EY710868

Overview
NameEY710868
Unique NameEY710868
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDHC_HUMAN (Malate dehydrogenase, cytoplasmic OS=Homo sapiens GN=MDH1 PE=1 SV=4)

HSP 1 Score: 156.762 bits (395), Expect = 1.481e-37
Identity = 95/210 (45.24%), Postives = 121/210 (57.62%), Query Frame = 3
Query:   66 EPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPAN-------------PMH*F*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTV 656
            EP+RVLVTGAA QI Y+L+  I  G + G DQP+IL +LDI P    L+GV MEL D A PLLK V AT     A   +++A++VG  PR++GM+RKD++  NV I+K+  +AL+ +A  + KV+VV NPAN             P   F    R   L  N    QI    G+  N         D KNVIIWGNHSS+QYPDVN   V
Sbjct:    3 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEDVAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKSQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTR---LDHNRAKAQIALKLGVTAN---------DVKNVIIWGNHSSTQYPDVNHAKV 200          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDHC_RAT (Malate dehydrogenase, cytoplasmic OS=Rattus norvegicus GN=Mdh1 PE=1 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 1.934e-37
Identity = 92/201 (45.77%), Postives = 119/201 (59.20%), Query Frame = 3
Query:   66 EPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANPMH*F*KNLRHQSLLRNYM----LDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTV 656
            EP+RVLVTGAA QI Y+L+  I  G + G DQP+IL +LDI P    L+GV MEL D A PLL+ V AT     A   +++AV+VG  PR++GM+RKD++  NV I+K+  +ALE +A  + KV+VV NPAN                N+     LD   +   I   +  T     D KNVIIWGNHSS+QYPDVN   V
Sbjct:    3 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLQDVIATDKEEVAFKDLDVAVLVGSMPRREGMERKDLLKANVKIFKSQGAALEKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKSQIALKLGVT---ADDVKNVIIWGNHSSTQYPDVNHAKV 200          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_RALSO (Malate dehydrogenase OS=Ralstonia solanacearum GN=mdh PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.526e-37
Identity = 98/216 (45.37%), Postives = 124/216 (57.41%), Query Frame = 3
Query:   57 MAKEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPP--AAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPAN-------------PMH*F*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVN 659
            MAK P+RV VTGAA QIGYAL+  IA G MLG DQPVIL +L+IP   A +AL GV ME+ D AFPLL G++A  D + A   V++A++VG  PR  GM+RKD++S N  I+ A   AL   A+ N KVLVV NPAN             P   F   LR   L  N  L QI +         +T  PVS  + + +WGNHS + Y D    T++
Sbjct:    1 MAKAPMRVAVTGAAGQIGYALLFRIAAGEMLGKDQPVILQLLEIPDEKAQKALKGVMMEIEDCAFPLLAGMEAHADPMTAFKDVDVALLVGARPRGPGMERKDLLSANAQIFTAQGKALNAVASRNVKVLVVGNPANTNAYIAMKSAPDLPRENFTAMLR---LDHNRALSQIAA---------KTGKPVSSIEKLFVWGNHSPTMYADYRYATID 204          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDHC_MOUSE (Malate dehydrogenase, cytoplasmic OS=Mus musculus GN=Mdh1 PE=1 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 2.526e-37
Identity = 92/201 (45.77%), Postives = 119/201 (59.20%), Query Frame = 3
Query:   66 EPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANPMH*F*KNLRHQSLLRNYM----LDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTV 656
            EP+RVLVTGAA QI Y+L+  I  G + G DQP+IL +LDI P    L+GV MEL D A PLL+ V AT     A   +++AV+VG  PR++GM+RKD++  NV I+K+  +ALE +A  + KV+VV NPAN                N+     LD   +   I   +  T     D KNVIIWGNHSS+QYPDVN   V
Sbjct:    3 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLQDVIATDKEEIAFKDLDVAVLVGSMPRREGMERKDLLKANVKIFKSQGTALEKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKSQIALKLGVT---ADDVKNVIIWGNHSSTQYPDVNHAKV 200          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDHC_CHICK (Malate dehydrogenase, cytoplasmic OS=Gallus gallus GN=MDH1 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.526e-37
Identity = 94/211 (44.55%), Postives = 122/211 (57.82%), Query Frame = 3
Query:   66 EPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPAN-------------PMH*F*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVN 659
            EP+RVLVTGAA QI Y+L+  IA+G + G +QP++L +LDI P    L GV MEL D A PLL+ V  T     A   ++IA++VG  PR++GM+RKD++  NV I+K+  +AL+ +A    KV+VV NPAN             P   F    R   L  N    QI    G+ +N         D KNVIIWGNHSS+QYPDVN   VN
Sbjct:    3 EPIRVLVTGAAGQIAYSLLYSIAKGDVFGKEQPLVLVLLDITPMMTVLEGVVMELQDCALPLLREVIPTDKEEVAFKDLDIAILVGSMPRREGMERKDLLKANVKIFKSQGAALDKYAKKTVKVVVVGNPANTNCLIASKSAPSIPKENFSCLTR---LDHNRAKSQIALKLGVTSN---------DVKNVIIWGNHSSTQYPDVNHAKVN 201          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_CHRVO (Malate dehydrogenase OS=Chromobacterium violaceum GN=mdh PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.299e-37
Identity = 97/213 (45.54%), Postives = 122/213 (57.28%), Query Frame = 3
Query:   63 KEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPAN--------------PMH*F*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVN 659
            K PVRV VTGAA QIGY+L+  IA G MLG DQPVILH+LD+P A  AL GV MEL D AFPLL G+ AT D   A   V +A++VG  PR +GM+RKD++  N +I+     AL  HAA + KVLVV NPAN              P + F   LR   L  N  L QI +         +T  PV+  + + +WGNHS + Y D    T++
Sbjct:    2 KAPVRVAVTGAAGQIGYSLLFRIASGEMLGKDQPVILHLLDLPQAQTALKGVMMELEDCAFPLLAGMVATDDPNVAFKDVKVALLVGARPRSKGMERKDLLEANGAIFTVQGKALNDHAARDVKVLVVGNPANTNAWIAMKSAPDLDPKN-FTAMLR---LDHNRALSQIAA---------KTGKPVASIEKLAVWGNHSPTMYADYRFATID 201          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDHC_XENTR (Malate dehydrogenase, cytoplasmic OS=Xenopus tropicalis GN=mdh1 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.299e-37
Identity = 89/199 (44.72%), Postives = 120/199 (60.30%), Query Frame = 3
Query:   66 EPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANPMH*F*KNLRHQSLLRNYM-LDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVN 659
            EPV+VLVTGAA QI Y+L+  IA+G + G DQP+IL +LDI P    L GV MEL D A PLLK V AT     A   +++A++VG  PR++GM+RKD++  NV I+K+  +AL  ++  + KV+VV NPAN                N+  L ++   +  G    +      D KNVIIWGNHSS+QYPD +  TVN
Sbjct:    3 EPVKVLVTGAAGQIAYSLLYGIAKGDVFGKDQPLILVLLDITPMMTVLEGVVMELQDCALPLLKEVIATDKEDVAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKSQGAALNKYSKKSVKVIVVGNPANTNCLTAMKSAPSIPKENFSCLTRLDHNRAKGQIALKLNVASDDVKNVIIWGNHSSTQYPDASHATVN 201          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDHC_ECHGR (Malate dehydrogenase, cytoplasmic OS=Echinococcus granulosus GN=MDH PE=2 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 3.299e-37
Identity = 87/200 (43.50%), Postives = 120/200 (60.00%), Query Frame = 3
Query:   69 PVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANP----MH*F*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTV 656
            P+RVL+TGAA QI Y L  M+A G + G DQ +ILH+LDIP A   L+GV MEL D AF +L G+  T    EA T +++A+MVG  PRKQGM+R+D++S NV I+K    AL+ +A    KVLVV NPAN     M  +  ++  ++      LD   +   +     +   P +  KNV IWGNHS+ Q+PD++   V
Sbjct:    4 PLRVLITGAAGQIAYNLSNMVANGNLFGKDQQIILHLLDIPEAKTVLDGVVMELQDCAFTVLAGIVPTHCLKEAFTDIDVALMVGAMPRKQGMERRDLLSSNVKIFKEQGEALDKYAKKTVKVLVVGNPANTNCLIMSKYAPSIPKENFTALTRLDHNRAIYQVAA---KAGVPNTCVKNVCIWGNHSNKQFPDLSHAVV 200          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_AZOSB (Malate dehydrogenase OS=Azoarcus sp. (strain BH72) GN=mdh PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.309e-37
Identity = 91/207 (43.96%), Postives = 120/207 (57.97%), Query Frame = 3
Query:   57 MAKEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPANPMH*F*KNLRHQ----------SLLR---NYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPD 638
            M+K PVRV VTGAA QIGY+L+  IA G MLG DQPVIL +LD+P A +A+ GV MEL D AFPLL G+ AT D   A     +A++VG  PR  GM+RKD++++N  I+    +A+  +A P+CKVLVV NP N      K +  +           +LR   N  L Q+    G           VS  KN+++WGNHS + Y D
Sbjct:    1 MSKAPVRVAVTGAAGQIGYSLLFRIASGEMLGKDQPVILQLLDLPQAQKAVKGVMMELEDCAFPLLAGMIATDDPNVAFKDAKVALLVGARPRGPGMERKDLLTENAKIFTVQGAAIGQYADPDCKVLVVGNPCNTNAYIAKEVAQKYGRVPAKNFTGMLRLDHNRALSQLAGKSG---------REVSSLKNLVVWGNHSPTMYAD 198          
BLAST of EY710868 vs. ExPASy Swiss-Prot
Match: MDH_RALEJ (Malate dehydrogenase OS=Ralstonia eutropha (strain JMP134) GN=mdh PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.627e-37
Identity = 95/214 (44.39%), Postives = 120/214 (56.07%), Query Frame = 3
Query:   57 MAKEPVRVLVTGAARQIGYALVPMIARGVMLGTDQPVILHMLDIPPAAEALNGVKMELVDAAFPLLKGVDATTDAVEACTGVNIAVMVGGFPRKQGMDRKDVMSKNVSIYKAHASALEHHAAPNCKVLVVANPAN-------------PMH*F*KNLRHQSLLRNYMLDQIGS*QGIGTNI*ETECPVSDAKNVIIWGNHSSSQYPDVNQCTVN 659
            MAK P+RV VTGAA QIGY+L+  IA G MLG DQPVIL +LD+P A  A+ GV MEL D AFPLL GV  T D   A    ++A++VG  PR +GM+RKD++  N  I+     AL+  A+ N KVLVV NPAN             P   F   LR   L  N  L QI +         +T  PV+  + + +WGNHS + Y D    TV+
Sbjct:    1 MAKAPMRVAVTGAAGQIGYSLLFRIANGDMLGKDQPVILQLLDLPQAQAAVKGVVMELEDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLEANAQIFTVQGKALDEVASRNVKVLVVGNPANTNAYIAMKSAPSLPRENFTAMLR---LDHNRALSQIAA---------KTGKPVASIEKMFVWGNHSPTMYADYRYATVD 202          
The following BLAST results are available for this feature:
BLAST of EY710868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
MDHC_HUMAN1.481e-3745.24Malate dehydrogenase, cytoplasmic OS=Homo sapiens ... [more]
MDHC_RAT1.934e-3745.77Malate dehydrogenase, cytoplasmic OS=Rattus norveg... [more]
MDH_RALSO2.526e-3745.37Malate dehydrogenase OS=Ralstonia solanacearum GN=... [more]
MDHC_MOUSE2.526e-3745.77Malate dehydrogenase, cytoplasmic OS=Mus musculus ... [more]
MDHC_CHICK2.526e-3744.55Malate dehydrogenase, cytoplasmic OS=Gallus gallus... [more]
MDH_CHRVO3.299e-3745.54Malate dehydrogenase OS=Chromobacterium violaceum ... [more]
MDHC_XENTR3.299e-3744.72Malate dehydrogenase, cytoplasmic OS=Xenopus tropi... [more]
MDHC_ECHGR3.299e-3743.50Malate dehydrogenase, cytoplasmic OS=Echinococcus ... [more]
MDH_AZOSB4.309e-3743.96Malate dehydrogenase OS=Azoarcus sp. (strain BH72)... [more]
MDH_RALEJ5.627e-3744.39Malate dehydrogenase OS=Ralstonia eutropha (strain... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-001-B06-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710868 ID=EY710868; Name=EY710868; organism=Citrus sinensis; type=EST; length=862bp
CCACGCGTCCGGGAAAAATCTTTTCGTTTCCTGTGATACATCTCTGATCC
GAACTAATGGCCAAGGAACCAGTTCGCGTTCTCGTCACCGGCGCCGCAAG
GCAAATTGGATATGCACTTGTCCCCATGATTGCTAGGGGAGTGATGTTGG
GTACTGACCAGCCTGTGATTCTGCACATGCTTGATATCCCACCTGCAGCA
GAGGCATTGAATGGTGTGAAGATGGAGTTGGTTGATGCTGCATTCCCTCT
TCTTAAAGGTGTTGATGCTACAACTGATGCTGTTGAGGCATGCACTGGGG
TCAATATTGCCGTTATGGTTGGTGGCTTTCCAAGAAAACAAGGAATGGAT
AGAAAAGATGTGATGTCAAAGAACGTTTCAATCTACAAGGCTCATGCTTC
TGCCCTGGAGCATCACGCAGCTCCGAACTGCAAGGTTCTAGTTGTCGCTA
ACCCTGCAAACCCAATGCATTGATTCTGAAAGAATTTGCGCCATCAATCC
CTGCTAAGAAATTACATGCTTGACCAGATTGGATCATAACAGGGCATTGG
GACAAATATCTGAGAAACTGAATGTCCAGTATCTGATGCTAAGAATGTGA
TTATTTGGGGAAATCATTCATCATCTCAGTACCCTGATGTCAACCAGTGC
ACTGTCAATACTGCCACTGGGGAAAACCTGTCCATGAGCTTGTCAGGATT
ATGCATCGTTGAATGGAGATTCATAACCACAGCCAACAACGTGGTGCTGC
ATCATCAACTCCAAAAGCTCCCAAGGGTCTGCTGCTGCAATTCCGCTTTG
ACCTACCCGGATTGGGTTCTTGAACCCTTAGGACCTGGGCCCCAGGGGGT
TACCTGATGGTC
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