EY710870

Overview
NameEY710870
Unique NameEY710870
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6783 contig Csv1_Contig6783:387..1002. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_LEPIC (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=ispG PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.488e-19
Identity = 42/67 (62.69%), Postives = 51/67 (76.12%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 212
            GV IA+MGCIVNGPGEMADADFGYVG  PGK+ LY GK +V + +  E A + L+QLIKD+  W +P
Sbjct:  594 GVKIAVMGCIVNGPGEMADADFGYVGAGPGKVHLYRGKEIVLKNVPSEIADEKLVQLIKDNELWQDP 660          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_LEPBL (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=ispG PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.488e-19
Identity = 41/66 (62.12%), Postives = 50/66 (75.76%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAE 209
            GV IA+MGCIVNGPGEMADADFGYVG  PGK+ LY GK +V + +  E A + L++LIK HG W +
Sbjct:  594 GVKIAVMGCIVNGPGEMADADFGYVGAGPGKVHLYRGKEIVMKNVPSEVADEKLVELIKKHGLWQD 659          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_LEPBJ (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=ispG PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.488e-19
Identity = 41/66 (62.12%), Postives = 50/66 (75.76%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAE 209
            GV IA+MGCIVNGPGEMADADFGYVG  PGK+ LY GK +V + +  E A + L++LIK HG W +
Sbjct:  594 GVKIAVMGCIVNGPGEMADADFGYVGAGPGKVHLYRGKEIVMKNVPSEVADEKLVELIKKHGLWQD 659          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_PROMM (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Prochlorococcus marinus (strain MIT 9313) GN=ispG PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.473e-19
Identity = 42/68 (61.76%), Postives = 53/68 (77.94%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEPP 215
            G+ IA+MGCIVNGPGEMADAD+GYVG  PG I LY G+  +++ ++  +  DALIQLIKD GRW +PP
Sbjct:  340 GLDIAVMGCIVNGPGEMADADYGYVGKGPGVISLYRGRDEIRK-VSESEGVDALIQLIKDDGRWVDPP 406          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_PORGI (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Porphyromonas gingivalis GN=ispG PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.473e-19
Identity = 43/65 (66.15%), Postives = 50/65 (76.92%), Query Frame = 3
Query:   15 VSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAE 209
            + I IMGCIVNGPGEMADAD+GYVG  PG+IDLY  K  V+RGI  EQA   LI+LIK++G W E
Sbjct:  516 LKIGIMGCIVNGPGEMADADYGYVGAGPGRIDLYKQKICVRRGIPQEQAVQQLIELIKENGDWKE 580          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_CHLFF (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydophila felis (strain Fe/C-56) GN=ispG PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.368e-18
Identity = 41/67 (61.19%), Postives = 50/67 (74.63%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 212
            G+ IA+MGCIVNGPGEMADADFG+VG   G IDLYV  T VK  I ME A + L +L+++HG W +P
Sbjct:  539 GLKIAVMGCIVNGPGEMADADFGFVGSKTGMIDLYVKHTCVKAHIPMEDAEEELFRLLQEHGVWKDP 605          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_CHLCV (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydophila caviae GN=ispG PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.368e-18
Identity = 40/67 (59.70%), Postives = 51/67 (76.12%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 212
            G+ IA+MGCIVNGPGEMAD+DFG+VG   G IDLYV  T VK  I ME A + L++L+++HG W +P
Sbjct:  539 GLKIAVMGCIVNGPGEMADSDFGFVGSKTGMIDLYVKHTCVKAHIPMEDAEEELVRLLQEHGVWKDP 605          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_SYNPX (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain WH8102) GN=ispG PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.224e-17
Identity = 41/67 (61.19%), Postives = 52/67 (77.61%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 212
            G+ IA+MGCIVNGPGEMADAD+GYVG  PG I LY G+  +++ +  E+  +ALIQLIK+ GRW EP
Sbjct:  332 GLDIAVMGCIVNGPGEMADADYGYVGKTPGVISLYRGRDEIRK-VPEEEGVNALIQLIKEDGRWVEP 397          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_SYNJB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. GN=ispG PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.224e-17
Identity = 43/69 (62.32%), Postives = 50/69 (72.46%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEPPA 218
            G+ IA+MGCIVNGPGEMADAD+GYVG  PG I LY GK  VKR +   +   ALI LIK  GRW +PP+
Sbjct:  340 GLDIAVMGCIVNGPGEMADADYGYVGKTPGVISLYRGKEEVKR-VPESEGVQALIDLIKADGRWVDPPS 407          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_CHLTE (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlorobium tepidum GN=ispG PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.224e-17
Identity = 39/67 (58.21%), Postives = 50/67 (74.63%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 212
            G+ I IMGCIVNGPGEMADADFGYVG   G++ LYVGK  V+  I   +A + LI+LI+ +G+W +P
Sbjct:  679 GLKIGIMGCIVNGPGEMADADFGYVGSGKGRVSLYVGKECVEENIPEAEALERLIELIRQNGKWVDP 745          
The following BLAST results are available for this feature:
BLAST of EY710870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
ISPG_LEPIC6.488e-1962.694-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_LEPBL6.488e-1962.124-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_LEPBJ6.488e-1962.124-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PROMM8.473e-1961.764-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PORGI8.473e-1966.154-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLFF9.368e-1861.194-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLCV9.368e-1859.704-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNPX1.224e-1761.194-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNJB1.224e-1762.324-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLTE1.224e-1758.214-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-001-B08-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710870 ID=EY710870; Name=EY710870; organism=Citrus sinensis; type=EST; length=616bp
CCACGCGTCCGGGTGTTTCGATTGCTATCATGGGTTGCATTGTCAATGGA
CCTGGAGAGATGGCTGATGCAGACTTTGGGTATGTTGGTGGGGCTCCTGG
AAAGATTGACCTGTATGTCGGGAAGACTGTGGTGAAGCGTGGTATTGCAA
TGGAGCAGGCAACCGATGCCTTGATCCAACTAATAAAGGATCACGGGCGC
TGGGCGGAGCCTCCCGCAGAAGAGTAGGATATGGTAATTTCCATCAACAG
ATATACAATAAAGACTCAGTTGAAGGGAGACCACCATACCCCAGCTGTTG
TATATTAAATTCCACATGGCACAAAAGACTACACAGTAATAGCAGATCAT
ATAAATTTTTCCGTCAGATGGAGCATCTATAGTTCACCAAGGAAAGCGTT
ATATGTTCCTCAAGTGTATGCAGATAAAGCTGTAACACTCCCATTAGTAA
CAAGTCCAATGTTTCCTACATTTTGTTTTCTTACACAAACCAAATAATAA
TGTATTTCCTATGGCATATATTAGCTTCTAGTGAAACCACTTGAGTTATG
TCTGTGGGTTTCTCTTCTATGAGAAATGTTTCAGAAAATATACCTTCCTT
GAAAAANAAAAANNAA
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