EY710686

Overview
NameEY710686
Unique NameEY710686
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710686 vs. ExPASy Swiss-Prot
Match: MDHM_YEAST (Malate dehydrogenase, mitochondrial OS=Saccharomyces cerevisiae GN=MDH1 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 2.074e-22
Identity = 64/142 (45.07%), Postives = 88/142 (61.97%), Query Frame = 2
Query:    5 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGPGSATLSMAYAAAQVLPMLVSQGFEGGKPVVNLSVTTWLLRGTETSLFFATQGT 430
            K  G Y+PK+L GVT LD +RA  F++EV   DP +  V V+GGH+G+TI+PL+SQ      ++  +   L  RIQ GG EVV+AK G GSATLSMA+A A+    ++S GF+G + V+  S     L  +E   FFA+  T
Sbjct:  151 KNKGVYNPKKLFGVTTLDSIRAARFISEVENTDPTQERVNVIGGHSGITIIPLISQTNHKL-MSDDKRHELIHRIQFGGDEVVKAKNGAGSATLSMAHAGAKFANAVLS-GFKGERDVIEPSFVDSPLFKSEGIEFFASPVT 290          
BLAST of EY710686 vs. ExPASy Swiss-Prot
Match: MDHM_SCHPO (Malate dehydrogenase, mitochondrial OS=Schizosaccharomyces pombe GN=MDH1 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.138e-20
Identity = 56/103 (54.37%), Postives = 70/103 (67.96%), Query Frame = 2
Query:    5 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGPGSATLSMAYAAAQV 313
            ++VG + PK L GVT LD VRA+ F ++V       + +PVVGGH+G TI+PLLSQ      LT  + D L  RIQ GG EVV+AKAG GSATLSMAYA A++
Sbjct:  161 ERVGVHQPKHLFGVTTLDSVRASRFTSQVTNGKAELLHIPVVGGHSGATIVPLLSQ--GGVELTGEKRDALIHRIQFGGDEVVKAKAGAGSATLSMAYAGARM 261          
BLAST of EY710686 vs. ExPASy Swiss-Prot
Match: MDHC_YEAST (Malate dehydrogenase, cytoplasmic OS=Saccharomyces cerevisiae GN=MDH2 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.804e-19
Identity = 54/107 (50.47%), Postives = 71/107 (66.36%), Query Frame = 2
Query:   29 KRLLGVTMLDVVRANTFVAEV---LGLDPRE---VDVPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGPGSATLSMAYAAAQVLPMLVS 331
            +R++GVT LD+VRA+TF+ E+    GL PR     DVPV+GGH+G TI+PL SQ      L   ++ YL  R+Q GG EVV+AK G GSATLSMA+A  + +   VS
Sbjct:  173 RRIMGVTKLDIVRASTFLREINIESGLTPRVNSMPDVPVIGGHSGETIIPLFSQSNFLSRLNEDQLKYLIHRVQYGGDEVVKAKNGKGSATLSMAHAGYKCVVQFVS 279          
BLAST of EY710686 vs. ExPASy Swiss-Prot
Match: MDHP_YEAST (Malate dehydrogenase, peroxisomal OS=Saccharomyces cerevisiae GN=MDH3 PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 1.219e-14
Identity = 49/128 (38.28%), Postives = 73/128 (57.03%), Query Frame = 2
Query:    5 KKVGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVD-----------VPVVGGHAGVTILPLLSQVKPSCSLTPTEIDYLTDRIQNGGTEVVEAKAGPGSATLSMAYAAAQVLPMLVSQGFEGGKP 355
            KK+G + P  ++GVT LD+VRA TF+ + L L   ++            V V+GGH+G TI+P+++  K        + ++   R+Q GG E+V+AK G GSATLSMA+A A+     V + F   KP
Sbjct:  132 KKMGKFKPGNVMGVTNLDLVRAETFLVDYLMLKNPKIGQEQDKTTMHRKVTVIGGHSGETIIPIITD-KSLVFQLDKQYEHFIHRVQFGGDEIVKAKQGAGSATLSMAFAGAKFAEE-VLRSFHNEKP 257          
The following BLAST results are available for this feature:
BLAST of EY710686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 154
Match NameE-valueIdentityDescription
MDHM_YEAST2.074e-2245.07Malate dehydrogenase, mitochondrial OS=Saccharomyc... [more]
MDHM_SCHPO1.138e-2054.37Malate dehydrogenase, mitochondrial OS=Schizosacch... [more]
MDHC_YEAST2.804e-1950.47Malate dehydrogenase, cytoplasmic OS=Saccharomyces... [more]
MDHP_YEAST1.219e-1438.28Malate dehydrogenase, peroxisomal OS=Saccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-086-A10-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710686 ID=EY710686; Name=EY710686; organism=Citrus sinensis; type=EST; length=806bp
TTTCAAGAAAGTTGGCACTTATGATCCAAAGCGACTTTTGGGAGTCACAA
TGCTTGATGTTGTTCGAGCCAATACTTTTGTGGCTGAGGTCTTGGGTCTT
GACCCCAGGGAAGTTGATGTTCCAGTTGTGGGAGGTCATGCTGGGGTTAC
TATTTTACCTCTTTTATCTCAGGTTAAACCATCATGCTCTCTCACCCCTA
CAGAAATTGACTACTTGACAGATCGTATCCAGAATGGTGGTACAGAAGTA
GTTGAGGCAAAAGCTGGACCTGGTTCGGCCACTCTATCCATGGCATATGC
TGCTGCCCAAGTTTTGCCAATGCTTGTCTCCCAAGGTTTTGAAGGGGGGA
AGCCAGTGGTTAATTTGAGTGTGACTACCTGGCTTCTACGGGGAACTGAA
ACTTCCCTTTTCTTTGCCACCCAAGGGACGGGCTTGGACGTGGCTGGGAA
TTGGAGGAAATTAACCCACATTGGCCCATTTGAATAGAATAAGAAAAGGG
CTGGTTTTGGAAAAAGGCAAATAAAAAAGTTTGCCGGGAATCATTTATAT
AAAAGGAGTCCCTTTTTTTCTACGAGAATTCGTGTAACCTCATTCCCAAT
GGGGGCCAAAAAGAAAAAGGGGTGGGGCTTTTTTGTGTGGTCGGCGTCCA
AACTTAACCCAAGAGAATTAGTTTTCCCCCCACACAAAACAAAAAAGCGG
AACAGTTTTCCTTTCTTTTTTCCCCTAATTTCCCATAAAGGAGTATATTA
TATGTTGAGAAACTCAAAAAGCCTAAACAAGAAACCGTATATCATAATTT
TCTCTC
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