EY710668

Overview
NameEY710668
Unique NameEY710668
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1061
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710668 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.961e-33
Identity = 70/108 (64.81%), Postives = 80/108 (74.07%), Query Frame = 3
Query:   96 FVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 419
            F+G+  N  P  + ++ G   S R T S  +     WYGPDRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE FAKNR LEVIH RWAMLGALGC+FPE+L +
Sbjct:   19 FLGQTKNANPLRDVVAMG---SARFTMSNDL-----WYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEK 118          
BLAST of EY710668 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.757e-33
Identity = 75/130 (57.69%), Postives = 88/130 (67.69%), Query Frame = 3
Query:  102 GKAVNLAPSGN-ELSNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGIKFG*GPCGSRAGSPNLQRG 485
            G+A + +P  +   +  GRI+M             WYGPDRVKYLGPFS + PSYL GEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGCVFPE+L +  G++F   P   +AGS     G
Sbjct:   24 GRAASASPLRDIAAATNGRITM---------GNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFK-EPVWFKAGSQIFSEG 143          
BLAST of EY710668 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.505e-32
Identity = 63/67 (94.03%), Postives = 65/67 (97.01%), Query Frame = 3
Query:  237 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGIKFG 437
            PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH  WAMLGALGCVFPELL+RNG+KFG
Sbjct:    1 PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSTWAMLGALGCVFPELLSRNGVKFG 67          
BLAST of EY710668 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 9.757e-32
Identity = 68/105 (64.76%), Postives = 79/105 (75.24%), Query Frame = 3
Query:  174 ASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGIKFG*GPCGSRAGSPNLQRG 485
            A+ + S+G  WYGPDR K+LGPFS   P+YLTGEFPGDYGWDTAGLSADPETF K RELEVIH RWA+LGALG + PELL+   G+KFG  P   +AG+     G
Sbjct:   29 AAPAKSAGIEWYGPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFG-EPVWFKAGAQIFSEG 132          
BLAST of EY710668 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.664e-31
Identity = 66/95 (69.47%), Postives = 78/95 (82.11%), Query Frame = 3
Query:  165 RKTASKSV---SSGSPWYGPDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGIKFG 437
            +KTA+K+    SSG  +YGP+R K+LGP+S    P+YLTGEFPGDYGWDTAGLSADPETF + RELE+IH RWAMLGALGC  PELLA++G KFG
Sbjct:   20 KKTAAKAAAPKSSGVEFYGPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFG 114          
BLAST of EY710668 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.193e-29
Identity = 72/113 (63.72%), Postives = 78/113 (69.03%), Query Frame = 3
Query:   99 VGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGIKFG 437
            + K   L P  + L      +M K A+KS  S S      RVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSA PETFAKNRELEVIH R AM  ALGC+FPELL+  G  FG
Sbjct:   20 IAKPSKLNPISSTLIVTAGFTMLKHAAKSKVSSSTC--DRRVKYLGPFSGEWPSYLTGEFPGDYGWDTAGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFG 130          
BLAST of EY710668 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 3.248e-27
Identity = 59/90 (65.56%), Postives = 74/90 (82.22%), Query Frame = 3
Query:  204 WYGPDRVKYLGPFS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGIKFG*GPCGSRAGS 467
            +YGPDR K+LGPFS  + P YLTGEFPGDYGWDTAGLSADP+TFA+ RE+E+IH RWA+LGALG + PELL++  G++FG  P   +AG+
Sbjct:   33 FYGPDRAKFLGPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFG-EPVWFKAGA 121          
BLAST of EY710668 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 8.279e-23
Identity = 71/153 (46.41%), Postives = 84/153 (54.90%), Query Frame = 3
Query:  168 KTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA-RNGIKFG*GPCGSRAGSPNLQRGAGLKLTWGKTQALNPS---PEEFLANL-------GLGQGESLKGNP 593
            K  SKS SS + +YGPD          + P   TGEFPGDYGWDTAGLSADPETF + RELE+IH R  +LGALG V PELLA  +GIKFG      +AG+   Q G       G     NPS    +  +A L       GL +G  + G P
Sbjct:   45 KAVSKSSSSANQFYGPDATSGWD-LQHQHPRLPTGEFPGDYGWDTAGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDG-------GLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGP 189          
BLAST of EY710668 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.672e-15
Identity = 52/117 (44.44%), Postives = 61/117 (52.14%), Query Frame = 3
Query:  117 LAPSGNELSNGGRISMRKTA---SKSVSSGSP----WYGPDRVKYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGIKFG 437
            LA S +        S +K A   SK+VS  S     WYGPDR  +L        E P YL GE  GDYG+D  GL   PE FAK +  E+IH RWAMLGA G + PE L + G   G
Sbjct:   26 LASSPSTFKTVALFSKKKPAPAKSKAVSETSDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCG 142          
BLAST of EY710668 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.198e-13
Identity = 37/73 (50.68%), Postives = 49/73 (67.12%), Query Frame = 3
Query:  213 PDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGI 428
            PDR  +   F G  PP +L G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + GI
Sbjct:   63 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI 132          
The following BLAST results are available for this feature:
BLAST of EY710668 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CB23_SOLLC3.961e-3364.81Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB23_HORVU6.757e-3357.69Chlorophyll a-b binding protein of LHCII type III,... [more]
CB22_CUCSA1.505e-3294.03Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB2_CHLMO9.757e-3264.76Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLRE1.664e-3169.47Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO1.193e-2963.72Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB2_DUNTE3.248e-2765.56Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNSA8.279e-2346.41Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB26_ARATH1.672e-1544.44Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB12_SOLLC1.198e-1350.68Chlorophyll a-b binding protein 7, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-083-G11-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710668 ID=EY710668; Name=EY710668; organism=Citrus sinensis; type=EST; length=1061bp
CTTCTCTTGCTTACACAGCTTCTCTTGCTTACCCAGCTTCTGCTTCTCAA
TTAAATTCCTCAATGGCAACCTCAACAATGGCTCTCTCCTCATCATTCGT
CGGCAAGGCCGTGAACCTCGCCCCTTCAGGCAATGAGCTAAGCAATGGTG
GCCGCATCTCCATGCGTAAAACCGCGAGCAAGTCTGTTTCTTCAGGTAGC
CCGTGGTACGGCCCAGACAGAGTCAAGTACTTGGGCCCATTCTCTGGCGA
GCCCCCAAGCTACTTGACCGGTGAGTTCCCTGGCGACTACGGTTGGGACA
CAGCCGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTC
GAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTT
CCCGGAGCTCTTGGCCCGCAACGGAATCAAGTTCGGGTGAGGCCCGTGTG
GTTCAAGGGCGGGAAGCCCAAATCTTCAGCGAGGGGCGGGGCTAAAACTA
ACTTGGGGAAAAACCCAAGCTTTGAATCCCAGCCCAGAAGAATTCTTGGC
CAATCTGGGGCTTGGCCAAGGTGAGTCTTTGAAGGGGAACCCCTTAAAGG
GGTTACAGAAATAGCTGGGAGGCCCCGATCGGAAGAAGAGAAAGAAACCC
ATTGCACCCAAAGACGGAAGATTATAATACCATTTGAGGATAGAAAGAAG
GACAACCGAAGGAATATTAGACGAGCACAAAACCATACGAGAGAAAACCA
AAAAGAGGGACGAGAGCGAGACGGAATAACACTGATCAGCGATATAAGAG
AGAATACAGAGACGTAGGAAAGAAAGAGAGAGTGAAGATGAGCGAAAGGA
ACCGGAGGACAACACAGCACAGGACAAAGGAGAGGGACAAGAGCGAAAGA
CAAAAAACATGCAAACAAAAAGAATACAAGGCAAAAAAAAAATAAAGAGC
AAAAAGATGACAAAAAAATACAAAATACAAGAGAGAGAATATAACAAACA
AAAAGGAGAGCGGAAAGAGGAGAGGAAAGCACGATGCAAAAAAAGAAAAC
GAAAAAAGAAA
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