EY710868

Overview
NameEY710868
Unique NameEY710868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_XYLFA (Malate dehydrogenase OS=Xylella fastidiosa GN=mdh PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 3.533e-31
Identity = 90/215 (41.86%), Postives = 118/215 (54.88%), Query Frame = 3
Query:   63 KEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPA--------------NPMH*F*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVN 659
            K  VRV VTGAA QIGY+L+  IA G M G D+PVIL ML++P   A  AL GV MEL D AFPLL G+  T +   A    ++A++VG  PR  GM+RKD++ +N  I+ A  +AL   A  + KVLVV NPA              NP H F   LR   L  N  L Q+ +         +   PV++ + +I+WGNHS + YPD    T +
Sbjct:    2 KSLVRVAVTGAAGQIGYSLLFRIAAGEMFGKDRPVILQMLELPDEKAQAALKGVMMELEDCAFPLLAGMVGTDNPDIAFKDADVALLVGSRPRGPGMERKDLLMENAKIFTAQGAALNKVARRDVKVLVVGNPANTNAYIAMKSAPDLNPKH-FTAMLR---LDHNRALSQLST---------KLSKPVANIEKLIVWGNHSPTMYPDYRFATAD 203          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_CORGB (Malate dehydrogenase OS=Corynebacterium glutamicum (strain R) GN=mdh PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.533e-31
Identity = 80/207 (38.65%), Postives = 116/207 (56.04%), Query Frame = 3
Query:   75 RVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPAN-------------PMH*F*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTV 656
            +V VTGAA QI Y+L+  IA G + GT+ PV L +L+IP A     GV MEL+D+AFPLL+ +  T DA EA  G N A +VG  PR +G +R D+++ N  I+     A+  +AA + +VLVV NPAN             P   F   +R   L  N  + Q+ +  G G+         ++  N+++WGNHS++Q+PD+   TV
Sbjct:   11 KVTVTGAAGQISYSLLWRIANGEVFGTETPVELKLLEIPQALGGAEGVAMELLDSAFPLLRNITITADANEAFDGANAAFLVGAKPRGKGEERADLLANNGKIFGPQGKAINDNAADDIRVLVVGNPANTNALIASAAAPDVPASRFNAMMR---LDHNRAISQLATKLGRGS---------AEFNNIVVWGNHSATQFPDITYATV 205          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH2_RHOFD (Malate dehydrogenase 2 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=mdh2 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.614e-31
Identity = 85/207 (41.06%), Postives = 117/207 (56.52%), Query Frame = 3
Query:   57 MAKEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPAN-----PMH*F*KNLRHQSLLRNY-MLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVN 659
            M + PVRV VTGAA ++ YAL+  IA G MLG DQPV L + D+P A +A+ GV MEL D AFPLL  + AT D V A +   IA++V   PR  G +R +V++ N  I+ A  + +  HA P+CKVLVV NP N      M    K  R  +  RN+  L ++   + +     +T  PV   K + +WGNHS + Y D    T++
Sbjct:    1 MNQAPVRVTVTGAAGRVAYALLFRIASGDMLGADQPVQLVLFDLPHAMKAMQGVVMELEDCAFPLLTEIIATDDPVLAFSDTQIALLVSARPRAVGAERLEVLADNAKIFAAQGAVIGRHANPDCKVLVVGNPCNTNACVAMKAAQKFSRIPA--RNFAALLRLDHNRALAQLALKTGRPVGGVKRLAVWGNHSPTVYADDRFTTID 205          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH2_BURTA (Malate dehydrogenase 2 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=mdh2 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.614e-31
Identity = 77/210 (36.67%), Postives = 115/210 (54.76%), Query Frame = 3
Query:   57 MAKEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANPMH*F*KNLRHQSLLRNYMLD----------QIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTV 656
            M  E  R+ V+GAA QI Y+L+  IA+G +LG DQPVIL +LD+P A  A+ GV MEL D AFPLLK +   TD   A    + A +VG  PR +GM+R+D++++N +I++    AL   A+ + KVLVV NPAN          + S+LR +  D          ++   + +          V    ++++WGNHS + +PD     +
Sbjct:    1 MNTEAKRIAVSGAAGQIAYSLLFRIAQGDLLGEDQPVILQLLDLPQAYGAVQGVVMELQDCAFPLLKEIQVATDPHAAFLNADYAFLVGSKPRTKGMERRDLLAENAAIFRTQGRALNEAASRDVKVLVVGNPAN---------TNASILRRFAPDLPDDAISAMIRLDHNRAVSMLAQRCNVDVDSIADMVVWGNHSPTMFPDYRHARI 201          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_KOCRD (Malate dehydrogenase OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=mdh PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.026e-31
Identity = 80/201 (39.80%), Postives = 113/201 (56.22%), Query Frame = 3
Query:   57 MAKEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANPMH*F-*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTV 656
            M+  PV V VTGAA QIGY+L+  IA G MLG  +PV L +L+IP A  AL G  MEL D AFPLL  V+  +D  E   G  +A++VG  PR +GM+R D++  N +I+     AL   A  + +V+V  NPAN       +N       R   L ++   + +     +T   V D K++ +WGNHS++QYPD++   V
Sbjct:    1 MSLTPVTVAVTGAAGQIGYSLLFRIAHGDMLGRQRPVRLRLLEIPSALPALEGTVMELQDCAFPLLADVEIGSDPREVFDGAQLALLVGARPRTKGMERGDLLEANGAIFTEQGRALNDVADHDVRVVVTGNPANTNALIAQRNAPDIPASRFSALTRLDHNRAVAMLAAQTGASVDDVKHLSVWGNHSATQYPDLDHARV 201          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_LEGPL (Malate dehydrogenase OS=Legionella pneumophila (strain Lens) GN=mdh PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.028e-30
Identity = 80/202 (39.60%), Postives = 110/202 (54.46%), Query Frame = 3
Query:   57 MAKEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANPMH*F*KN-LRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVN 659
            M    VRV VTGAA QIGYALV  IA G M G +  V L++L++ PA  +L GV MEL D AFPLLK +  T D  +A  GVN A++VG  PRKQGM+R D++  N  I+     A+  +A+ + +V VV NP N       N  +     R Y +  +   +       +    ++    + IWGNHS++QYPD     +N
Sbjct:    1 MTNNRVRVAVTGAAGQIGYALVFRIASGQMFGPNTEVELNLLELEPALPSLEGVAMELDDCAFPLLKRIVCTADLNKAMDGVNWALLVGSVPRKQGMERSDLLQINGGIFTKQGQAINDYASDDVRVFVVGNPCNTNCLIAMNHAKDVPSDRFYAMTTLDELRARTQLAKKAGVDITAVTQMTIWGNHSATQYPDFYNAKIN 202          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_LEGPH (Malate dehydrogenase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=mdh PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.028e-30
Identity = 80/202 (39.60%), Postives = 110/202 (54.46%), Query Frame = 3
Query:   57 MAKEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANPMH*F*KN-LRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVN 659
            M    VRV VTGAA QIGYALV  IA G M G +  V L++L++ PA  +L GV MEL D AFPLLK +  T D  +A  GVN A++VG  PRKQGM+R D++  N  I+     A+  +A+ + +V VV NP N       N  +     R Y +  +   +       +    ++    + IWGNHS++QYPD     +N
Sbjct:    1 MTNNRVRVAVTGAAGQIGYALVFRIASGQMFGPNTEVELNLLELEPALPSLEGVAMELDDCAFPLLKRIVCTADLNKAMDGVNWALLVGSVPRKQGMERSDLLQINGGIFTKQGQAINDYASDDVRVFVVGNPCNTNCLIAMNHAKDVPSDRFYAMTTLDELRARTQLAKKAGVDITAVTQMTIWGNHSATQYPDFYNAKIN 202          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_LEGPA (Malate dehydrogenase OS=Legionella pneumophila (strain Paris) GN=mdh PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.028e-30
Identity = 80/202 (39.60%), Postives = 110/202 (54.46%), Query Frame = 3
Query:   57 MAKEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANPMH*F*KN-LRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVN 659
            M    VRV VTGAA QIGYALV  IA G M G +  V L++L++ PA  +L GV MEL D AFPLLK +  T D  +A  GVN A++VG  PRKQGM+R D++  N  I+     A+  +A+ + +V VV NP N       N  +     R Y +  +   +       +    ++    + IWGNHS++QYPD     +N
Sbjct:    1 MTNNRVRVAVTGAAGQIGYALVFRIASGQMFGPNTEVELNLLELEPALPSLEGVAMELDDCAFPLLKRIVCTADLNKAMDGVNWALLVGSVPRKQGMERSDLLQINGGIFTKQGQAINDYASDDVRVFVVGNPCNTNCLIAMNHAKDVPSDRFYAMTTLDELRARTQLAKKAGVDITAVTQMTIWGNHSATQYPDFYNAKIN 202          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_XYLFT (Malate dehydrogenase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=mdh PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.342e-30
Identity = 91/215 (42.33%), Postives = 117/215 (54.42%), Query Frame = 3
Query:   63 KEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPA--------------NPMH*F*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVN 659
            K  VRV VTGAA QIGY+L+  IA G M G D+PVIL ML++P   A  AL GV MEL D AFPLL G+  T +   A    + A++VG  PR  GM+RKD++ +N  I+ A  +AL   A  + KVLVV NPA              NP H F   LR   L  N  L Q+ +  G          PV++ + +I+WGNHS + YPD    T +
Sbjct:    2 KALVRVAVTGAAGQIGYSLLFRIAAGEMFGKDRPVILQMLELPDEKAQAALKGVMMELEDCAFPLLAGMVVTDNPDIAFKDADAALLVGSRPRGPGMERKDLLMENAKIFTAQGAALNKVARRDVKVLVVGNPANTNAYIAMKSAPDLNPKH-FTAMLR---LDHNRALSQLSTKLG---------KPVANIEKLIVWGNHSPTMYPDYRFATAD 203          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_XYLF2 (Malate dehydrogenase OS=Xylella fastidiosa (strain M23) GN=mdh PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.342e-30
Identity = 91/215 (42.33%), Postives = 117/215 (54.42%), Query Frame = 3
Query:   63 KEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPA--------------NPMH*F*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVN 659
            K  VRV VTGAA QIGY+L+  IA G M G D+PVIL ML++P   A  AL GV MEL D AFPLL G+  T +   A    + A++VG  PR  GM+RKD++ +N  I+ A  +AL   A  + KVLVV NPA              NP H F   LR   L  N  L Q+ +  G          PV++ + +I+WGNHS + YPD    T +
Sbjct:    2 KALVRVAVTGAAGQIGYSLLFRIAAGEMFGKDRPVILQMLELPDEKAQAALKGVMMELEDCAFPLLAGMVVTDNPDIAFKDADAALLVGSRPRGPGMERKDLLMENAKIFTAQGAALNKVARRDVKVLVVGNPANTNAYIAMKSAPDLNPKH-FTAMLR---LDHNRALSQLSTKLG---------KPVANIEKLIVWGNHSPTMYPDYRFATAD 203          
The following BLAST results are available for this feature:
BLAST of EY710868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
MDH_XYLFA3.533e-3141.86Malate dehydrogenase OS=Xylella fastidiosa GN=mdh ... [more]
MDH_CORGB3.533e-3138.65Malate dehydrogenase OS=Corynebacterium glutamicum... [more]
MDH2_RHOFD4.614e-3141.06Malate dehydrogenase 2 OS=Rhodoferax ferrireducens... [more]
MDH2_BURTA4.614e-3136.67Malate dehydrogenase 2 OS=Burkholderia thailandens... [more]
MDH_KOCRD6.026e-3139.80Malate dehydrogenase OS=Kocuria rhizophila (strain... [more]
MDH_LEGPL1.028e-3039.60Malate dehydrogenase OS=Legionella pneumophila (st... [more]
MDH_LEGPH1.028e-3039.60Malate dehydrogenase OS=Legionella pneumophila sub... [more]
MDH_LEGPA1.028e-3039.60Malate dehydrogenase OS=Legionella pneumophila (st... [more]
MDH_XYLFT1.342e-3042.33Malate dehydrogenase OS=Xylella fastidiosa (strain... [more]
MDH_XYLF21.342e-3042.33Malate dehydrogenase OS=Xylella fastidiosa (strain... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-001-B06-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710868 ID=EY710868; Name=EY710868; organism=Citrus sinensis; type=EST; length=862bp
CCACGCGTCCGGGAAAAATCTTTTCGTTTCCTGTGATACATCTCTGATCC
GAACTAATGGCCAAGGAACCAGTTCGCGTTCTCGTCACCGGCGCCGCAAG
GCAAATTGGATATGCACTTGTCCCCATGATTGCTAGGGGAGTGATGTTGG
GTACTGACCAGCCTGTGATTCTGCACATGCTTGATATCCCACCTGCAGCA
GAGGCATTGAATGGTGTGAAGATGGAGTTGGTTGATGCTGCATTCCCTCT
TCTTAAAGGTGTTGATGCTACAACTGATGCTGTTGAGGCATGCACTGGGG
TCAATATTGCCGTTATGGTTGGTGGCTTTCCAAGAAAACAAGGAATGGAT
AGAAAAGATGTGATGTCAAAGAACGTTTCAATCTACAAGGCTCATGCTTC
TGCCCTGGAGCATCACGCAGCTCCGAACTGCAAGGTTCTAGTTGTCGCTA
ACCCTGCAAACCCAATGCATTGATTCTGAAAGAATTTGCGCCATCAATCC
CTGCTAAGAAATTACATGCTTGACCAGATTGGATCATAACAGGGCATTGG
GACAAATATCTGAGAAACTGAATGTCCAGTATCTGATGCTAAGAATGTGA
TTATTTGGGGAAATCATTCATCATCTCAGTACCCTGATGTCAACCAGTGC
ACTGTCAATACTGCCACTGGGGAAAACCTGTCCATGAGCTTGTCAGGATT
ATGCATCGTTGAATGGAGATTCATAACCACAGCCAACAACGTGGTGCTGC
ATCATCAACTCCAAAAGCTCCCAAGGGTCTGCTGCTGCAATTCCGCTTTG
ACCTACCCGGATTGGGTTCTTGAACCCTTAGGACCTGGGCCCCAGGGGGT
TACCTGATGGTC
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