EY710658 | Citrus Genome Database

Overview


Name	EY710658
Unique Name	EY710658
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	1006

Libraries


Library Name	Type
Sweet orange fruit, development stadium (2 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of EY710658 vs. ExPASy Swiss-Prot
Match: H33_RABIT (Histone H3.3 OS=Oryctolagus cuniculus GN=H3F3A PE=2 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 8.148e-50
Identity = 85/87 (97.70%), Postives = 87/87 (100.00%), Query Frame = 2

Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS 310
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS 87

HSP 2 Score: 49.6766 bits (117), Expect = 8.148e-50
Identity = 26/37 (70.27%), Postives = 28/37 (75.68%), Query Frame = 3

Query:  351 LVGLFEDTNLCAIHAKRGHYYGPRTYSFARKIRGERA 461
            LVGLFEDTNLCAIHAKR     P+    AR+IRGERA
Sbjct:  101 LVGLFEDTNLCAIHAKRVTIM-PKDIQLARRIRGERA 136

BLAST of EY710658 vs. ExPASy Swiss-Prot
Match: H33_PIG (Histone H3.3 OS=Sus scrofa GN=H3F3A PE=2 SV=3)

HSP 1 Score: 169.859 bits (429), Expect = 8.148e-50
Identity = 85/87 (97.70%), Postives = 87/87 (100.00%), Query Frame = 2

Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS 310
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS 87

HSP 2 Score: 49.6766 bits (117), Expect = 8.148e-50
Identity = 26/37 (70.27%), Postives = 28/37 (75.68%), Query Frame = 3

Query:  351 LVGLFEDTNLCAIHAKRGHYYGPRTYSFARKIRGERA 461
            LVGLFEDTNLCAIHAKR     P+    AR+IRGERA
Sbjct:  101 LVGLFEDTNLCAIHAKRVTIM-PKDIQLARRIRGERA 136

BLAST of EY710658 vs. ExPASy Swiss-Prot
Match: H33_MOUSE (Histone H3.3 OS=Mus musculus GN=H3f3a PE=1 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 8.148e-50
Identity = 85/87 (97.70%), Postives = 87/87 (100.00%), Query Frame = 2

Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS 310
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS 87

HSP 2 Score: 49.6766 bits (117), Expect = 8.148e-50
Identity = 26/37 (70.27%), Postives = 28/37 (75.68%), Query Frame = 3

Query:  351 LVGLFEDTNLCAIHAKRGHYYGPRTYSFARKIRGERA 461
            LVGLFEDTNLCAIHAKR     P+    AR+IRGERA
Sbjct:  101 LVGLFEDTNLCAIHAKRVTIM-PKDIQLARRIRGERA 136

BLAST of EY710658 vs. ExPASy Swiss-Prot
Match: H33_HUMAN (Histone H3.3 OS=Homo sapiens GN=H3F3A PE=1 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 8.148e-50
Identity = 85/87 (97.70%), Postives = 87/87 (100.00%), Query Frame = 2

Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS 310
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS 87

HSP 2 Score: 49.6766 bits (117), Expect = 8.148e-50
Identity = 26/37 (70.27%), Postives = 28/37 (75.68%), Query Frame = 3

Query:  351 LVGLFEDTNLCAIHAKRGHYYGPRTYSFARKIRGERA 461
            LVGLFEDTNLCAIHAKR     P+    AR+IRGERA
Sbjct:  101 LVGLFEDTNLCAIHAKRVTIM-PKDIQLARRIRGERA 136

BLAST of EY710658 vs. ExPASy Swiss-Prot
Match: H33_DROME (Histone H3.3 OS=Drosophila melanogaster GN=His3.3A PE=1 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 8.148e-50
Identity = 85/87 (97.70%), Postives = 87/87 (100.00%), Query Frame = 2

Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS 310
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS 87

HSP 2 Score: 49.6766 bits (117), Expect = 8.148e-50
Identity = 26/37 (70.27%), Postives = 28/37 (75.68%), Query Frame = 3

Query:  351 LVGLFEDTNLCAIHAKRGHYYGPRTYSFARKIRGERA 461
            LVGLFEDTNLCAIHAKR     P+    AR+IRGERA
Sbjct:  101 LVGLFEDTNLCAIHAKRVTIM-PKDIQLARRIRGERA 136

BLAST of EY710658 vs. ExPASy Swiss-Prot
Match: H33_DROHY (Histone H3.3 OS=Drosophila hydei GN=His3.3A PE=3 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 8.148e-50
Identity = 85/87 (97.70%), Postives = 87/87 (100.00%), Query Frame = 2

Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS 310
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS 87

HSP 2 Score: 49.6766 bits (117), Expect = 8.148e-50
Identity = 26/37 (70.27%), Postives = 28/37 (75.68%), Query Frame = 3

Query:  351 LVGLFEDTNLCAIHAKRGHYYGPRTYSFARKIRGERA 461
            LVGLFEDTNLCAIHAKR     P+    AR+IRGERA
Sbjct:  101 LVGLFEDTNLCAIHAKRVTIM-PKDIQLARRIRGERA 136

BLAST of EY710658 vs. ExPASy Swiss-Prot
Match: H33_DANRE (Histone H3.3 OS=Danio rerio GN=h3f3a PE=2 SV=3)

HSP 1 Score: 169.859 bits (429), Expect = 8.148e-50
Identity = 85/87 (97.70%), Postives = 87/87 (100.00%), Query Frame = 2

Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS 310
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS 87

HSP 2 Score: 49.6766 bits (117), Expect = 8.148e-50
Identity = 26/37 (70.27%), Postives = 28/37 (75.68%), Query Frame = 3

Query:  351 LVGLFEDTNLCAIHAKRGHYYGPRTYSFARKIRGERA 461
            LVGLFEDTNLCAIHAKR     P+    AR+IRGERA
Sbjct:  101 LVGLFEDTNLCAIHAKRVTIM-PKDIQLARRIRGERA 136

BLAST of EY710658 vs. ExPASy Swiss-Prot
Match: H33_CHICK (Histone H3.3 OS=Gallus gallus GN=H3-IX PE=2 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 8.148e-50
Identity = 85/87 (97.70%), Postives = 87/87 (100.00%), Query Frame = 2

Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS 310
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS 87

HSP 2 Score: 49.6766 bits (117), Expect = 8.148e-50
Identity = 26/37 (70.27%), Postives = 28/37 (75.68%), Query Frame = 3

Query:  351 LVGLFEDTNLCAIHAKRGHYYGPRTYSFARKIRGERA 461
            LVGLFEDTNLCAIHAKR     P+    AR+IRGERA
Sbjct:  101 LVGLFEDTNLCAIHAKRVTIM-PKDIQLARRIRGERA 136

BLAST of EY710658 vs. ExPASy Swiss-Prot
Match: H33_BOVIN (Histone H3.3 OS=Bos taurus GN=H3F3A PE=1 SV=3)

HSP 1 Score: 169.859 bits (429), Expect = 8.148e-50
Identity = 85/87 (97.70%), Postives = 87/87 (100.00%), Query Frame = 2

Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS 310
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS 87

HSP 2 Score: 49.6766 bits (117), Expect = 8.148e-50
Identity = 26/37 (70.27%), Postives = 28/37 (75.68%), Query Frame = 3

Query:  351 LVGLFEDTNLCAIHAKRGHYYGPRTYSFARKIRGERA 461
            LVGLFEDTNLCAIHAKR     P+    AR+IRGERA
Sbjct:  101 LVGLFEDTNLCAIHAKRVTIM-PKDIQLARRIRGERA 136

BLAST of EY710658 vs. ExPASy Swiss-Prot
Match: H3_URECA (Histone H3 OS=Urechis caupo PE=1 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.062e-49
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 2

Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS 310
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS 87

HSP 2 Score: 49.6766 bits (117), Expect = 1.062e-49
Identity = 26/37 (70.27%), Postives = 28/37 (75.68%), Query Frame = 3

Query:  351 LVGLFEDTNLCAIHAKRGHYYGPRTYSFARKIRGERA 461
            LVGLFEDTNLCAIHAKR     P+    AR+IRGERA
Sbjct:  101 LVGLFEDTNLCAIHAKRVTIM-PKDIQLARRIRGERA 136

The following BLAST results are available for this feature:

BLAST of EY710658 vs. ExPASy Swiss-Prot

BLAST of EY710658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197


Match Name	E-value	Identity	Description
H33_RABIT	8.148e-50	97.70	Histone H3.3 OS=Oryctolagus cuniculus GN=H3F3A PE=...	[more]
H33_PIG	8.148e-50	97.70	Histone H3.3 OS=Sus scrofa GN=H3F3A PE=2 SV=3	[more]
H33_MOUSE	8.148e-50	97.70	Histone H3.3 OS=Mus musculus GN=H3f3a PE=1 SV=2	[more]
H33_HUMAN	8.148e-50	97.70	Histone H3.3 OS=Homo sapiens GN=H3F3A PE=1 SV=2	[more]
H33_DROME	8.148e-50	97.70	Histone H3.3 OS=Drosophila melanogaster GN=His3.3A...	[more]
H33_DROHY	8.148e-50	97.70	Histone H3.3 OS=Drosophila hydei GN=His3.3A PE=3 S...	[more]
H33_DANRE	8.148e-50	97.70	Histone H3.3 OS=Danio rerio GN=h3f3a PE=2 SV=3	[more]
H33_CHICK	8.148e-50	97.70	Histone H3.3 OS=Gallus gallus GN=H3-IX PE=2 SV=2	[more]
H33_BOVIN	8.148e-50	97.70	Histone H3.3 OS=Bos taurus GN=H3F3A PE=1 SV=3	[more]
H3_URECA	1.062e-49	97.70	Histone H3 OS=Urechis caupo PE=1 SV=2	[more]

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Properties


Property Name	Value
Genbank description	CS00-C3-701-083-G01-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY710658 ID=EY710658; Name=EY710658; organism=Citrus sinensis; type=EST; length=1006bp
CGAATTTTTAGAGAGAGAAATTGAGTAGAGGAGTTGAAGAAACTCAGAGA
TGGCCCGTACCAAGCAAACTGCACGTAAGTCAACCGGAGGAAAGGCTCCT
AGGAAGCAACTTGCTACCAAGGCCGCCCGTAAGTCTGCGCCCACCACCGG
TGGTGTTAAGAAGCCTCATCGTTACCGTCCTGGAACCGTCGCCCTTCGAG
AAATTCGCAAGTACCAGAAGAGTACCGAGCTGCTTATCAGGAAACTCCCA
TTCCAGAGACTTGTTCGTGAAATTGCTCAGGACTTTAAGACTGATCTGCG
TTTCCAGAGCCATGCAGTGCTGGCCCTGCAGGAGGCAGCGGAGGCTTAAC
CTTGTTGGTCTCTTCGAGGACACTAACCTCTGCGCCATTCATGCAAAGCG
TGGTCACTATTATGGCCCAAGGACATACAGCTTTGCCCGTAAGATCCGTG
GCGAGCGTGCTTAAACCGTAATTGCTGGGTTGGCTTTCAATTTGAATGGA
TGGAAAGGGAAAGGGGGGCATTTGGAATGGGTTAAATTTGTACGTGGGGG
GTTGGGGGGGGGGGTAAAAAAGGGGTAAGGAATTCCCATAAGTTATTAAA
AAAATGGCTTTTGCTCTCTTCTGGGGTTTGTTTTTTGGGGGGGGTTTTTA
AAAGGCCAATTTGGTAGGGAAAGGGGAATTTTTATTACCCCATAAAAAAC
AAGGAATTATAGAGGTATCTATAGAAAAAATGAAGAAGACAGAAAAAAAG
GGGGGAGAAAAACAACTTCATGAAATTTTAGCCCCACAAACACGACATAT
GTTTGTTACTAAAGAGAAAAAAAGACAAAAAAAAATAGAAATAGAGACAC
GGTAGTACAGTCACAATAGAGAGACCAACGATAATACCGGCGGCCTGGGG
AGGCGAGAAGAATAAATACTTGCTGTAAACATTAAGTCAAAGCAATAAGT
GAAACATACAAGAATAAATCAGGAGCACGGCAGAGAAAATCCACAGATAG
TGAATG