTS 733
            I+ Y+ AISPL+   CR+YP+CS Y LEA+  +G +RG WL  RRL RCHPW+PGGYDPVP +P S
Sbjct:   16 IRGYQVAISPLLPPACRYYPTCSQYTLEAVRRYGAIRGSWLGIRRLCRCHPWHPGGYDPVPDLPGS 81          
BLAST of EY710989 vs. ExPASy Swiss-Prot
Match: Y2522_MOOTA (UPF0161 protein Moth_2522 OS=Moorella thermoacetica (strain ATCC 39073) GN=Moth_2522 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.011e-19
Identity = 42/64 (65.62%), Postives = 50/64 (78.12%), Query Frame = -2
Query:  551 LVPIQFYRYAISPLMANHCRFYPSCSCYALEAIENHGLLRGGWLTFRRLGRCHPWNPGGYDPVP 742
            ++ I+FY+  ISPL+  HCRFYP+CS YALEAI  +GLLRGG L  RRL  CHPW+ GGYDPVP
Sbjct:    7 ILAIRFYQRYISPLLGRHCRFYPTCSQYALEAITKYGLLRGGLLATRRLLHCHPWDAGGYDPVP 70          
BLAST of EY710989 vs. ExPASy Swiss-Prot
Match: Y3115_THEFY (UPF0161 protein Tfu_3115 OS=Thermobifida fusca (strain YX) GN=Tfu_3115 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.627e-19
Identity = 42/71 (59.15%), Postives = 54/71 (76.06%), Query Frame = -2
Query:  548 LMRKLALVPIQFYRYAISPLMANHCRFYPSCSCYALEAIENHGLLRGGWLTFRRLGRCHPWNPGGYDPVPP 760
            L+ ++ ++PI+ Y+  ISPL    CRFYPSCS YA+EA+  HG  RG WLT RRLG+CHP++PGG DPVPP
Sbjct:    8 LLARVLILPIRGYQRWISPLFPPVCRFYPSCSSYAVEALRVHGAGRGLWLTIRRLGKCHPFHPGGLDPVPP 78          
BLAST of EY710989 vs. ExPASy Swiss-Prot
Match: Y004_VIBSL (UPF0161 protein VS_0004 OS=Vibrio splendidus (strain LGP32) GN=VS_0004 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.627e-19
Identity = 39/68 (57.35%), Postives = 54/68 (79.41%), Query Frame = -2
Query:  545 LALVPIQFYRYAISPLMANHCRFYPSCSCYALEAIENHGLLRGGWLTFRRLGRCHPWNPGGYDPVPPI 748
            +AL+PI FYR+ ISPL+   CRF P+CS YA+EA++ HG ++G WL+ +RL +CHP N GG+DPVPP+
Sbjct:   11 IALIPIYFYRWFISPLIGPRCRFTPTCSLYAIEALKAHGFVKGCWLSGKRLLKCHPLNEGGFDPVPPV 78          
The following BLAST results are available for this feature:
BLAST of EY710989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
Y3237_LARHH5.293e-2056.52UPF0161 protein LHK_03237 OS=Laribacter hongkongen... [more]
Y2115_ACTSZ6.912e-2057.75UPF0161 protein Asuc_2115 OS=Actinobacillus succin... [more]
Y2530_XANOM1.179e-1955.70UPF0161 protein XOO2530 OS=Xanthomonas oryzae pv. ... [more]
Y2256_XANCP1.179e-1957.89UPF0161 protein XCC2256 OS=Xanthomonas campestris ... [more]
Y1859_XANC81.179e-1957.89UPF0161 protein XC_1859 OS=Xanthomonas campestris ... [more]
OXAA_SHEFN1.540e-1936.42Inner membrane protein oxaA OS=Shewanella frigidim... [more]
Y2594_SYNJA2.011e-1960.61UPF0161 protein CYA_2594 OS=Synechococcus sp. (str... [more]
Y2522_MOOTA2.011e-1965.63UPF0161 protein Moth_2522 OS=Moorella thermoacetic... [more]
Y3115_THEFY2.627e-1959.15UPF0161 protein Tfu_3115 OS=Thermobifida fusca (st... [more]
Y004_VIBSL2.627e-1957.35UPF0161 protein VS_0004 OS=Vibrio splendidus (stra... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-002-D10-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710989 ID=EY710989; Name=EY710989; organism=Citrus sinensis; type=EST; length=914bp
TTCAACTGGTTCTGGCCGTCAGCCAGTTGATAAGTCTTCTGTTCGGTCGA
ATAAACCGGACGACCGGTAGCACGAGCATCCGGACCGTCAGTACCGGTCA
GGCCACTTTGTGCCAGATATACACGTTCGCCGCCGTTATCGAACAGCTGG
AACGGAACATCCGGGTGGTCTTGGCGACGTGGATACAGCGGCAGTTTCAG
CTGGGCGATGTCACCACCCTGTGGATCGATTGCCAGGTCCAGTACATCCG
TTTTTACATGGATGAGGTCTTTATTGGTGACGACCGGGGTTTCTACCGGG
GTGCTGGTATCGGCATTCGCGCTGGGTACATCGGCACTGGCGGCAGCATT
GTTACCCAGTGGCGTATCCGGAATAGCCGGCGCCGACTGATTGGTAGCAA
CATTCTGAGTCGGCAGGGCAGCTTGGCCATAATCCTGGTTCCACTTAAGA
ACCATAGAGTAGGACACGATTGCCAGGGCGACGATCAGGATCGTGCGTTT
AATATCCATGATTACTCGGCCATCGAAGAAGAACGGGAGGTAGGGATAGG
TGGAACCGGGTCATAACCACCGGGATTCCACGGATGACAGCGACCTAAAC
GACGAAAGGTCAGCCAGCCACCGCGCAGAAGGCCATGATTTTCTATGGCT
TCCAACGCGTAGCAGGAACAACTGGGGTAGAAACGACAGTGATTTGCCAT
CAGGGGACTAATGGCATAGCGGTAAAACTGGATCGGAACGAGGGCCAGTT
TACGCATCAGTACTGTCTACCCCTACAGTTTCNGTGCTGACAGCTGGTGC
TGGCTTGTTTGTACAAGCAAACGTTTCCAGAGCTTGCCGAATCGCTGATC
AATCCGGGGTTTCTACGTCCCCCAGCCTTGCGCGCGACGAAACAATTCCC
ACCACCAGAGTGTC
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