EY710939

Overview
NameEY710939
Unique NameEY710939
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710939 vs. ExPASy Swiss-Prot
Match: ARFN_ARATH (Putative auxin response factor 14 OS=Arabidopsis thaliana GN=ARF14 PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 2.117e-16
Identity = 44/108 (40.74%), Postives = 67/108 (62.04%), Query Frame = 3
Query:  105 SPQESQSRQI---RSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYFXXXXXXXXXXXXLWHDFCSGVRKIFIYTAEEVKKLSPKVKL 419
            SP E QS+Q    R+CTKV MQG+ +GRAVDL+  + Y+ L+ +LE++FD++G L  +  +W++ +              W +FC+ V+KIFIY+ EEVK L  +  L
Sbjct:  497 SPTEIQSKQFSSTRTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDLKGQL-QARNQWEIAFTNNEEDKMLVGEDPWPEFCNMVKKIFIYSKEEVKNLKSRKSL 603          
BLAST of EY710939 vs. ExPASy Swiss-Prot
Match: ARFK_ARATH (Auxin response factor 11 OS=Arabidopsis thaliana GN=ARF11 PE=2 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 2.764e-16
Identity = 46/103 (44.66%), Postives = 63/103 (61.17%), Query Frame = 3
Query:  105 SPQES-QSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYFXXXXXXXXXXXXLWHDFCSGVRKIFIYTAEEVKKLSPK 410
            SP+E  Q    RS  KV MQG AVGRAVDLT    Y++L+K+LE+MF+IEG+L     KW +V+              W++FC   +K+FIY ++EVKK+  K
Sbjct:  500 SPKEQKQQTSTRSRIKVQMQGTAVGRAVDLTLLRSYDELIKELEKMFEIEGEL-SPKDKWAIVFTDDEGDRMLVGDDPWNEFCKMAKKLFIYPSDEVKKMRSK 601          
BLAST of EY710939 vs. ExPASy Swiss-Prot
Match: ARFI_ARATH (Auxin response factor 9 OS=Arabidopsis thaliana GN=ARF9 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.764e-16
Identity = 45/104 (43.27%), Postives = 67/104 (64.42%), Query Frame = 3
Query:  105 SPQESQSRQ---IRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYFXXXXXXXXXXXXLWHDFCSGVRKIFIYTAEEVKKLSP 407
            SP+E QS+Q    RS TKV MQG+ VGRAVDL     Y +L+  +E++FDI+G+L  S  +W++V+              W +FC+ V++IFI++ EEVKK++P
Sbjct:  510 SPKEVQSKQSSSTRSRTKVQMQGVPVGRAVDLNALKGYNELIDDIEKLFDIKGEL-RSRNQWEIVFTDDEGDMMLVGDDPWPEFCNMVKRIFIWSKEEVKKMTP 612          
BLAST of EY710939 vs. ExPASy Swiss-Prot
Match: ARFU_ARATH (Putative auxin response factor 21 OS=Arabidopsis thaliana GN=ARF21 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 3.056e-15
Identity = 44/108 (40.74%), Postives = 64/108 (59.26%), Query Frame = 3
Query:  105 SPQESQSRQI---RSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYFXXXXXXXXXXXXLWHDFCSGVRKIFIYTAEEVKKLSPKVKL 419
            SP E QS+Q    R+CTKV MQG+ +GRAVDL+  + Y+ L+ +LE++FDI+G L  +  +W++ +              W +FC  V+KI IY+ EEVK L     L
Sbjct:  498 SPIEIQSKQFSSSRTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDIKGQL-QTRNQWKIAFTDSDGYEMLVGDDPWPEFCKMVKKILIYSKEEVKNLKSSKSL 604          
BLAST of EY710939 vs. ExPASy Swiss-Prot
Match: ARFT_ARATH (Auxin response factor 20 OS=Arabidopsis thaliana GN=ARF20 PE=2 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 5.213e-15
Identity = 43/108 (39.81%), Postives = 64/108 (59.26%), Query Frame = 3
Query:  105 SPQESQSRQI---RSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYFXXXXXXXXXXXXLWHDFCSGVRKIFIYTAEEVKKLSPKVKL 419
            SP E QS+Q    R+CTKV MQG+ +GRAVDL+  + Y+ L+ +LE++FD++G L  +  +W++ +              W +FC  V+KI IY+ EEVK L     L
Sbjct:  482 SPIEIQSKQFGSTRTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDLKGQL-QTRNQWKIAFTDSDGYEMLVGDDPWPEFCKMVKKILIYSKEEVKNLKSSKSL 588          
BLAST of EY710939 vs. ExPASy Swiss-Prot
Match: ARFM_ARATH (Auxin response factor 13 OS=Arabidopsis thaliana GN=ARF13 PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 8.892e-15
Identity = 43/107 (40.19%), Postives = 65/107 (60.75%), Query Frame = 3
Query:  105 SPQESQSRQI---RSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYFXXXXXXXXXXXXLWHDFCSGVRKIFIYTAEEVKKLSPKVK 416
            SP+E QS +    RS  KVHMQG+A+ RAVDLT    Y  L++KLEE+FD++ +L  +  +W++V+              W +FC+  ++IFI + EE+KK+  K K
Sbjct:  495 SPKEVQSTEFNFTRSRIKVHMQGVAISRAVDLTAMHGYNQLIQKLEELFDLKDEL-RTRNQWEIVFTNNEGAEMLVGDDPWPEFCNMAKRIFICSKEEIKKMKLKNK 600          
BLAST of EY710939 vs. ExPASy Swiss-Prot
Match: ARFA_ORYSJ (Auxin response factor 1 OS=Oryza sativa subsp. japonica GN=ARF1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.379e-14
Identity = 49/108 (45.37%), Postives = 61/108 (56.48%), Query Frame = 3
Query:  105 SPQESQSRQ---IRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYFXXXXXXXXXXXXLWHDFCSGVRKIFIYTAEEVKKLSPKVKL 419
            SPQE QS Q    R+  KV M G AVGRAVDL   D YE L+ +LEEMF+I+ DL    +KW+V +              W +FC  VRKI +Y  E+ KK+ P  KL
Sbjct:  582 SPQEIQSHQNYTARTRIKVQMHGNAVGRAVDLANLDGYEQLMNELEEMFNIK-DL---KQKWKVAFTDDEGDTMEVGDDPWLEFCQMVRKIVLYPIEDEKKIEPHPKL 685          
BLAST of EY710939 vs. ExPASy Swiss-Prot
Match: ARFL_ARATH (Auxin response factor 12 OS=Arabidopsis thaliana GN=ARF12 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.854e-12
Identity = 37/93 (39.78%), Postives = 58/93 (62.37%), Query Frame = 3
Query:  105 SPQESQSRQI---RSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYFXXXXXXXXXXXXLWHDFCSGVRKIFI 374
            SP E Q++Q    R+CTKV MQG+ +GRAVDL+  + Y+ L+ +LE++FDI+G L  +  +W++ +              W +FC+ V+KIFI
Sbjct:  498 SPTEIQNKQFSSSRTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDIKGQL-QTRNQWEIAFTDSDEDKMLVGDDPWPEFCNMVKKIFI 589          
BLAST of EY710939 vs. ExPASy Swiss-Prot
Match: ARFV_ARATH (Auxin response factor 22 OS=Arabidopsis thaliana GN=ARF22 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 9.202e-12
Identity = 36/94 (38.30%), Postives = 57/94 (60.64%), Query Frame = 3
Query:  105 SPQESQSRQI---RSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYFXXXXXXXXXXXXLWHDFCSGVRKIFIY 377
            SP E QS+Q    R+CTKV MQG+ + RAVDL+  + Y+ L+ +LEE+FD++G L  +  +W++ +              W +FC+ V+KI I+
Sbjct:  496 SPTEIQSKQFSSTRTCTKVQMQGVTIERAVDLSVLNGYDQLILELEELFDLKGQL-QTRNQWEIAFTDSDDDKMLVGDDPWPEFCNMVKKILIF 588          
BLAST of EY710939 vs. ExPASy Swiss-Prot
Match: ARFO_ARATH (Putative auxin response factor 15 OS=Arabidopsis thaliana GN=ARF15 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.202e-11
Identity = 34/93 (36.56%), Postives = 59/93 (63.44%), Query Frame = 3
Query:  105 SPQESQSRQI---RSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYFXXXXXXXXXXXXLWHDFCSGVRKIFI 374
            SP + QS+Q    R+CTKV MQG+ +GRAVDL+  + Y+ L+ +LE++FD++G L  +  +W++++              W +FC+ V++I+I
Sbjct:  498 SPTKIQSKQFSSTRTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDLKGQL-QTRNQWKIIFTGSDEDEMLVGDDPWPEFCNMVKRIYI 589          
The following BLAST results are available for this feature:
BLAST of EY710939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
ARFN_ARATH2.117e-1640.74Putative auxin response factor 14 OS=Arabidopsis t... [more]
ARFK_ARATH2.764e-1644.66Auxin response factor 11 OS=Arabidopsis thaliana G... [more]
ARFI_ARATH2.764e-1643.27Auxin response factor 9 OS=Arabidopsis thaliana GN... [more]
ARFU_ARATH3.056e-1540.74Putative auxin response factor 21 OS=Arabidopsis t... [more]
ARFT_ARATH5.213e-1539.81Auxin response factor 20 OS=Arabidopsis thaliana G... [more]
ARFM_ARATH8.892e-1540.19Auxin response factor 13 OS=Arabidopsis thaliana G... [more]
ARFA_ORYSJ3.379e-1445.37Auxin response factor 1 OS=Oryza sativa subsp. jap... [more]
ARFL_ARATH1.854e-1239.78Auxin response factor 12 OS=Arabidopsis thaliana G... [more]
ARFV_ARATH9.202e-1238.30Auxin response factor 22 OS=Arabidopsis thaliana G... [more]
ARFO_ARATH1.202e-1136.56Putative auxin response factor 15 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-001-H05-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710939 ID=EY710939; Name=EY710939; organism=Citrus sinensis; type=EST; length=929bp
CCTTGCACAACCACGCGNCCGGACTCTGACTTACTTATAACGATTTATAT
TAATCGATCTGACGTTCCTTCTGTAAGTTGTGGATTANATCATCAGAGAG
GGTTTCTCCTCAGGAGTCTCAAAGCAGGCAGATTCGAAGTTGCACAAAGG
TTCATATGCAAGGAATTGCAGTTGGGAGGGCTGTTGATTTGACACGATTT
GACTGTTATGAAGACCTTCTCAAGAAACTGGAGGAGATGTTTGACATTGA
GGGAGACCTGTGTGGATCAACCAAGAAGTGGCAAGTGGTCTACTTTGATG
ATGAAGATGACATGATGATGGTTGGAGATGATCTATGGCATGACTTCTGT
AGCGGGGTGAGGAAAATTTTCATCTACACAGCAGAAGAAGTAAAGAAGCT
GTCGCCCAAGGTAAAACTTCCAGGTAACGAGGAGCTCAATGCAGGCAAGC
CAGATGGTGAAGTGGTTGTCAACACTGATGATCGGGCATCTATTGTTGGA
CCTGGGGGTGCTGATATGCCTATGCAGTAAGATATCAGCAGAGTATGGAG
GGAATGGTAAGGTGACTGCCCTTTAGATTCGGCCTAGTAGAAAAACATGA
GGGGTAGAGAGGAGGAGGCCTTATAGTCGACATGGCGTCCAAAGAGGGAC
TTTGCCTAAAGCCTAAAAGTGTGGGTGGTAAGAAGTTTTCATTTTGGCTT
TGCCAAGGGAATACAAAAAAGGTTTGGTTATTCAAAATCCCGGGGAACGG
GAAAGTTGTTACGTCATATCGGCGGCCCAGCTTATGGGAAGGAACTGGGG
TCCTCCCATTTTGGGTGGCGGCGTGTTTCCTCTTTTCGAAGAAAGCGCGA
AAAAGAGGGGGGGGAAGTTTTCCCGTGGGAGAAGGAAATAGAGGGGGCCC
CCCGGGTGGGGCCGAGAATCGACCCCCCT
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