EY710670

Overview
NameEY710670
Unique NameEY710670
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1043
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710670 vs. ExPASy Swiss-Prot
Match: RBS2_SPIOL (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.085e-35
Identity = 90/188 (47.87%), Postives = 117/188 (62.23%), Query Frame = 1
Query:    1 ASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGMGV---P*APQVTRILRWTLLDNVESWPMYGCTDATPGFEGGWGRVQKENPLSFVRNYRN*KQRRPGCRGSVSLLPKPPRG 555
            ASS++SSA VAT +R   AQASMVAPFTGLKS+  FPATKK N+DITS+ASNGGRVQCMKVWP   +K++ETLSYLPPL+ + L ++++YL+ + W+PCLEFE + G        +P       WT+       PM+GCTD            +KE P +F+R       R+  C   VS +   P G
Sbjct:    2 ASSVLSSAAVATVSRTP-AQASMVAPFTGLKSTVGFPATKK-NDDITSLASNGGRVQCMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMW----KLPMFGCTDPAQVL-NELEECKKEYPNAFIRIIGFDSNRQVQC---VSFIAYKPAG 179          
BLAST of EY710670 vs. ExPASy Swiss-Prot
Match: RBS5_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 5.386e-35
Identity = 79/142 (55.63%), Postives = 100/142 (70.42%), Query Frame = 1
Query:    1 ASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGM--GVP*APQVTRILRWTLLDNVESWPMYGCTDAT 420
            ASSM++S   A   RA  AQ+SMVAPF GL+SS AFPAT+K NND++++ SNGGRV CM+VWPP GLKKFETLSYLPPLS E L KE++YL+R+ W+PC+EF  E  +      +P       WT+       PM+GCTDA+
Sbjct:    2 ASSMMAST--AAVARAGPAQSSMVAPFNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMW----KLPMFGCTDAS 137          
BLAST of EY710670 vs. ExPASy Swiss-Prot
Match: RBS6_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 4.560e-34
Identity = 77/142 (54.23%), Postives = 98/142 (69.01%), Query Frame = 1
Query:    1 ASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGM--GVP*APQVTRILRWTLLDNVESWPMYGCTDAT 420
            ASSM++S   A   R   AQ +MVAPF GL+SS AFPAT+K NND++++ SNGGRV CM+VWPP GLKKFETLSYLPPLS E L KE++YL+R+ W+PC+EF  E  +      +P       WT+       PM+GCTDA+
Sbjct:    2 ASSMMAST--AAVARVGPAQTNMVAPFNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMW----KLPMFGCTDAS 137          
BLAST of EY710670 vs. ExPASy Swiss-Prot
Match: RBS7_FLAPR (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Flaveria pringlei GN=RBCS7 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.956e-33
Identity = 77/151 (50.99%), Postives = 103/151 (68.21%), Query Frame = 1
Query:   37 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGMGV---P*APQVTRILRWTLLDNVESWPMYGCTDATPGFEGGWGRVQKENPLSFVR 480
            A  A++AQA+MVAPFTGLKS++AFP TKK N D +++ASNGGRVQCMKVWPP G K++ETLSYLP L++  L KE++YL+R+ W+PCLEFELE G        +P       WT+       PM+GCTD+    +      +KE P +++R
Sbjct:    6 ATVATVAQANMVAPFTGLKSNAAFPVTKKVN-DFSTLASNGGRVQCMKVWPPLGKKRYETLSYLPNLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMW----KLPMFGCTDSAQVMK-ELQECKKEYPQAWIR 150          
BLAST of EY710670 vs. ExPASy Swiss-Prot
Match: RBS2_LEMGI (Ribulose bisphosphate carboxylase small chain SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 5.041e-33
Identity = 75/142 (52.82%), Postives = 99/142 (69.72%), Query Frame = 1
Query:    1 ASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGM--GVP*APQVTRILRWTLLDNVESWPMYGCTDAT 420
            ASSM++S   A   RA  AQ++MVAPF GL+SS AFPAT+K N +++++ SNGG+V CM+VWPP GLKKFETLSYLPPLS E L KE++YL+R+ W+PC+EF  E  +      +P       WT+       PM+GCTDA+
Sbjct:    2 ASSMMAST--AAVARAGPAQSNMVAPFNGLRSSVAFPATRKANKNLSTLPSNGGKVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMW----KLPMFGCTDAS 137          
BLAST of EY710670 vs. ExPASy Swiss-Prot
Match: RBS3_FLAPR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Flaveria pringlei GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.584e-33
Identity = 76/151 (50.33%), Postives = 102/151 (67.55%), Query Frame = 1
Query:   37 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGMGV---P*APQVTRILRWTLLDNVESWPMYGCTDATPGFEGGWGRVQKENPLSFVR 480
            A  A++AQA+MVAPFTGLKS++AFP TKK N D +++ SNGGRVQCMKVWPP G K++ETLSYLP L++  L KE++YL+R+ W+PCLEFELE G        +P       WT+       PM+GCTD+    +      +KE P +++R
Sbjct:    6 ATVATVAQANMVAPFTGLKSNAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTESQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMW----KLPMFGCTDSAQVMK-ELQECKKEYPQAWIR 150          
BLAST of EY710670 vs. ExPASy Swiss-Prot
Match: RBS1_FLAPR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Flaveria pringlei GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 8.599e-33
Identity = 76/151 (50.33%), Postives = 102/151 (67.55%), Query Frame = 1
Query:   37 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGMGV---P*APQVTRILRWTLLDNVESWPMYGCTDATPGFEGGWGRVQKENPLSFVR 480
            A  A++AQA+MVAPFTGLK+++AFP TKK N D +++ SNGGRVQCMKVWPP G KK+ETLSYLP L++  L KE++YL+R+ W+PCLEFELE G        +P       WT+       PM+GCTD+    +      +KE P +++R
Sbjct:    6 ATVATVAQANMVAPFTGLKANAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKKYETLSYLPDLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMW----KLPMFGCTDSAQVMK-ELQECKKEYPQAWIR 150          
BLAST of EY710670 vs. ExPASy Swiss-Prot
Match: RBS5_FLAPR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Flaveria pringlei GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.123e-32
Identity = 76/151 (50.33%), Postives = 102/151 (67.55%), Query Frame = 1
Query:   37 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGMGV---P*APQVTRILRWTLLDNVESWPMYGCTDATPGFEGGWGRVQKENPLSFVR 480
            A  A++AQA+MVAPFTGLKS++AFP TKK N D +++ SNGGRVQCMKVWPP G K++ETLSYLP L++  L KE++YL+R+ W+PCLEFELE G        +P       WT+       PM+GCTD+    +      +KE P +++R
Sbjct:    6 ATVATVAQANMVAPFTGLKSNAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMW----KLPMFGCTDSAQVMK-ELQECKKEYPQAWIR 150          
BLAST of EY710670 vs. ExPASy Swiss-Prot
Match: RBS6_FLAPR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Flaveria pringlei GN=RBCS6 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 4.268e-32
Identity = 75/151 (49.67%), Postives = 101/151 (66.89%), Query Frame = 1
Query:   37 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGMGV---P*APQVTRILRWTLLDNVESWPMYGCTDATPGFEGGWGRVQKENPLSFVR 480
            A  A++AQA+MVAPFTGLK+++AFP TKK N D +++ SNGGRVQCMKVWPP G KK+ TLSYLP L++  L KE++YL+R+ W+PCLEFELE G        +P       WT+       PM+GCTD+    +      +KE P +++R
Sbjct:    6 ATVAAVAQANMVAPFTGLKANAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKKYXTLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMW----KLPMFGCTDSVQVMK-ELQECKKEYPQAWIR 150          
BLAST of EY710670 vs. ExPASy Swiss-Prot
Match: RBS4_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.242e-31
Identity = 75/142 (52.82%), Postives = 96/142 (67.61%), Query Frame = 1
Query:    1 ASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGM--GVP*APQVTRILRWTLLDNVESWPMYGCTDAT 420
            ASSM++S   A A RA  AQ +MV PF   +SS  FPAT+K NND++++ SNGGRV CM+VWPP GLKKFETLSYLPPLS E L KE++YL+R+ W+PC+EF  E  +      +P       WT+       PM+GCTDA+
Sbjct:    2 ASSMMASTAAAVA-RAGPAQTNMV-PFNACRSSVPFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMW----KLPMFGCTDAS 137          
The following BLAST results are available for this feature:
BLAST of EY710670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RBS2_SPIOL1.085e-3547.87Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS5_LEMGI5.386e-3555.63Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS6_LEMGI4.560e-3454.23Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS7_FLAPR2.956e-3350.99Ribulose bisphosphate carboxylase small chain 7, c... [more]
RBS2_LEMGI5.041e-3352.82Ribulose bisphosphate carboxylase small chain SSU2... [more]
RBS3_FLAPR6.584e-3350.33Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS1_FLAPR8.599e-3350.33Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS5_FLAPR1.123e-3250.33Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS6_FLAPR4.268e-3249.67Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS4_LEMGI1.242e-3152.82Ribulose bisphosphate carboxylase small chain SSU4... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-083-H02-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710670 ID=EY710670; Name=EY710670; organism=Citrus sinensis; type=EST; length=1043bp
GCTTCCTCAATGATCTCATCGGCCACCGTTGCCACCGCGAACCGCGCCAG
CCTTGCTCAGGCCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTT
CTGCTTTCCCAGCAACCAAGAAGACCAACAATGACATTACTTCCATTGCA
AGCAACGGCGGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGGCTT
GAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCTT
TGCTCAAGGAAATCAATTACCTTATCCGCTCCGGCTGGATTCCCTGCTTG
GAATTCGAGTTGGAGAAAGGGATGGGTGTACCGTGAGCACCACAAGTCAC
CAGGATACTACGATGGACGCTACTGGACAATGTGGAAAGCTGGCCCATGT
ATGGGTGCACAGATGCAACCCCAGGTTTTGAAGGAGGTTGGGGGAGGGTC
CAAAAGGAAAACCCACTTTCATTCGTCCGAAATTATCGGAATTGAAAACA
AAGACGTCCAGGTTGCAGGGGATCAGTTTCATTGCTGCCAAAGCCCCCAA
GGGGTCCTAGGTTCCCAATATAAAATTTTGGGTACCACCCCCTGGCAAAA
TTGGTTGAATAATATTATTGGTAAACCCCCAAAAGGTTTATTTCAATCAA
GGGGGGGTTTAGGGTTGGCTTTAAAATTTGAACCAAGGGCGGACGGTTGC
TCCCGGGCCCAATTTTTTTGGTTTTCCCCCCCCAGAAGCCAAAAAAGAAC
ACATAAAAAGATAAAGAAAAACCAGGAAACAAATCACACAAAAAAAAGAA
AAGGGGGGCGCCCCACGAAAGGAATACTCAAGCTTATAAGACGAGAGAGA
GGGGCAAAGACGAAAGCAAGTATTGGTAAAGAAGAATAAAAAGTAATGAA
AGTTAAGAGGGGGCGGGAAATATTAATAAAAAAAGAAAAGAGAGAGAGAA
AAAAAAAACAAACAGAGAGGTATACAAAAAAACGATAAAGTGATGTCGCG
TTACGGAAAAAAAAAGAGCCATACAACACCCCCTGTCAATATT
back to top