EY710855

Overview
NameEY710855
Unique NameEY710855
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length928
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710855 vs. ExPASy Swiss-Prot
Match: DCNL2_MOUSE (DCN1-like protein 2 OS=Mus musculus GN=Dcun1d2 PE=2 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 4.131e-12
Identity = 35/117 (29.91%), Postives = 65/117 (55.56%), Query Frame = 2
Query:  329 EMERIDNLFYSYAN-KSSGMIDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYAFAFRYCLTEEKTKSVDIE 676
            + ++++ L+  Y + +    I  +GI+  C D+ +    + +L++AWK +A  Q  F+ +E+  G+  L  D+  +LK  LP LE+E+K P  F+D Y F F +     + K +D+E
Sbjct:   61 DQKKLEQLYSRYKDPQDENKIGIDGIQQFCDDLSLDPASISVLVIAWKFRAATQCEFSKKEFVDGMTELGCDSTERLKALLPRLEQELKDPAKFKDLYQFTFTFAKNPGQ-KGLDLE 176          
BLAST of EY710855 vs. ExPASy Swiss-Prot
Match: DCN1_CAEEL (Defective in cullin neddylation protein 1 OS=Caenorhabditis elegans GN=dcn-1 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 5.395e-12
Identity = 39/122 (31.97%), Postives = 66/122 (54.10%), Query Frame = 2
Query:  329 EMERIDNLFYSYANKSSGM----IDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVKR-PTNFQDFYAFAFRYCLTEEKTKSVDIES 679
            +   I+ LF  Y +    +    + P GI  L +D+    TD R+L+LAWK  A+ Q  F+L+EW +G+ AL+ADTV  L++ +  +   ++     F + Y FAF Y       +++D+E+
Sbjct:   61 DRSNIERLFNQYVDPKDKVGEKRMGPHGINRLLTDLGYEATDRRVLVLAWKFTAQTQCEFSLDEWVKGMTALQADTVQNLRQRIDSINSGLESDKAKFHELYLFAFNYA-KSAACRNLDLET 181          
BLAST of EY710855 vs. ExPASy Swiss-Prot
Match: DCN1L_DROME (DCN1-like protein OS=Drosophila melanogaster GN=CG7427 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.202e-11
Identity = 39/117 (33.33%), Postives = 65/117 (55.56%), Query Frame = 2
Query:  329 EMERIDNLFYSYANKSSGM-IDPEGIESLCSDIEVSHTDVRILMLAWKMKAEKQGYFTLEEWRRGLKALRADTVNKLKKALPDLEKEVKRPTNFQDFYAFAFRYCLTEEKTKSVDIE 676
            + +RI+ LF  Y + S  + I  +G+     D+++      +L++AWK  AE Q  F+ +E+  G+  L  D+++KLK  LP LE+E+     F+DFY F F Y   +   K +D+E
Sbjct:   57 DRKRIEQLFMRYRDPSDPLKIGSQGVIHFLEDLDLKPDSKLVLIIAWKFHAEVQCEFSRDEFINGMCDLGIDSIDKLKTKLPILEQELNDAGKFKDFYHFTFNYA-KDPGQKGIDLE 172          
The following BLAST results are available for this feature:
BLAST of EY710855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
DCNL2_MOUSE4.131e-1229.91DCN1-like protein 2 OS=Mus musculus GN=Dcun1d2 PE=... [more]
DCN1_CAEEL5.395e-1231.97Defective in cullin neddylation protein 1 OS=Caeno... [more]
DCN1L_DROME1.202e-1133.33DCN1-like protein OS=Drosophila melanogaster GN=CG... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-001-A04-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710855 ID=EY710855; Name=EY710855; organism=Citrus sinensis; type=EST; length=928bp
TTCCCAAAACACGCGTCCGATTAAATTAATTAAAATAAAATAAATCTCTC
TCTAGAAATTGGCGCTCCGTCAGCCAGAGACAACCATTCAGCCAGCCAGC
CAGCCAGCCAGCAAGCAAAAAATCAAAAAAGCAAAAGCAACAGAGAGCGT
GATCATCATCGTCGTCGTCGAATCATATTATAAGCTTTTAAATTAAAAGA
GCGACGAAGCTTCTTCGTTCGCTCTCCCATCCGACATGCGTCGTTCTGTA
TCGAGAAAAACGGGTCAAACTAATTCAACCGACGCCACGGATCTCTTTCG
CTCCGCCTCAAGTAAAGCATCTTCGAAAGAGATGGAACGAATCGATAACC
TGTTTTATTCGTATGCGAATAAGTCTTCTGGCATGATTGACCCAGAAGGA
ATTGAAAGTCTGTGTTCAGATATCGAAGTCAGTCATACTGATGTTCGGAT
CTTGATGCTTGCTTGGAAAATGAAAGCGGAAAAGCAAGGGTATTTTACTC
TGGAGGAATGGCGGAGAGGCCTAAAAGCATTGAGGGCTGACACTGTAAAT
AAATTAAAGAAGGCCCTTCCTGATCTGGAGAAAGAGGTGAAGAGGCCAAC
AAACTTTCAAGATTTCTATGCTTTTGCATTCCGGTATTGCTTAACAGAGG
AGAAAACAAAGAGTGTAGACATAGAGAGTGTCTGCGAAATACTGGGGTCT
GTATTATGATNCCAATACCGTGCCAGGNTGACTATTTGATTGAGTATCTA
AAGATTCAATCTGATTATAAGGAAATAACATGGATCAGTGGATGGGGTTT
TACCGGGTCTGCAATGAGATAGCTTCCCGGGCTTCAATAATACGATCCAA
ATCTGCTTGGCCCTGGGCCTGGACAATTTGTAGAGTGATAAAGCGAACCA
ACTTAACTCTGGGTCTTTAACCGACTGA
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