EY710870

Overview
NameEY710870
Unique NameEY710870
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6783 contig Csv1_Contig6783:387..1002. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_CYAP8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Cyanothece sp. (strain PCC 8801) GN=ispG PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.768e-16
Identity = 40/67 (59.70%), Postives = 48/67 (71.64%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 212
            G+ IA+MGCIVNGPGEMADAD+GYVG   G I LY G+  +KR +  +Q    LI+LIK  GRW EP
Sbjct:  341 GLDIAVMGCIVNGPGEMADADYGYVGKQAGYISLYRGREEIKR-VPEDQGVQELIELIKADGRWVEP 406          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_ANAVT (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ispG PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.145e-15
Identity = 38/67 (56.72%), Postives = 49/67 (73.13%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 212
            G+ IA+MGCIVNGPGEMADAD+GYVG  PG I LY G+  +K+ +  ++  + LI LIK  GRW +P
Sbjct:  343 GLDIAVMGCIVNGPGEMADADYGYVGKTPGYISLYRGREEIKK-VPEDKGVEELINLIKADGRWVDP 408          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_ANASP (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Anabaena sp. (strain PCC 7120) GN=ispG PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.145e-15
Identity = 38/67 (56.72%), Postives = 49/67 (73.13%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 212
            G+ IA+MGCIVNGPGEMADAD+GYVG  PG I LY G+  +K+ +  ++  + LI LIK  GRW +P
Sbjct:  343 GLDIAVMGCIVNGPGEMADADYGYVGKTPGYISLYRGREEIKK-VPEDKGVEELINLIKADGRWVDP 408          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_ACAM1 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Acaryochloris marina (strain MBIC 11017) GN=ispG PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.145e-15
Identity = 39/67 (58.21%), Postives = 48/67 (71.64%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 212
            G+ IA+MGCIVNGPGEMADAD+GYVG  PG I LY G+  VK+ +   +  + LI LIK  GRW +P
Sbjct:  342 GLDIAVMGCIVNGPGEMADADYGYVGKQPGYISLYRGREEVKK-VPETEGVEELINLIKSDGRWVDP 407          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_CYAP4 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ispG PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.551e-15
Identity = 39/67 (58.21%), Postives = 48/67 (71.64%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 212
            G+ IA+MGCIVNGPGEMADAD+GYVG   G I LY G+  VK+ +  +Q  + LI LIK  GRW +P
Sbjct:  342 GLDIAVMGCIVNGPGEMADADYGYVGKQAGHISLYRGREEVKK-VPEDQGVEELINLIKADGRWVDP 407          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_TRIEI (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Trichodesmium erythraeum (strain IMS101) GN=ispG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.352e-15
Identity = 39/67 (58.21%), Postives = 47/67 (70.15%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 212
            G+ IA+MGCIVNGPGEMADAD+GYVG   G I LY G+  +K+ +   Q  + LI LIK  GRW EP
Sbjct:  341 GLDIAVMGCIVNGPGEMADADYGYVGKQSGYISLYRGREEIKK-VHESQGVEELINLIKADGRWVEP 406          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_SYNS9 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechococcus sp. (strain CC9902) GN=ispG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.352e-15
Identity = 37/67 (55.22%), Postives = 50/67 (74.63%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 212
            G+ IA+MGCIVNGPGEMADAD+GYVG  PG I LY G+  +++ +  ++   ALIQLI++ G W +P
Sbjct:  332 GLDIAVMGCIVNGPGEMADADYGYVGKGPGIIALYRGREEIRK-VPEKEGVQALIQLIQEDGLWVDP 397          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_NOSP7 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ispG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.352e-15
Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 212
            G+ IA+MGCIVNGPGEMADAD+GYVG  PG I LY G+  +K+ +  ++  + LI LIK   RW EP
Sbjct:  343 GLDIAVMGCIVNGPGEMADADYGYVGKTPGYISLYRGREEIKK-VPEDKGVEELINLIKADERWVEP 408          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_CYAP7 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Cyanothece sp. (strain PCC 7424) GN=ispG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.352e-15
Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 212
            G+ IA+MGCIVNGPGEMADAD+GYVG   G I LY G+  +K+ +  +Q  + LI LIK  GRW +P
Sbjct:  341 GLDIAVMGCIVNGPGEMADADYGYVGKQAGYISLYRGREEIKK-VPEDQGVEELINLIKADGRWVDP 406          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_BACV8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=ispG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.352e-15
Identity = 38/66 (57.58%), Postives = 48/66 (72.73%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAE 209
            G+ I IMGCIVNGPGEMADAD+GYVG   GKI LY  K  +++ I  +QA + LI+LIK +G + E
Sbjct:  548 GLKIGIMGCIVNGPGEMADADYGYVGAGRGKISLYKKKECIEKNIPEDQAVEKLIELIKANGDYTE 613          
The following BLAST results are available for this feature:
BLAST of EY710870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
ISPG_CYAP88.768e-1659.704-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_ANAVT1.145e-1556.724-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_ANASP1.145e-1556.724-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_ACAM11.145e-1558.214-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CYAP42.551e-1558.214-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_TRIEI4.352e-1558.214-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNS94.352e-1555.224-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_NOSP74.352e-1556.724-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CYAP74.352e-1556.724-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BACV84.352e-1557.584-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-001-B08-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710870 ID=EY710870; Name=EY710870; organism=Citrus sinensis; type=EST; length=616bp
CCACGCGTCCGGGTGTTTCGATTGCTATCATGGGTTGCATTGTCAATGGA
CCTGGAGAGATGGCTGATGCAGACTTTGGGTATGTTGGTGGGGCTCCTGG
AAAGATTGACCTGTATGTCGGGAAGACTGTGGTGAAGCGTGGTATTGCAA
TGGAGCAGGCAACCGATGCCTTGATCCAACTAATAAAGGATCACGGGCGC
TGGGCGGAGCCTCCCGCAGAAGAGTAGGATATGGTAATTTCCATCAACAG
ATATACAATAAAGACTCAGTTGAAGGGAGACCACCATACCCCAGCTGTTG
TATATTAAATTCCACATGGCACAAAAGACTACACAGTAATAGCAGATCAT
ATAAATTTTTCCGTCAGATGGAGCATCTATAGTTCACCAAGGAAAGCGTT
ATATGTTCCTCAAGTGTATGCAGATAAAGCTGTAACACTCCCATTAGTAA
CAAGTCCAATGTTTCCTACATTTTGTTTTCTTACACAAACCAAATAATAA
TGTATTTCCTATGGCATATATTAGCTTCTAGTGAAACCACTTGAGTTATG
TCTGTGGGTTTCTCTTCTATGAGAAATGTTTCAGAAAATATACCTTCCTT
GAAAAANAAAAANNAA
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