EY710982

Overview
NameEY710982
Unique NameEY710982
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length910
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710982 vs. ExPASy Swiss-Prot
Match: CSLG1_ARATH (Cellulose synthase-like protein G1 OS=Arabidopsis thaliana GN=CSLG1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.605e-11
Identity = 48/174 (27.59%), Postives = 83/174 (47.70%), Query Frame = 3
Query:    3 YCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDDDGDFA--ELYVFKW---TSLLIPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQN 509
            Y  LP   L++   + P+ S+     +I+LF   +A  + +    G     WW +++  +I G S+  F   + +LK L      F VTSKA+DDD      E  +F +   +S+ +P TTV IVNL+  V G+   +  G    G L+ +L    + + +  P    ++ R++
Sbjct:  535 YGLLPQLALISGVSVFPKASDPWFWLYIILFFGAYAQDLSDFLLEGGTYRKWWNDQRMLMIKGLSSFFFGFIEFILKTLNLSTPKFNVTSKANDDDEQRKRYEQEIFDFGTSSSMFLPLTTVAIVNLLAFVWGLYGILFCG----GELYLELMLVSFAVVNCLPIYGAMVLRKD 704          
BLAST of EY710982 vs. ExPASy Swiss-Prot
Match: CSLB2_ARATH (Cellulose synthase-like protein B2 OS=Arabidopsis thaliana GN=CSLB2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.605e-11
Identity = 55/191 (28.80%), Postives = 86/191 (45.03%), Query Frame = 3
Query:    3 YCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGI--LEIRWS----GVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKAS----------------DDDGDFAELYVFKWTSLLIPPTTVLIVNLVGIVAGVSWAINSGYQ--SWGPLFGKLFFAIWVIAHLYPFLKGLLGR 503
            YC LPA+CLL N  + P+         + L I++   G+  L   W     G  I+ W+ ++ FW I  TS+ LF++F  +LK+L G+  N  + SK +                +DDG  +    F  +   +P T +++VNL  +V        S Y     G   G+    I V+   +PFLKGL  +
Sbjct:  549 YCLLPAYCLLHNSALFPK--------GLCLGITMLLAGMHCLYTLWEFMCLGHSIQSWYVSQSFWRIVATSSWLFSIFDIILKLL-GLSKNVFLVSKKTMPVETMSGSGIGPSQREDDGPNSGKTEFDGSLYFLPGTFIVLVNLAALVGVFVGLQRSSYSHGGGGSGLGEACACILVVMLFFPFLKGLFAK 730          
BLAST of EY710982 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSJ (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. japonica GN=CSLH2 PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 4.443e-11
Identity = 58/202 (28.71%), Postives = 92/202 (45.54%), Query Frame = 3
Query:    3 YCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSK-----ASDDDGDFAELYVFKWTSL--LIPPTTVLIVNLVGIVAG---VSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSI-LLASIFSLLWV 575
            Y  L  +C+LTN+  +P+ S       + LFIS      +E    G+    WW N +   I   SA   A    LLK L   +T F VT K       DD+ D A+   F + SL   IP T + ++N+V +  G   V++    G     P  G+     W++   +PF++G++  +    +  I WS+ L AS+   ++V
Sbjct:  559 YGLLGPYCILTNQSFLPKASEDGFSVPLALFISYNTYNFMEYMACGLSARAWWNNHRMQRIISVSAWTLAFLTVLLKSLGLSETVFEVTGKDKSMSDDDDNTDGADPGRFTFDSLPVFIPVTALAMLNIVAVTVGACRVAFGTAEGVPC-APGIGEFMCCGWLVLCFFPFVRGIVWGKG---SYGIPWSVKLKASLLVAMFV 756          
BLAST of EY710982 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSI (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. indica GN=CSLH2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.443e-11
Identity = 58/202 (28.71%), Postives = 92/202 (45.54%), Query Frame = 3
Query:    3 YCTLPAFCLLTNKFIIPEISNFASMWFILLFISIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSK-----ASDDDGDFAELYVFKWTSL--LIPPTTVLIVNLVGIVAG---VSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSI-LLASIFSLLWV 575
            Y  L  +C+LTN+  +P+ S       + LFIS      +E    G+    WW N +   I   SA   A    LLK L   +T F VT K       DD+ D A+   F + SL   IP T + ++N+V +  G   V++    G     P  G+     W++   +PF++G++  +    +  I WS+ L AS+   ++V
Sbjct:  559 YGLLGPYCILTNQSFLPKASEDGFSVPLALFISYNTYNFMEYMACGLSARAWWNNHRMQRIISVSAWTLAFLTVLLKSLGLSETVFEVTGKDKSMSDDDDNTDGADPGRFTFDSLPVFIPVTALAMLNIVAVTVGACRVAFGTAEGVPC-APGIGEFMCCGWLVLCFFPFVRGIVWGKG---SYGIPWSVKLKASLLVAMFV 756          
The following BLAST results are available for this feature:
BLAST of EY710982 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
CSLG1_ARATH2.605e-1127.59Cellulose synthase-like protein G1 OS=Arabidopsis ... [more]
CSLB2_ARATH2.605e-1128.80Cellulose synthase-like protein B2 OS=Arabidopsis ... [more]
CSLH2_ORYSJ4.443e-1128.71Cellulose synthase-like protein H2 OS=Oryza sativa... [more]
CSLH2_ORYSI4.443e-1128.71Cellulose synthase-like protein H2 OS=Oryza sativa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-002-D02-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710982 ID=EY710982; Name=EY710982; organism=Citrus sinensis; type=EST; length=910bp
CTTACTGCACGCTTCCTGCTTTTTGCCTTCTTACTAATAAATTCATCATT
CCAGAGATAAGCAACTTTGCTAGCATGTGGTTTATTCTACTTTTCATTTC
CATTTTTGCTACTGGAATACTGGAGATTAGATGGAGTGGGGTTGGTATTG
AGGACTGGTGGAGGAATGAACAGTTCTGGGTCATTGGTGGAACATCGGCA
CATCTATTTGCTGTTTTCCAAGGTCTCTTGAAAGTGCTTGCTGGGATTGA
TACCAACTTTACTGTCACTTCAAAGGCTTCTGATGATGATGGAGATTTTG
CAGAGCTTTATGTATTCAAATGGACATCTCTTCTCATCCCTCCAACTACA
GTCCTGATTGTGAACTTGGTGGGTATTGTAGCTGGTGTATCATGGGCCAT
AAACAGTGGTTACCAATCATGGGGTCCACTCTTTGGCAAGCTATTCTTTG
CCATATGGGTCATTGCCCATCTGTATCCTTTCCTGAAGGGTCTGTTGGGT
CGTCAAAACCGCACACCAACAATTGTCATTGTGTGGTCTATCCTACTTGC
TTCCATTTTCTCCTTGCTGTGGGTGCGTGTTGATCCCTTTACCTCTGATG
ACACCNNAAGCCATTTCAACNGTCAATGTGGCATTCATTGCTAGTGCATG
TNGNATGATTATTTGTGGCTTCAAATGCCATTCTTCCTTTCAGCTCTCAT
CAGTGTATATAAGAAGAAATTATGTCATTGGGAAATGATCGTAAGTTATT
TACTTNCTCGTCGGCTGGAGAAAGAGTTTGATGATATGGATCTTTTCTTT
GTCCCGGAGCTACCTAGGAGACTTGAGGCTTTANAAACCCCTTTTGATCC
TATTAAAATTATTCTTATATCGTTTGTAACTCACTACGNATGCTGATGTT
GNCCCTACCT
back to top