EY710949

Overview
NameEY710949
Unique NameEY710949
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length941
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710949 vs. ExPASy Swiss-Prot
Match: CSLF3_ORYSI (Probable mixed-linked glucan synthase 3 OS=Oryza sativa subsp. indica GN=CSLF3 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.768e-18
Identity = 44/83 (53.01%), Postives = 61/83 (73.49%), Query Frame = 2
Query:  425 LPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWGPFCKKYNVXIRAPFRYF 673
            LP +D+FVTTAD   EP + T+N VLS+LA DYPV + ACY+SDD+ + + + +LVE +KFA LW PFC+K+ +  R+P  YF
Sbjct:  167 LPGIDVFVTTADPIDEPVLYTMNCVLSILAADYPVDRSACYLSDDSGALILYEALVETAKFATLWVPFCRKHCIEPRSPESYF 249          
BLAST of EY710949 vs. ExPASy Swiss-Prot
Match: CESAB_ORYSJ (Putative cellulose synthase A catalytic subunit 11 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA11 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.015e-18
Identity = 46/83 (55.42%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  425 LPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWGPFCKKYNVXIRAPFRYF 673
            L  VD+FV  ADA  EPP+ T NTVLS+LA DYP   +ACYV DD    L F SL EA+ FA+ W PFC+++ V  RAP  YF
Sbjct:  124 LAGVDVFVAAADAAREPPLATANTVLSVLAADYPAGGVACYVHDDGADMLVFESLFEAAGFARRWIPFCRRHGVEPRAPELYF 206          
BLAST of EY710949 vs. ExPASy Swiss-Prot
Match: CSLF6_ORYSJ (Probable mixed-linked glucan synthase 6 OS=Oryza sativa subsp. japonica GN=CSLF6 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 8.772e-18
Identity = 42/83 (50.60%), Postives = 58/83 (69.88%), Query Frame = 2
Query:  425 LPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWGPFCKKYNVXIRAPFRYF 673
            LP +D+FVTTAD   EP + T N++LS+LA DYPV +  CY+SDD+   L + ++ EA+KFA LW PFC+K+ +  R P  YF
Sbjct:  183 LPGLDIFVTTADPIKEPILSTANSILSILAADYPVDRNTCYLSDDSGMLLTYEAMAEAAKFATLWVPFCRKHAIEPRGPESYF 265          
BLAST of EY710949 vs. ExPASy Swiss-Prot
Match: CSLF9_ORYSJ (Probable mixed-linked glucan synthase 9 OS=Oryza sativa subsp. japonica GN=CSLF9 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.426e-17
Identity = 39/83 (46.99%), Postives = 56/83 (67.47%), Query Frame = 2
Query:  425 LPPVDMFVTTADAELEPPIITVNTVLSLLAVDYPVHKLACYVSDDACSPLNFYSLVEASKFAKLWGPFCKKYNVXIRAPFRYF 673
            LP +D+F+ T D   EP + T+N++LS+LA DYP  + A Y+SDD  S  ++  L+E ++FA LW PFC+K+ V  RAP  YF
Sbjct:  151 LPGIDVFINTVDPVDEPMLYTMNSILSILATDYPADRHAAYLSDDGASLAHYEGLIETARFAALWVPFCRKHRVEPRAPESYF 233          
BLAST of EY710949 vs. ExPASy Swiss-Prot
Match: CSLH3_ORYSJ (Putative cellulose synthase-like protein H3 OS=Oryza sativa subsp. japonica GN=CSLH3 PE=3 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 1.449e-12
Identity = 29/47 (61.70%), Postives = 39/47 (82.98%), Query Frame = 2
Query:  533 KLACYVSDDACSPLNFYSLVEASKFAKLWGPFCKKYNVXIRAPFRYF 673
            +LACYVSDD CSP+ +Y+L EA+ FA+ W PFC+++ V +RAPFRYF
Sbjct:  173 RLACYVSDDGCSPVTYYALREAAGFARTWVPFCRRHGVAVRAPFRYF 219          
The following BLAST results are available for this feature:
BLAST of EY710949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CSLF3_ORYSI1.768e-1853.01Probable mixed-linked glucan synthase 3 OS=Oryza s... [more]
CESAB_ORYSJ3.015e-1855.42Putative cellulose synthase A catalytic subunit 11... [more]
CSLF6_ORYSJ8.772e-1850.60Probable mixed-linked glucan synthase 6 OS=Oryza s... [more]
CSLF9_ORYSJ7.426e-1746.99Probable mixed-linked glucan synthase 9 OS=Oryza s... [more]
CSLH3_ORYSJ1.449e-1261.70Putative cellulose synthase-like protein H3 OS=Ory... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-002-A03-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710949 ID=EY710949; Name=EY710949; organism=Citrus sinensis; type=EST; length=941bp
CCACGCGTCCGCGGACGCGTGGGTTGTTTTTCAAGCTCATGGCCAATACA
AAGTCGTCATGTCTCCCTCTATACGAAAAAGTTTTTCATAAAAACACATA
TCATAGGGCTTTAGATGTTATCATCTTGTTCCTTCTTCTATGTCTGCTCT
TCTATCGGCTCTCAACGTTGAAGAATCATGGATTTGCTTGGTTTCTTGCT
TTTCTATGTGAGTCTTGTTTTACTTTCATCTGGATTCTCATCGTCAACTG
CAAGTGGACTCCTTTGACCTACAAAACATATCCCCAACGTCTCCAAGAAA
GGTAACAAATCAAATAACGTTAGCATTAATAATTTCCGCATCATTTGCAA
TTGTCTTTGTCATTTTGCAAGTTACTACACACACACACACACACACATGT
GTACGACTCAACAGGATACAGGAGCTGCCCCCAGTGGACATGTTTGTGAC
AACTGCTGATGCTGAACTCGAGCCGCCAATCATCACTGTAAACACAGTGC
TGTCTTTGTTGGCAGTTGATTATCCAGTTCACAAGCTCGCTTGCTATGTT
TCTGATGATGCCTGCTCACCTCTCAATTTCTACTCTCTTGTTGAAGCTTC
TAAATTCGCTAAGCTTTGGGGTCCATTCTGTAAAAAGTATAATGTTCNAA
TTAGAGCTCCCTTTAGATACTTCCCAGATAGTGAGCCGTCCGATTCCAGN
TCAGGGGGACTCCCTGCAGACTGGAAAAAACATGAAGANGAATGACTGNT
TTCTCCATACAGAACGCATGAATCATCCCAACATAGTGAAGGTATATNCN
GAGAACAAGGAAGTCTCTCGATGAGATAACACATTTAGTTACTATTCAGA
GAGAAAAGCCAAGCATCCCCTCACTACAAGCAGGGCCATGAATGNATGAC
TGCGACTGNATGCCCACATCCAGAGATGGTCTTCAGCTTTG
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