EY710863

Overview
NameEY710863
Unique NameEY710863
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length913
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710863 vs. ExPASy Swiss-Prot
Match: PCF2_ORYSJ (Transcription factor PCF2 OS=Oryza sativa subsp. japonica GN=PCF2 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.297e-18
Identity = 52/96 (54.17%), Postives = 66/96 (68.75%), Query Frame = 3
Query:  120 GAHMSNSDGAANGVSNGAI-----IDPQRQQPPGNGALA-VKKPP--SKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 383
            GA      G A  V+  AI     + P+ +     G +A V+KPP  ++DRH+KV+GRGRRIRMP  CAAR+FQLTRELGHKSDG+TI WLL+Q+E
Sbjct:   28 GAAGGGGGGGAAAVAMSAIPMNSWLVPKPEPVEFFGGMAMVRKPPPRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSE 123          
BLAST of EY710863 vs. ExPASy Swiss-Prot
Match: PCF2_ORYSI (Transcription factor PCF2 OS=Oryza sativa subsp. indica GN=PCF2 PE=4 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.297e-18
Identity = 52/96 (54.17%), Postives = 66/96 (68.75%), Query Frame = 3
Query:  120 GAHMSNSDGAANGVSNGAI-----IDPQRQQPPGNGALA-VKKPP--SKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 383
            GA      G A  V+  AI     + P+ +     G +A V+KPP  ++DRH+KV+GRGRRIRMP  CAAR+FQLTRELGHKSDG+TI WLL+Q+E
Sbjct:   28 GAAGGGGGGGAAAVAMSAIPMNSWLVPKPEPVEFFGGMAMVRKPPPRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSE 123          
BLAST of EY710863 vs. ExPASy Swiss-Prot
Match: TCP9_ARATH (Transcription factor TCP9 OS=Arabidopsis thaliana GN=TCP9 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.694e-18
Identity = 42/62 (67.74%), Postives = 50/62 (80.65%), Query Frame = 3
Query:  198 PPGNGALAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 383
            PP +    +K+  +KDRH+KV+GRGRRIRMP  CAAR+FQLTRELGHKSDG+TI WLL  AE
Sbjct:   62 PPSSTGPPLKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAE 123          
BLAST of EY710863 vs. ExPASy Swiss-Prot
Match: TCP6_ARATH (Transcription factor TCP6 OS=Arabidopsis thaliana GN=TCP6 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.098e-17
Identity = 38/53 (71.70%), Postives = 49/53 (92.45%), Query Frame = 3
Query:  225 KKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 383
            KK P+KDRH KV+GRGRR+R+P +CAAR++QLT+ELGHKSDG+T+EWLL+ AE
Sbjct:   64 KKKPNKDRHLKVEGRGRRVRLPPLCAARIYQLTKELGHKSDGETLEWLLQHAE 116          
BLAST of EY710863 vs. ExPASy Swiss-Prot
Match: PCF1_ORYSJ (Transcription factor PCF1 OS=Oryza sativa subsp. japonica GN=PCF1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.872e-17
Identity = 49/90 (54.44%), Postives = 59/90 (65.56%), Query Frame = 3
Query:  114 LPGAHMSNSDGAANGVSNGAIIDPQRQQPPGNGALAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 383
            +  A   +SDGA           P+R +P        K P S DRHSKV GRGRR+R+P + AARVFQLTRELGH++DG+TIEWLLRQAE
Sbjct:   32 IAAAEPPSSDGAT----------PRRVRPR-------KSPSSSDRHSKVAGRGRRVRIPAMVAARVFQLTRELGHRTDGETIEWLLRQAE 104          
BLAST of EY710863 vs. ExPASy Swiss-Prot
Match: TCP11_ARATH (Transcription factor TCP11 OS=Arabidopsis thaliana GN=TCP11 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.904e-15
Identity = 40/84 (47.62%), Postives = 56/84 (66.67%), Query Frame = 3
Query:  132 SNSDGAANGVSNGAIIDPQRQQPPGNGALAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAE 383
            SN +  A+   +       +    G G ++ +   +KDRH+KV+GR RR+ MP + AAR+FQLTRELGHK++G+TIEWLL QAE
Sbjct:   11 SNFNAIASESRSQTQFGVSKSSSSGGGCISAR---TKDRHTKVNGRSRRVTMPALAAARIFQLTRELGHKTEGETIEWLLSQAE 91          
The following BLAST results are available for this feature:
BLAST of EY710863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PCF2_ORYSJ1.297e-1854.17Transcription factor PCF2 OS=Oryza sativa subsp. j... [more]
PCF2_ORYSI1.297e-1854.17Transcription factor PCF2 OS=Oryza sativa subsp. i... [more]
TCP9_ARATH1.694e-1867.74Transcription factor TCP9 OS=Arabidopsis thaliana ... [more]
TCP6_ARATH1.098e-1771.70Transcription factor TCP6 OS=Arabidopsis thaliana ... [more]
PCF1_ORYSJ1.872e-1754.44Transcription factor PCF1 OS=Oryza sativa subsp. j... [more]
TCP11_ARATH3.904e-1547.62Transcription factor TCP11 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-001-B01-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710863 ID=EY710863; Name=EY710863; organism=Citrus sinensis; type=EST; length=913bp
TCCTCAAACACGCTTCCGCCCACGCGTCTTACATAAATAATTCTTACACT
CTCTCTCTCTAACACTCTTTTAACTACTTCAACATTCCCTACCGCTTTTA
TCTTCACCAAATTCTACCTGGTGCTCATATGTCTAATTCGGACGGTGCCG
CTAACGGCGTCTCCAACGGCGCTATTATTGACCCCCAGAGACAGCAGCCT
CCCGGTAATGGCGCGTTGGCCGTCAAGAAGCCGCCCTCCAAGGACCGCCA
CAGCAAGGTCGACGGCCGCGGCAGGAGAATCCGCATGCCGATCATTTGCG
CAGCGCGTGTTTTCCAGTTGACTCGCGAGCTCGGCCACAAATCCGACGGC
CAGACCATCGAGTGGCTTCTCCGCCAAGCCGAGCCCTCAATCATTGCTGC
CACGGGGACGGGTACCACTCCGGCTAGCTTCTCCACTGTCTCGGTGTCGG
TTCGCGGCGGAGGGAACTCGACTTCCTTGTCGTCGACGGTGTCTTCTTCG
GCTATCTCCGCTGCGTTGGAACATAAGCCCTCGCTTGGTCCCGCCCCGTT
CATTCTTGGAAAACGCGTGAGGTCCGACGATGATGGGACCAAAGGGGAAG
ATTCCATTTCTGCCGGGGGGCCTGCCAACGGGGGGCCGATAATGGGCCCT
GCAACTCCAGGCGGCGGGTCCTGGGCTTTGCCGGGCAGGCCGGATTTTTG
GCAGGCCTGGAGTTTTCCTGCACCTGCCGCCCCGGATATGTGGGGTGCAG
GGGCTTTTCACAAAAGCATCATCTTCATATCCACAGCCACCCAGTTTGTT
TTGCAGCAACTATGGGAAAGGCTCCGCGGCTAAAGGGGGAATTATTTCCG
GGCATCTACATTGCTGGGATCTTTCCGGGGGGCCGCGAATCTCGGTCGAA
AGAGAAAACCCCT
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