EY710670

Overview
NameEY710670
Unique NameEY710670
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1043
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY710670 vs. ExPASy Swiss-Prot
Match: RBS_BATOE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Batophora oerstedii GN=RBCS PE=2 SV=2)

HSP 1 Score: 63.5438 bits (153), Expect = 1.378e-14
Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:  151 SNG--GRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEF 306
            SNG   + + M VW P   K FET SYLPPL+D+ + K+++Y++R+ W PCLEF
Sbjct:   26 SNGTISKSRAMMVWEPFNNKFFETFSYLPPLTDDQITKQVDYILRNNWTPCLEF 79

HSP 2 Score: 37.7354 bits (86), Expect = 1.378e-14
Identity = 21/59 (35.59%), Postives = 28/59 (47.46%), Query Frame = 2 
Query:  356 YYDGRYWTMWKAGPCMGAQMQPQVLKEVGGGSKRKTHFHSSEIIGIENKDVQVAGDQFH 532
            Y D RYWTMWK  P  G     QVL E+   +K     +   +    N+ VQ++G   H
Sbjct:  102 YQDNRYWTMWKL-PMFGCIDGSQVLTEISACTKAFPDAYIRLVCFDANRQVQISGFLVH 159
[Close]
BLAST of EY710670 vs. ExPASy Swiss-Prot
Match: RBS3_ACECL (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia cliftonii GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.084e-11
Identity = 43/117 (36.75%), Postives = 56/117 (47.86%), Query Frame = 1 
Query:  106 FPATKKTNNDITSIASNGGRVQC--MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEK----------GMGVP*APQVTRILRWTLLDNVESWPMYGCTDAT 420
            FP   K N      ASN    +C  M VW P   K FET SYLPPL+DE + K+++Y++ + W PCLEF               MG P +        WT+       PM+GCTD +
Sbjct:   22 FPRATKNNK---GFASNAAVQKCRDMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMG-PVSSTYQDNRYWTMW----KLPMFGCTDGS 130
The following BLAST results are available for this feature:
BLAST of EY710670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RBS_BATOE1.378e-1450.00Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_ACECL7.084e-1136.75Ribulose bisphosphate carboxylase small chain 3, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-083-H02-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710670 ID=EY710670; Name=EY710670; organism=Citrus sinensis; type=EST; length=1043bp
GCTTCCTCAATGATCTCATCGGCCACCGTTGCCACCGCGAACCGCGCCAG
CCTTGCTCAGGCCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTT
CTGCTTTCCCAGCAACCAAGAAGACCAACAATGACATTACTTCCATTGCA
AGCAACGGCGGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGGCTT
GAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCTT
TGCTCAAGGAAATCAATTACCTTATCCGCTCCGGCTGGATTCCCTGCTTG
GAATTCGAGTTGGAGAAAGGGATGGGTGTACCGTGAGCACCACAAGTCAC
CAGGATACTACGATGGACGCTACTGGACAATGTGGAAAGCTGGCCCATGT
ATGGGTGCACAGATGCAACCCCAGGTTTTGAAGGAGGTTGGGGGAGGGTC
CAAAAGGAAAACCCACTTTCATTCGTCCGAAATTATCGGAATTGAAAACA
AAGACGTCCAGGTTGCAGGGGATCAGTTTCATTGCTGCCAAAGCCCCCAA
GGGGTCCTAGGTTCCCAATATAAAATTTTGGGTACCACCCCCTGGCAAAA
TTGGTTGAATAATATTATTGGTAAACCCCCAAAAGGTTTATTTCAATCAA
GGGGGGGTTTAGGGTTGGCTTTAAAATTTGAACCAAGGGCGGACGGTTGC
TCCCGGGCCCAATTTTTTTGGTTTTCCCCCCCCAGAAGCCAAAAAAGAAC
ACATAAAAAGATAAAGAAAAACCAGGAAACAAATCACACAAAAAAAAGAA
AAGGGGGGCGCCCCACGAAAGGAATACTCAAGCTTATAAGACGAGAGAGA
GGGGCAAAGACGAAAGCAAGTATTGGTAAAGAAGAATAAAAAGTAATGAA
AGTTAAGAGGGGGCGGGAAATATTAATAAAAAAAGAAAAGAGAGAGAGAA
AAAAAAAACAAACAGAGAGGTATACAAAAAAACGATAAAGTGATGTCGCG
TTACGGAAAAAAAAAGAGCCATACAACACCCCCTGTCAATATT
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