EY710870

Overview
NameEY710870
Unique NameEY710870
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6783 contig Csv1_Contig6783:387..1002. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_SYNJA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain JA-3-3Ab) GN=ispG PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.087e-17
Identity = 42/68 (61.76%), Postives = 50/68 (73.53%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEPP 215
            G+ IA+MGCIVNGPGEMADAD+GYVG  PG I LY GK  VK+ +   +   ALI+LIK  GRW +PP
Sbjct:  340 GLDIAVMGCIVNGPGEMADADYGYVGKTPGYISLYRGKEEVKK-VPESEGVQALIELIKADGRWVDPP 406          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_SYNSC (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain CC9605) GN=ispG PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.649e-17
Identity = 40/67 (59.70%), Postives = 51/67 (76.12%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 212
            G+ IA+MGCIVNGPGEMADAD+GYVG  PG I LY G+  +++ +   +  +ALIQLIK+ GRW EP
Sbjct:  332 GLDIAVMGCIVNGPGEMADADYGYVGKTPGVISLYRGRDEIRK-VPEAEGVEALIQLIKEDGRWVEP 397          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_SYNP6 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ispG PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.649e-17
Identity = 42/67 (62.69%), Postives = 49/67 (73.13%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 212
            G+ IA+MGCIVNGPGEMADAD+GYVG  PG I LY G+  +KR +  EQ  + LI LIK  GRW EP
Sbjct:  338 GLDIAVMGCIVNGPGEMADADYGYVGKTPGTIALYRGRDEIKR-VPEEQGVEELINLIKADGRWVEP 403          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_SYNE7 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus elongatus (strain PCC 7942) GN=ispG PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.649e-17
Identity = 42/67 (62.69%), Postives = 49/67 (73.13%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 212
            G+ IA+MGCIVNGPGEMADAD+GYVG  PG I LY G+  +KR +  EQ  + LI LIK  GRW EP
Sbjct:  338 GLDIAVMGCIVNGPGEMADADYGYVGKTPGTIALYRGRDEIKR-VPEEQGVEELINLIKADGRWVEP 403          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_SYNS3 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain CC9311) GN=ispG PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.353e-16
Identity = 39/67 (58.21%), Postives = 50/67 (74.63%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 212
            G+ IA+MGCIVNGPGEMADAD+GYVG  PG I LY  +  +++ +   +  +AL+QLIKD GRW EP
Sbjct:  332 GLDIAVMGCIVNGPGEMADADYGYVGKGPGVIALYRNRDEIRK-VPESEGVEALVQLIKDDGRWVEP 397          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_SYNP2 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ispG PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.014e-16
Identity = 39/68 (57.35%), Postives = 49/68 (72.06%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEPP 215
            G+ IA+MGCIVNGPGEMADAD+GYVG  PG I LY G+  +++ +   Q  + LI LIK  GRW +PP
Sbjct:  339 GLDIAVMGCIVNGPGEMADADYGYVGKTPGVISLYRGREEIRK-VPEAQGVEELINLIKADGRWVDPP 405          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_PROMP (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=ispG PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.014e-16
Identity = 41/67 (61.19%), Postives = 50/67 (74.63%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 212
            G+ IAIMGCIVNGPGEMADAD+GYVG   G I LY  K  +KR +  ++  DALI+LIKD G+W +P
Sbjct:  340 GLDIAIMGCIVNGPGEMADADYGYVGKGKGTIALYRRKEEIKR-VPEDEGVDALIRLIKDDGKWIDP 405          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_PARD8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=ispG PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.014e-16
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRW 203
            G+ I IMGCIVNGPGEMADAD+GYVG   G+I LY GK  V + I  E A + L+QLIK++G W
Sbjct:  546 GLKIGIMGCIVNGPGEMADADYGYVGAGRGQISLYKGKECVLKNIPEEDAVERLVQLIKENGDW 609          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_GLOVI (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Gloeobacter violaceus GN=ispG PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.014e-16
Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 212
            G++IA+MGCIVNGPGEMADAD+GYVG  PG I LY G+  +K+ +   +  +AL+ LIK  GRW +P
Sbjct:  331 GLNIAVMGCIVNGPGEMADADYGYVGKTPGTISLYRGREEIKK-VPEARGVEALVDLIKSDGRWVDP 396          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_THEEB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Thermosynechococcus elongatus (strain BP-1) GN=ispG PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.768e-16
Identity = 39/67 (58.21%), Postives = 50/67 (74.63%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 212
            G++IA+MGCIVNGPGEMADAD+GYVG  PG I LY G+  VK+ +   +   AL++LIK  GRW +P
Sbjct:  337 GLNIAVMGCIVNGPGEMADADYGYVGKQPGYISLYRGREEVKK-VPEAEGVAALVELIKADGRWVDP 402          
The following BLAST results are available for this feature:
BLAST of EY710870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
ISPG_SYNJA2.087e-1761.764-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNSC4.649e-1759.704-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNP64.649e-1762.694-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNE74.649e-1762.694-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNS31.353e-1658.214-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNP23.014e-1657.354-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PROMP3.014e-1661.194-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PARD83.014e-1660.944-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_GLOVI3.014e-1656.724-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_THEEB8.768e-1658.214-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-001-B08-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710870 ID=EY710870; Name=EY710870; organism=Citrus sinensis; type=EST; length=616bp
CCACGCGTCCGGGTGTTTCGATTGCTATCATGGGTTGCATTGTCAATGGA
CCTGGAGAGATGGCTGATGCAGACTTTGGGTATGTTGGTGGGGCTCCTGG
AAAGATTGACCTGTATGTCGGGAAGACTGTGGTGAAGCGTGGTATTGCAA
TGGAGCAGGCAACCGATGCCTTGATCCAACTAATAAAGGATCACGGGCGC
TGGGCGGAGCCTCCCGCAGAAGAGTAGGATATGGTAATTTCCATCAACAG
ATATACAATAAAGACTCAGTTGAAGGGAGACCACCATACCCCAGCTGTTG
TATATTAAATTCCACATGGCACAAAAGACTACACAGTAATAGCAGATCAT
ATAAATTTTTCCGTCAGATGGAGCATCTATAGTTCACCAAGGAAAGCGTT
ATATGTTCCTCAAGTGTATGCAGATAAAGCTGTAACACTCCCATTAGTAA
CAAGTCCAATGTTTCCTACATTTTGTTTTCTTACACAAACCAAATAATAA
TGTATTTCCTATGGCATATATTAGCTTCTAGTGAAACCACTTGAGTTATG
TCTGTGGGTTTCTCTTCTATGAGAAATGTTTCAGAAAATATACCTTCCTT
GAAAAANAAAAANNAA
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