EY710866

Overview
NameEY710866
Unique NameEY710866
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length926
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710866 vs. ExPASy Swiss-Prot
Match: EFTU_MYCMM (Elongation factor Tu OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=tuf PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.489e-14
Identity = 60/220 (27.27%), Postives = 105/220 (47.73%), Query Frame = 2
Query:   89 LLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTT*VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFLDYPPLGRFAVRDMRQTVAVGVIKSVEK 736
            L+DA+D +I +P R +D+P  +P++DV+ I G GTV  GRVE G++       +V   P+   T V  VEM  + L +   GDNVG  ++ +  +D++RG V    K         F  QV I++     G  + P  + +      + +++   +    G E+      +  GD   + +   +P+ ++  L      RFA+R+  +TV  G +  + K
Sbjct:  193 LMDAVDESIPDPVRETDRPFLMPVEDVFTITGRGTVVTGRVERGIINVNEEVEIVGIRPTSTKTTVTGVEMFRKLLDQGQAGDNVGLLLRGIKREDVERGQVV--VKPGTTTPHTEFEGQVYILSK--DEGGRHTPFFNNYRPQFYFRTTDVTGVVTLPEGTEM------VMPGDNTNISVKLIQPVAMDDGL------RFAIREGGRTVGAGRVVKIIK 396          
BLAST of EY710866 vs. ExPASy Swiss-Prot
Match: EFTU_METPP (Elongation factor Tu OS=Methylibium petroleiphilum (strain PM1) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.489e-14
Identity = 59/217 (27.19%), Postives = 105/217 (48.39%), Query Frame = 2
Query:   89 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--T*VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFLDYPPLGRFAVRDMRQTVAVGVIKSV 730
            L +ALD+ I  P+R  D    +P++DV+ I G GTV  GRVE G++K G  +       T  T    VEM  + L +   GDNVG  ++    +D++RG V    K    +   +FT+++ +++   + G  + P  + +      + +++   +      EL K+ + +  GD   + +    P+ +E  L      RFA+R+  +TV  GV+  +
Sbjct:  194 LAEALDSYIPTPERAVDGAFLMPVEDVFSISGRGTVVTGRVERGIIKVGEEIEIVGISATQKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVQRGQVL--CKPGSVKPHTHFTAEIYVLSK--EEGGRHTPFFNNYRPQFYFRTTDVTGAV------ELPKDKEMVMPGDNVSITVKLINPIAMEEGL------RFAIREGGRTVGAGVVAKI 394          
BLAST of EY710866 vs. ExPASy Swiss-Prot
Match: EFTU_LACF3 (Elongation factor Tu OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=tuf PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.489e-14
Identity = 62/218 (28.44%), Postives = 101/218 (46.33%), Query Frame = 2
Query:   89 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTT*VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFLDYPPLGRFAVRDMRQTVAVGVIKSV 730
            LLD +D  I  PKRP+DKP  +P++DV+ I G GTV  GR++ G +K G    +V      + + V  VEM H+ L     GDNVG  ++ V+   ++RG V   ++    +    F  +V +M    + G  + P    +        +++   I+   G E+      +  GD     +   KP+ +E  L      +F +R+   TV  GV+  V
Sbjct:  193 LLDVVDEYIPTPKRPTDKPFMMPVEDVFTITGRGTVASGRIDRGTVKIGDEVEIVGLKEDVIKSTVTGVEMFHKTLDLGEAGDNVGILLRGVSHDQIERGQVL--AEPGSIQTHKQFKGEVYVMTK--EEGGRHTPFFSNYRPQFYFHTTDVTGTIELPDGVEM------VMPGDNVTFTVELQKPVALEKGL------KFTIREGGHTVGAGVVSEV 394          
BLAST of EY710866 vs. ExPASy Swiss-Prot
Match: EFTU_HAMD5 (Elongation factor Tu OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=tuf PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.489e-14
Identity = 65/221 (29.41%), Postives = 108/221 (48.87%), Query Frame = 2
Query:   89 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLK--PGMVVTFGPSGLTT*VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPT--KPMVVETFLDYPPLGRFAVRDMRQTVAVGVIKSVEK 736
            L +ALD  I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K    + +      +TT    +EM  + L E   G+NVG  ++ +  ++++RG V   +K         F ++V I+    + G  + P    +      + +++   I+   G E+      +  GD   +KM+ T   P+ ++  L      RFA+R+  +TV  GV+  V K
Sbjct:  192 LANALDKYIPEPQRDIDKPFLLPIEDVFSISGRGTVVTGRVERGMIKTSDSVEIVGIKDTVTTTCTGIEMFRKLLDEGRAGENVGVLLRGIKREEIERGQVL--AKPGSINPHTKFEAEVYILTK--EEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGD--NIKMLVTLIHPIAMDDGL------RFAIREGGRTVGAGVVAKVIK 394          
BLAST of EY710866 vs. ExPASy Swiss-Prot
Match: EFTU_DICNV (Elongation factor Tu OS=Dichelobacter nodosus (strain VCS1703A) GN=tuf PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.489e-14
Identity = 68/220 (30.91%), Postives = 108/220 (49.09%), Query Frame = 2
Query:   89 LLDALD-NINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTT*VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIP--TKPMVVETFLDYPPLGRFAVRDMRQTVAVGVIKSV 730
            L+DALD +I EPKR  DKP  +P++DV+ I G GTV  GRVE GV+K G    +V    +  TT    VEM  + L +   GDNVG  ++    ++++RG V   +K         F S+V +++   + G  + P    +      + +++  +     G E+      +  GD   VKMI     P+ ++  L      RFA+R+  +TV  GV+  +
Sbjct:  194 LVDALDASIPEPKRDIDKPFLMPIEDVFSISGRGTVVTGRVERGVVKVGDELEIVGLRDTAKTT-CTGVEMFRKLLDQGQAGDNVGVLLRGTKREEVERGQVL--AKPGTITPHTKFESEVYVLSK--EEGGRHTPFFKGYRPQFYFRTTDVTGECVLPEGVEM------VMPGD--NVKMIVQLIHPIAMDEGL------RFAIREGGRTVGAGVVAKI 394          
BLAST of EY710866 vs. ExPASy Swiss-Prot
Match: EFTU_CLOTH (Elongation factor Tu OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=tuf PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.489e-14
Identity = 59/218 (27.06%), Postives = 106/218 (48.62%), Query Frame = 2
Query:   89 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTT*VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFLDYPPLGRFAVRDMRQTVAVGVIKSV 730
            L++ +D  I  P+R  DKP  +P++DV+ I G GTV  GRVE G LK G    +V    S   T V  +EM  + L +A+ GDN+G  ++ +   +++RG V   +K    +    F +QV ++    + G  + P  + +      + +++   ++   G E+      +  GD   +K+    P+ +E  L      +FA+R+  +TV  G +  +
Sbjct:  197 LMEEVDKYIPTPQRDIDKPFAMPVEDVFTITGRGTVATGRVERGTLKMGDEVEIVGLSDSPKKTVVTGIEMFRKLLDQAVAGDNIGALLRGIQRNEVERGQVL--AKPGSIKPHTYFEAQVYVLTK--EEGGRHTPFFNNYRPQFYFRTTDVTGVVELPQGTEM------VMPGDHITMKVKLITPVAMEEGL------KFAIREGGRTVGAGNVSKI 398          
BLAST of EY710866 vs. ExPASy Swiss-Prot
Match: EFTU_AZOPC (Elongation factor Tu OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=tuf PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.489e-14
Identity = 61/218 (27.98%), Postives = 105/218 (48.17%), Query Frame = 2
Query:   89 LLDALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTT*VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFLDYPPLGRFAVRDMRQTVAVGVIKSV 730
            L+DA+DN I  P+R  DK   +P++DV+ I G GTV  GR+ETG+++ G    ++    +G  + V  VEM  + L E   GDNVG  ++ V   ++KRG V ++   +  +      ++V I+    + G  + P  + +     V+  ++  +I    G E+      +  GD   + +    P+     L      RFA+R+  +TV  G I  +
Sbjct:  192 LMDAIDNWIPLPQRDIDKSFLMPVEDVFSITGRGTVATGRIETGLVRTGDEVQIIGLDANGKKSVVTGVEMFRKILDEGQAGDNVGLLLRGVDKDEVKRGMVITH--PNKVKPHTKVKAEVYILKK--EEGGRHTPFHNKYRPQFYVRTLDVTGEITLPEGTEM------VMPGDNVTITIELIYPVACNEGL------RFAIREGGRTVGAGQITEI 393          
BLAST of EY710866 vs. ExPASy Swiss-Prot
Match: EFTU_ALTMD (Elongation factor Tu OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=tuf PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.489e-14
Identity = 64/215 (29.77%), Postives = 103/215 (47.91%), Query Frame = 2
Query:   95 DALDN-INEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTF-GPSGLT-T*VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFLDYPPLGRFAVRDMRQTVAVGVIKSV 730
            +ALD+ I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K G  V   G    T T    VEM  + L E   G+NVG  ++     +++RG V   +K        NF ++V +++     G  + P    +      + +++   ++   G E+      +  GD    K+    P+ +E  L      RFA+R+  +TV  GV+  +
Sbjct:  194 EALDSYIPEPERAIDKPFILPIEDVFSISGRGTVVTGRVEQGIIKVGEEVEIVGIKDTTKTTCTGVEMFRKLLDEGRAGENVGVLLRGTKRDEVERGQVL--AKPGSITPHVNFEAEVYVLSK--DEGGRHTPFFKGYRPQFYFRTTDVTGAVELPEGVEM------VMPGDNLKFKVELIAPIAMEEGL------RFAIREGGRTVGAGVVSKI 392          
BLAST of EY710866 vs. ExPASy Swiss-Prot
Match: EFTU_ACTPJ (Elongation factor Tu OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.489e-14
Identity = 66/235 (28.09%), Postives = 111/235 (47.23%), Query Frame = 2
Query:   38 DNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTF-GPSGLT-T*VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFLDYPPLGRFAVRDMRQTVAVGVIKSVEK 736
            + ++E + +LD Y           I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K G  V   G    T T V  VEM  + L E   G+NVG  ++    ++++RG V   +K        +F S+V +++   + G  + P    +      + +++   I+   G E+      +  GD   + +    P+ ++  L      RFA+R+  +TV  GV+  + K
Sbjct:  187 EKILELAHHLDTY-----------IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKSGEEVEIVGIKETTKTTVTGVEMFRKLLDEGRAGENVGALLRGTKREEIERGQVL--AKPGTITPHTDFESEVYVLSK--EEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGDNIKMTVSLIHPIAMDEGL------RFAIREGGRTVGAGVVAKIIK 394          
BLAST of EY710866 vs. ExPASy Swiss-Prot
Match: EFTU_ACTP2 (Elongation factor Tu OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.489e-14
Identity = 66/235 (28.09%), Postives = 111/235 (47.23%), Query Frame = 2
Query:   38 DNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTF-GPSGLT-T*VKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFLDYPPLGRFAVRDMRQTVAVGVIKSVEK 736
            + ++E + +LD Y           I EP+R  DKP  LP++DV+ I G GTV  GRVE G++K G  V   G    T T V  VEM  + L E   G+NVG  ++    ++++RG V   +K        +F S+V +++   + G  + P    +      + +++   I+   G E+      +  GD   + +    P+ ++  L      RFA+R+  +TV  GV+  + K
Sbjct:  187 EKILELAHHLDTY-----------IPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKSGEEVEIVGIKETTKTTVTGVEMFRKLLDEGRAGENVGALLRGTKREEIERGQVL--AKPGTITPHTDFESEVYVLSK--EEGGRHTPFFKGYRPQFYFRTTDVTGTIELPEGVEM------VMPGDNIKMTVSLIHPIAMDEGL------RFAIREGGRTVGAGVVAKIIK 394          
The following BLAST results are available for this feature:
BLAST of EY710866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_MYCMM7.489e-1427.27Elongation factor Tu OS=Mycobacterium marinum (str... [more]
EFTU_METPP7.489e-1427.19Elongation factor Tu OS=Methylibium petroleiphilum... [more]
EFTU_LACF37.489e-1428.44Elongation factor Tu OS=Lactobacillus fermentum (s... [more]
EFTU_HAMD57.489e-1429.41Elongation factor Tu OS=Hamiltonella defensa subsp... [more]
EFTU_DICNV7.489e-1430.91Elongation factor Tu OS=Dichelobacter nodosus (str... [more]
EFTU_CLOTH7.489e-1427.06Elongation factor Tu OS=Clostridium thermocellum (... [more]
EFTU_AZOPC7.489e-1427.98Elongation factor Tu OS=Azobacteroides pseudotrich... [more]
EFTU_ALTMD7.489e-1429.77Elongation factor Tu OS=Alteromonas macleodii (str... [more]
EFTU_ACTPJ7.489e-1428.09Elongation factor Tu OS=Actinobacillus pleuropneum... [more]
EFTU_ACTP27.489e-1428.09Elongation factor Tu OS=Actinobacillus pleuropneum... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-001-B04-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710866 ID=EY710866; Name=EY710866; organism=Citrus sinensis; type=EST; length=926bp
CCACGCGTCCGCCCACGCGTCCTCCCACGCGTCCGGTGACAACATGATTG
AGAGGTCTACCAACCTTGACTGGTACAAGGGTCCAACCCTGCTGGATGCT
CTTGACAATATCAATGAGCCGAAGAGGCCCTCAGACAAGCCCCTTCGTCT
GCCACTCCAGGACGTGTACAAGATTGGTGGCATTGGAACCGTCCCAGTGG
GTCGCGTTGAGACCGGTGTGCTCAAGCCTGGTATGGTGGTGACATTTGGT
CCCTCTGGATTGACAACTTAGGTTAAGTCTGTTGAGATGCACCACGAAGC
TCTGCAGGAGGCCCTTCCGGGTGACAATGTTGGCTTCAACGTGAAGAACG
TTGCTGTCAAGGATCTCAAGCGTGGTTTTGTTGCTTCCAACTCGAAGGAT
GATCCGGCCAGGGAAGCTGCCAACTTCACTTCACAGGTCATCATCATGAA
CCATCCTGGCCAGATTGGAAATGGATATGCCCCAGTGCTTGACTGCCACA
CCTCCCACATTGCTGTCAAGTTTTCTGAGCTTGTGACCAAGATTGACAGG
CGATCTGGCAAGGAGCTTGAGAAGGAGCCCAAGTTCTTGAAGAATGGAGA
TGCCGGAATGGTTAAGATGATTCCCACCAAGCCCATGGTTGTTGAGACCT
TTCTCGACTACCCACCCCTTGGTCGTTTTGCTGTTAGGGACATGCGTCAG
ACTGTAGCTGTTGGTGTGATCAAGAGTGTTGAAAAGAAGGATCCATCGGG
TGGCAAAGGCACCAAGTCTGCTGCCAAGAAAAGTGAGGAGTTTTTTTGGG
ATCATCTGCTATAGGTAGCCTTTATTTTCCCGGGTTAGGCAATTTTGCCA
GGTTTAGTTGTTTACGGGAAACTCATTTTAATTCTCGAATTGGGTTTAAA
TCATGAGTTTTTTTGGAAGTGGAAAA
back to top