EY710949 | Citrus Genome Database

Overview


Name	EY710949
Unique Name	EY710949
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	941

Libraries


Library Name	Type
Sweet orange fruit, development stadium (3 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY710949 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSJ (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.866e-26
Identity = 49/84 (58.33%), Postives = 64/84 (76.19%), Query Frame = 2

Query:  422 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWGPFCKKYNVXIRAPFRYF 673
            +L P+D+FV+T D   EPP+IT NTVLS+LAVDYPV K++CYVSDD  + L F +L E ++FA+ W PFCKK+N+  RAP  YF
Sbjct:  347 QLAPIDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYF 430

HSP 2 Score: 33.4982 bits (75), Expect = 1.866e-26
Identity = 14/38 (36.84%), Postives = 20/38 (52.63%), Query Frame = 3

Query:  189 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 302
            W ++ +CE  F   W+L    KW P+  +TY  RL  R
Sbjct:  301 WLVSVICEIWFALSWLLDQFPKWYPINRETYLDRLALR 338

[Close]

BLAST of EY710949 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSI (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.866e-26
Identity = 49/84 (58.33%), Postives = 64/84 (76.19%), Query Frame = 2

Query:  422 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWGPFCKKYNVXIRAPFRYF 673
            +L P+D+FV+T D   EPP+IT NTVLS+LAVDYPV K++CYVSDD  + L F +L E ++FA+ W PFCKK+N+  RAP  YF
Sbjct:  347 QLAPIDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYF 430

HSP 2 Score: 33.4982 bits (75), Expect = 1.866e-26
Identity = 14/38 (36.84%), Postives = 20/38 (52.63%), Query Frame = 3

Query:  189 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 302
            W ++ +CE  F   W+L    KW P+  +TY  RL  R
Sbjct:  301 WLVSVICEIWFALSWLLDQFPKWYPINRETYLDRLALR 338

[Close]

BLAST of EY710949 vs. ExPASy Swiss-Prot
Match: CESA8_ORYSJ (Probable cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA8 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.161e-26
Identity = 49/84 (58.33%), Postives = 62/84 (73.81%), Query Frame = 2

Query:  422 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWGPFCKKYNVXIRAPFRYF 673
            +L  VD+FV+T D   EPP++T NTVLS+LAVDYPV K++CYVSDD  + L F +L E S+FA+ W PF KKYN+  RAP  YF
Sbjct:  351 QLAAVDIFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFDALAETSEFARKWVPFVKKYNIEPRAPEWYF 434

HSP 2 Score: 35.4242 bits (80), Expect = 3.161e-26
Identity = 16/38 (42.11%), Postives = 20/38 (52.63%), Query Frame = 3

Query:  189 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 302
            W L+ +CE  F   WIL    KW P+  +TY  RL  R
Sbjct:  305 WLLSVICEIWFALSWILDQFPKWFPINRETYLDRLALR 342

[Close]

BLAST of EY710949 vs. ExPASy Swiss-Prot
Match: CESA9_ARATH (Probable cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Arabidopsis thaliana GN=CESA9 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 4.114e-26
Identity = 50/84 (59.52%), Postives = 63/84 (75.00%), Query Frame = 2

Query:  422 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWGPFCKKYNVXIRAPFRYF 673
            EL PVD+FV+T D   EPP+IT NTVLS+LAVDYPV K+ACYVSDD  + L F +L   ++FA+ W PFCKK+++  RAP  YF
Sbjct:  357 ELAPVDVFVSTVDPLKEPPLITANTVLSILAVDYPVEKVACYVSDDGAAMLTFEALSYTAEFARKWVPFCKKFSIEPRAPEWYF 440

HSP 2 Score: 33.113 bits (74), Expect = 4.114e-26
Identity = 15/38 (39.47%), Postives = 19/38 (50.00%), Query Frame = 3

Query:  189 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 302
            W  + +CE  F   WIL    KW P+  +TY  RL  R
Sbjct:  311 WLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLR 348

[Close]

BLAST of EY710949 vs. ExPASy Swiss-Prot
Match: CESA5_ARATH (Cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Arabidopsis thaliana GN=CESA5 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 4.115e-26
Identity = 50/84 (59.52%), Postives = 62/84 (73.81%), Query Frame = 2

Query:  422 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWGPFCKKYNVXIRAPFRYF 673
            EL  VD+FV+T D   EPP+IT NTVLS+LAVDYPV ++ACYVSDD  + L F +L E ++FA+ W PFCKKY +  RAP  YF
Sbjct:  339 ELAGVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDRVACYVSDDGAAMLTFEALSETAEFARKWVPFCKKYTIEPRAPEWYF 422

HSP 2 Score: 33.8834 bits (76), Expect = 4.115e-26
Identity = 14/38 (36.84%), Postives = 20/38 (52.63%), Query Frame = 3

Query:  189 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 302
            W ++ +CE  F   W+L    KW P+  +TY  RL  R
Sbjct:  293 WLISVICEIWFAVSWVLDQFPKWYPIERETYLDRLSLR 330

[Close]

BLAST of EY710949 vs. ExPASy Swiss-Prot
Match: CSLD4_ARATH (Cellulose synthase-like protein D4 OS=Arabidopsis thaliana GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 4.406e-25
Identity = 47/84 (55.95%), Postives = 66/84 (78.57%), Query Frame = 2

Query:  422 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWGPFCKKYNVXIRAPFRYF 673
            +LP +D+FV+TAD E EPP++T NT+LS+LAVDYPV K++CY+SDD  + L+F ++ EA+ FA LW PFC+K+N+  R P  YF
Sbjct:  352 DLPGIDLFVSTADPEKEPPLVTANTILSILAVDYPVEKVSCYLSDDGGALLSFEAMAEAASFADLWVPFCRKHNIEPRNPDSYF 435

HSP 2 Score: 26.9498 bits (58), Expect = 4.406e-25
Identity = 12/38 (31.58%), Postives = 20/38 (52.63%), Query Frame = 3

Query:  189 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 302
            W ++ +CE  F F WIL    K  P+   T  + L+++
Sbjct:  301 WLMSIICELWFGFSWILDQIPKLCPINRSTDLEVLRDK 338

[Close]

BLAST of EY710949 vs. ExPASy Swiss-Prot
Match: CSLE1_ARATH (Cellulose synthase-like protein E1 OS=Arabidopsis thaliana GN=CSLE1 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.774e-25
Identity = 48/83 (57.83%), Postives = 62/83 (74.70%), Query Frame = 2

Query:  422 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWGPFCKKYNVXIRAPFRY 670
            +LP +D+FV TAD  +EPP++ VNTVLS+ A+DYP  KLA Y+SDD  S L FY+L EA++FAK W PFCKK+NV   +P  Y
Sbjct:  107 DLPRLDVFVCTADPVIEPPLLVVNTVLSVTALDYPPEKLAVYLSDDGGSELTFYALTEAAEFAKTWVPFCKKFNVEPTSPAAY 189

HSP 2 Score: 31.187 bits (69), Expect = 9.774e-25
Identity = 11/38 (28.95%), Postives = 19/38 (50.00%), Query Frame = 3

Query:  189 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 302
            WF+ F+ E  F   W++  + +W P+    +  RL  R
Sbjct:   66 WFVMFIVEIWFGLYWVVTQSSRWNPVWRFPFSDRLSRR 103

[Close]

BLAST of EY710949 vs. ExPASy Swiss-Prot
Match: CSLD3_ARATH (Cellulose synthase-like protein D3 OS=Arabidopsis thaliana GN=CSLD3 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 4.713e-24
Identity = 49/84 (58.33%), Postives = 64/84 (76.19%), Query Frame = 2

Query:  422 ELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWGPFCKKYNVXIRAPFRYF 673
            +LP +DMFV+TAD E EPP++T NT+LS+LA DYPV KLACYVSDD  + L F ++ EA+ FA +W PFC+K+N+  R P  YF
Sbjct:  374 DLPGLDMFVSTADPEKEPPLVTSNTILSILAADYPVEKLACYVSDDGGALLTFEAMAEAASFANMWVPFCRKHNIEPRNPDSYF 457

HSP 2 Score: 22.7126 bits (47), Expect = 4.713e-24
Identity = 11/38 (28.95%), Postives = 18/38 (47.37%), Query Frame = 3

Query:  189 WFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 302
            W ++ +CE  F   W+L    K  P+   T    L+E+
Sbjct:  323 WGMSVVCELWFALSWLLDQLPKLCPINRATDLNVLKEK 360

[Close]

BLAST of EY710949 vs. ExPASy Swiss-Prot
Match: CSLE1_ORYSJ (Cellulose synthase-like protein E1 OS=Oryza sativa subsp. japonica GN=CSLE1 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 2.304e-23
Identity = 46/85 (54.12%), Postives = 62/85 (72.94%), Query Frame = 2

Query:  419 QELPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWGPFCKKYNVXIRAPFRYF 673
            Q LP VD+FV TAD + EPP + ++T+LS++A +YP  K++ Y+SDD  S L FY+L EAS FAK W PFCK+YN+  R+P  YF
Sbjct:  100 QNLPGVDIFVCTADPQSEPPSLVISTILSVMAYNYPSEKISVYLSDDGGSILTFYALWEASIFAKKWLPFCKRYNIEPRSPAAYF 184

HSP 2 Score: 30.4166 bits (67), Expect = 2.304e-23
Identity = 12/39 (30.77%), Postives = 18/39 (46.15%), Query Frame = 3

Query:  186 AWFLAFLCESCFTFIWILIVNCKWTPLTYKTYPQRLQER 302
            AW      E  F   W++  + +W P   +T+  RL ER
Sbjct:   59 AWLGMAAAELWFAVYWVIAQSVRWRPFRRRTFRDRLAER 97

[Close]

BLAST of EY710949 vs. ExPASy Swiss-Prot
Match: CESA4_ORYSJ (Cellulose synthase A catalytic subunit 4 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA4 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.113e-23
Identity = 51/83 (61.45%), Postives = 62/83 (74.70%), Query Frame = 2

Query:  425 LPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWGPFCKKYNVXIRAPFRYF 673
            L PVD FV+T D   EPP+IT NTVLS+LAVDYPV K++CYVSDD  + L F SL E ++FA+ W PFCKKY++  RAP  YF
Sbjct:  264 LAPVDFFVSTVDPLKEPPLITANTVLSILAVDYPVEKISCYVSDDGSAMLTFESLAETAEFARRWVPFCKKYSIEPRAPEFYF 346

The following BLAST results are available for this feature:

BLAST of EY710949 vs. ExPASy Swiss-Prot

BLAST of EY710949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65


Match Name	E-value	Identity	Description
CESA1_ORYSJ	1.866e-26	58.33	Probable cellulose synthase A catalytic subunit 1 ...	[more]
CESA1_ORYSI	1.866e-26	58.33	Probable cellulose synthase A catalytic subunit 1 ...	[more]
CESA8_ORYSJ	3.161e-26	58.33	Probable cellulose synthase A catalytic subunit 8 ...	[more]
CESA9_ARATH	4.114e-26	59.52	Probable cellulose synthase A catalytic subunit 9 ...	[more]
CESA5_ARATH	4.115e-26	59.52	Cellulose synthase A catalytic subunit 5 [UDP-form...	[more]
CSLD4_ARATH	4.406e-25	55.95	Cellulose synthase-like protein D4 OS=Arabidopsis ...	[more]
CSLE1_ARATH	9.774e-25	57.83	Cellulose synthase-like protein E1 OS=Arabidopsis ...	[more]
CSLD3_ARATH	4.713e-24	58.33	Cellulose synthase-like protein D3 OS=Arabidopsis ...	[more]
CSLE1_ORYSJ	2.304e-23	54.12	Cellulose synthase-like protein E1 OS=Oryza sativa...	[more]
CESA4_ORYSJ	3.113e-23	61.45	Cellulose synthase A catalytic subunit 4 [UDP-form...	[more]

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Properties


Property Name	Value
Genbank description	CS00-C3-702-002-A03-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY710949 ID=EY710949; Name=EY710949; organism=Citrus sinensis; type=EST; length=941bp
CCACGCGTCCGCGGACGCGTGGGTTGTTTTTCAAGCTCATGGCCAATACA
AAGTCGTCATGTCTCCCTCTATACGAAAAAGTTTTTCATAAAAACACATA
TCATAGGGCTTTAGATGTTATCATCTTGTTCCTTCTTCTATGTCTGCTCT
TCTATCGGCTCTCAACGTTGAAGAATCATGGATTTGCTTGGTTTCTTGCT
TTTCTATGTGAGTCTTGTTTTACTTTCATCTGGATTCTCATCGTCAACTG
CAAGTGGACTCCTTTGACCTACAAAACATATCCCCAACGTCTCCAAGAAA
GGTAACAAATCAAATAACGTTAGCATTAATAATTTCCGCATCATTTGCAA
TTGTCTTTGTCATTTTGCAAGTTACTACACACACACACACACACACATGT
GTACGACTCAACAGGATACAGGAGCTGCCCCCAGTGGACATGTTTGTGAC
AACTGCTGATGCTGAACTCGAGCCGCCAATCATCACTGTAAACACAGTGC
TGTCTTTGTTGGCAGTTGATTATCCAGTTCACAAGCTCGCTTGCTATGTT
TCTGATGATGCCTGCTCACCTCTCAATTTCTACTCTCTTGTTGAAGCTTC
TAAATTCGCTAAGCTTTGGGGTCCATTCTGTAAAAAGTATAATGTTCNAA
TTAGAGCTCCCTTTAGATACTTCCCAGATAGTGAGCCGTCCGATTCCAGN
TCAGGGGGACTCCCTGCAGACTGGAAAAAACATGAAGANGAATGACTGNT
TTCTCCATACAGAACGCATGAATCATCCCAACATAGTGAAGGTATATNCN
GAGAACAAGGAAGTCTCTCGATGAGATAACACATTTAGTTACTATTCAGA
GAGAAAAGCCAAGCATCCCCTCACTACAAGCAGGGCCATGAATGNATGAC
TGCGACTGNATGCCCACATCCAGAGATGGTCTTCAGCTTTG