EY710955

Overview
NameEY710955
Unique NameEY710955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length923
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710955 vs. ExPASy Swiss-Prot
Match: COPB_DROME (Coatomer subunit beta OS=Drosophila melanogaster GN=betaCop PE=1 SV=2)

HSP 1 Score: 250.751 bits (639), Expect = 8.386e-66
Identity = 128/194 (65.98%), Postives = 148/194 (76.29%), Query Frame = 3
Query:   12 QNLCSELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNVLERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNMKCLTAPSALDGDCGFLAANLYAKSVFGEDALVNVSIEK---QTDGKLSGYIRIRSKTQGIALSLGDKITLKQK 584
            QN   ELAT+GDLKLVERP    LAP     IKAN+KVSSTE G+IFGNIVYET+  L   VVVLN IHIDIMDYI PA CTD  FR MW +FEWENKV VNT   D  E+L H++KSTNMKCLT   AL G CGF+AAN+YAKS+FGE+AL N+SIEK     D K++G+IRIR+K+QG+ALSLGDKI+  QK
Sbjct:  767 QNCTLELATLGDLKLVERPHPVVLAPHDFCNIKANVKVSSTENGIIFGNIVYETA--LNTNVVVLNTIHIDIMDYIIPASCTDTEFRQMWQDFEWENKVTVNTSFTDLHEYLKHLLKSTNMKCLTPEKALSGQCGFMAANMYAKSIFGENALANLSIEKPVDDPDSKVTGHIRIRAKSQGMALSLGDKISSSQK 958          
BLAST of EY710955 vs. ExPASy Swiss-Prot
Match: COPB_SCHPO (Coatomer subunit beta OS=Schizosaccharomyces pombe GN=sec26 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 6.234e-53
Identity = 106/187 (56.68%), Postives = 137/187 (73.26%), Query Frame = 3
Query:    3 TRPQNLCSELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNVLERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVAVNTVIQ-DEKEFLDHIIKSTNMKCLTAPSALDGDCGFLAANLYAKSVFGEDALVNVSIEKQTDGKLSGYIRIRSKTQGIALSLG 560
            T  QNL  +LAT+GDLK+VERP    L P + K ++A +KVSSTE+ VIFGNIVY      E  +VVLN I ++I+DYI PA   ++ FR+MW EFEWENKV +++       +FL  I+K TNM CLT  ++L GDCGFL+ANLYA S+FGEDAL+++S+EK   G +SG++RIRSKTQGIALSLG
Sbjct:  751 TTLQNLSVDLATLGDLKVVERPPPMNLGPHAFKSVQATVKVSSTESAVIFGNIVYGGKASDEDKIVVLNGIPVNIIDYIKPAFIPESQFRSMWTEFEWENKVDISSNEDISLYDFLHKIMKKTNMNCLTPDASLRGDCGFLSANLYACSIFGEDALMSLSVEKSVSGPISGHVRIRSKTQGIALSLG 937          
BLAST of EY710955 vs. ExPASy Swiss-Prot
Match: COPB_DICDI (Coatomer subunit beta OS=Dictyostelium discoideum GN=copb PE=2 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 1.300e-50
Identity = 104/192 (54.17%), Postives = 133/192 (69.27%), Query Frame = 3
Query:   12 QNLCSELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYE----TSNVLERTVVVLNDIHIDIMDYISPA--VCTDAAFRTMWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNMKCLTAPSALDGDCGFLAANLYAKSVFGEDALVNVSIEKQTDGKLSGYIRIRSKTQGIALSLGDKI 569
            QN+  EL T+GDLK+ ER   +T+AP      KA+IKVSST+ GVI G I ++     S++ ++  V+LN++HID++DYI PA    TD  FR  W EFEWENK+ VNT I D  +++ HI K TNM  LT    L  D G L+ANL AKSVFGEDAL N+ IEKQ DGK+SGYIRIR+K Q IA++LG+KI
Sbjct:  714 QNVTLELVTLGDLKICERVPPFTMAPREKTSAKASIKVSSTDNGVIMGTIAFDIAGSVSSMSDKNCVILNELHIDVIDYILPANHQYTDVLFRNHWLEFEWENKIPVNTNITDLVKYVHHISKVTNMGILTPEVHLSNDTGILSANLCAKSVFGEDALANICIEKQADGKISGYIRIRAKVQSIAVTLGEKI 905          
BLAST of EY710955 vs. ExPASy Swiss-Prot
Match: COPB_YEAST (Coatomer subunit beta OS=Saccharomyces cerevisiae GN=SEC26 PE=1 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 6.038e-48
Identity = 95/193 (49.22%), Postives = 130/193 (67.36%), Query Frame = 3
Query:   12 QNLCSELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNVLERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNMKCLTAPSAL-DGDCGFLAANLYAKSVFGEDALVNVSIEKQT-DGKLSGYIRIRSKTQGIALSLGDKITLKQK 584
            +NL  + AT+GDLK+++ PQ   + P    +    +KVSS +TGVIFGNI+Y+ ++  +   V+LND+H+DIMDYI PA   D  FRTMW  FEWENK++V + +     +L  ++K TNM  LT   +L + DC FL+ NLYAKS FGEDAL N+ IEK +    + GY+RIRSK QG+ALSLGD++ L  K
Sbjct:  771 KNLHVQFATLGDLKIIDTPQKTNVIPHGFHKFTVTVKVSSADTGVIFGNIIYDGAHGEDARYVILNDVHVDIMDYIKPATADDEHFRTMWNAFEWENKISVKSQLPTLHAYLRELVKGTNMGILTPSESLGEDDCRFLSCNLYAKSSFGEDALANLCIEKDSKTNDVIGYVRIRSKGQGLALSLGDRVALIAK 963          
The following BLAST results are available for this feature:
BLAST of EY710955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
COPB_DROME8.386e-6665.98Coatomer subunit beta OS=Drosophila melanogaster G... [more]
COPB_SCHPO6.234e-5356.68Coatomer subunit beta OS=Schizosaccharomyces pombe... [more]
COPB_DICDI1.300e-5054.17Coatomer subunit beta OS=Dictyostelium discoideum ... [more]
COPB_YEAST6.038e-4849.22Coatomer subunit beta OS=Saccharomyces cerevisiae ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-002-A10-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710955 ID=EY710955; Name=EY710955; organism=Citrus sinensis; type=EST; length=923bp
CCACGCGTCCGCAGAATTTGTGCTCGGAGTTAGCTACTATGGGTGATCTT
AAGCTTGTTGAGCGTCCACAGAATTATACATTAGCACCTGAATCAAGCAA
GCAAATAAAGGCTAACATCAAGGTGTCCTCCACTGAGACTGGGGTCATTT
TTGGGAATATTGTTTATGAGACTTCAAATGTGCTTGAGCGAACAGTTGTT
GTCCTCAATGACATTCACATTGACATCATGGACTATATTTCTCCTGCTGT
TTGTACAGATGCAGCTTTTAGAACTATGTGGGCTGAGTTTGAATGGGAAA
ACAAGGTTGCTGTTAACACAGTAATTCAAGATGAGAAGGAATTCCTTGAT
CATATCATCAAATCAACCAACATGAAGTGCCTCACTGCACCGTCTGCACT
AGATGGTGATTGTGGGTTCCTGGCAGCAAACTTGTACGCCAAGAGTGTGT
TTGGTGAGGATGCTTTGGTAAATGTAAGCATTGAGAAGCAAACCGATGGC
AAGCTCAGTGGCTACATCAGAATAAGGAGCAAGACCCAAGGGATTGCCCT
TAGTCTTGGGGATAAGATCACTCTCAAGCAGAAGGGAGGCAGTTGATTTG
GAAAATGAGCATATCATTATTTTTGGAAACACAGGTGCTTTGCCTACAAA
TTAGAAGATTGTTCATCCCATTTTTGCTGTTCACTTTGTATCTAGGGCAT
TGAGGAAGTGACATTTATATTTGAGACGTATTTTACAGTGAAAAGTACCT
GAAAATGATGAAGTGTTCTTTTTTTTTTCGGTTCTTAACGATAGCATTTG
AGATGGGATTTTGCTGCAATTTTTCAGTAGTATTGAATTGAGCTCTATGC
TTTCATATTGGNAGTTTGGCTGTGTAGAAACCTTNGNTATAAATGNTCGC
GCATTGTGATCTCAAAGCGTTTG
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