EY710870

Overview
NameEY710870
Unique NameEY710870
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6783 contig Csv1_Contig6783:387..1002. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_MICAN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Microcystis aeruginosa (strain NIES-843) GN=ispG PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.683e-15
Identity = 39/67 (58.21%), Postives = 46/67 (68.66%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 212
            G+ IA+MGCIVNGPGEMADAD+GYVG   G I LY G+  +KR +   +    LI LIK  GRW EP
Sbjct:  341 GLDIAVMGCIVNGPGEMADADYGYVGKQAGYISLYRGREEIKR-VPESEGVSELINLIKADGRWVEP 406          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_CYAA5 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Cyanothece sp. (strain ATCC 51142) GN=ispG PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.683e-15
Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 212
            G+ IA+MGCIVNGPGEMADAD+GYVG   G I LY G+  +K+ +  +Q  + LI LIK  GRW +P
Sbjct:  339 GLDIAVMGCIVNGPGEMADADYGYVGKQAGYISLYRGREEIKK-VPEDQGVEELINLIKADGRWIDP 404          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_BACFR (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacteroides fragilis GN=ispG PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.683e-15
Identity = 38/66 (57.58%), Postives = 48/66 (72.73%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAE 209
            G+ I IMGCIVNGPGEMADAD+GYVG   GKI LY  K  +++ I  E+A + LI+LIK +G + E
Sbjct:  547 GLKIGIMGCIVNGPGEMADADYGYVGAGRGKISLYKQKECIEKNIPEEEAVEKLIELIKANGDYEE 612          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_BACFN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=ispG PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.683e-15
Identity = 38/66 (57.58%), Postives = 48/66 (72.73%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAE 209
            G+ I IMGCIVNGPGEMADAD+GYVG   GKI LY  K  +++ I  E+A + LI+LIK +G + E
Sbjct:  547 GLKIGIMGCIVNGPGEMADADYGYVGAGRGKISLYKQKECIEKNIPEEEAVEKLIELIKANGDYEE 612          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_PROMA (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Prochlorococcus marinus GN=ispG PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.160e-14
Identity = 35/67 (52.24%), Postives = 49/67 (73.13%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 212
            G+ IA+MGCIVNGPGEMADAD+GYVG   G I LY G+  +++ +  ++   AL++LIK  G+W +P
Sbjct:  342 GLDIAVMGCIVNGPGEMADADYGYVGKGKGIIALYRGREEIRK-VPEDEGVSALVELIKSDGKWIDP 407          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_BACTN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Bacteroides thetaiotaomicron GN=ispG PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.684e-14
Identity = 35/60 (58.33%), Postives = 45/60 (75.00%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKD 191
            G+ I IMGCIVNGPGEMADAD+GYVG   GKI LY GK  V++ I  E+A + L++ I++
Sbjct:  547 GLKIGIMGCIVNGPGEMADADYGYVGAGRGKISLYKGKVCVEKNIPEEEAVERLLEFIRN 606          
BLAST of EY710870 vs. ExPASy Swiss-Prot
Match: ISPG_SYNY3 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Synechocystis sp. (strain PCC 6803) GN=ispG PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.811e-14
Identity = 38/67 (56.72%), Postives = 45/67 (67.16%), Query Frame = 3
Query:   12 GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 212
            G+ IA+MGCIVNGPGEMADAD+GYVG   G I LY G+  +KR +        LI LIK  GRW +P
Sbjct:  338 GLDIAVMGCIVNGPGEMADADYGYVGKQAGYIALYRGREEIKR-VPETDGVQELINLIKADGRWVDP 403          
The following BLAST results are available for this feature:
BLAST of EY710870 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
ISPG_MICAN5.683e-1558.214-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CYAA55.683e-1556.724-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BACFR5.683e-1557.584-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BACFN5.683e-1557.584-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_PROMA2.160e-1452.244-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_BACTN3.684e-1458.334-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_SYNY34.811e-1456.724-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-001-B08-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710870 ID=EY710870; Name=EY710870; organism=Citrus sinensis; type=EST; length=616bp
CCACGCGTCCGGGTGTTTCGATTGCTATCATGGGTTGCATTGTCAATGGA
CCTGGAGAGATGGCTGATGCAGACTTTGGGTATGTTGGTGGGGCTCCTGG
AAAGATTGACCTGTATGTCGGGAAGACTGTGGTGAAGCGTGGTATTGCAA
TGGAGCAGGCAACCGATGCCTTGATCCAACTAATAAAGGATCACGGGCGC
TGGGCGGAGCCTCCCGCAGAAGAGTAGGATATGGTAATTTCCATCAACAG
ATATACAATAAAGACTCAGTTGAAGGGAGACCACCATACCCCAGCTGTTG
TATATTAAATTCCACATGGCACAAAAGACTACACAGTAATAGCAGATCAT
ATAAATTTTTCCGTCAGATGGAGCATCTATAGTTCACCAAGGAAAGCGTT
ATATGTTCCTCAAGTGTATGCAGATAAAGCTGTAACACTCCCATTAGTAA
CAAGTCCAATGTTTCCTACATTTTGTTTTCTTACACAAACCAAATAATAA
TGTATTTCCTATGGCATATATTAGCTTCTAGTGAAACCACTTGAGTTATG
TCTGTGGGTTTCTCTTCTATGAGAAATGTTTCAGAAAATATACCTTCCTT
GAAAAANAAAAANNAA
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