EY710517

Overview
NameEY710517
Unique NameEY710517
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1003
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY710517 vs. ExPASy Swiss-Prot
Match: YOCE_SCHPO (Uncharacterized RNA-binding protein C4F6.14 OS=Schizosaccharomyces pombe GN=SPBC4F6.14 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.952e-11
Identity = 53/175 (30.29%), Postives = 77/175 (44.00%), Query Frame = 1 
Query:   13 FSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREP-FSQFGEILSVKIPV---GKGCG--FVQFANRKDAEVALQKLQGTAIGKQTVRLSW 519
            F S    +K A V+ +  TG  +GYGFV F    +  RA  E+       R +R+D ATP+K S                   N A  +  + D   N   + +  L   +      EP FS+FG++  +KIP    G+ CG  FV   +RK AE A+  L GT I  + + + W
Sbjct:   24 FFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFATPRKRSEV-------------DTDQNKAVKKTIRQD---NRPRLIIRNLPWSIKKPQHLEPHFSKFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDW 182
The following BLAST results are available for this feature:
BLAST of EY710517 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
YOCE_SCHPO3.952e-1130.29Uncharacterized RNA-binding protein C4F6.14 OS=Sch... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-024-B03-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710517 ID=EY710517; Name=EY710517; organism=Citrus sinensis; type=EST; length=1003bp
CCACGCGTCCGCTTTTCTAGTAAGTATCCATCTGTAAAAGGAGCCAAAGT
TATCATCGACTCGAATACTGGCCGTACAAAAGGTTACGGTTTTGTTAGAT
TTGGTGATGAAAATGAGAGGTCAAGGGCCATGACCGAAATGAATGGTGTG
TATTGTTCAAGTAGGCCGATGCGCATAGATGTTGCAACCCCCAAAAAGGC
TTCTGGATATCAACAACAGTATTCTTCACAAGCTCTTGTATTGGCTGGTG
GACCTGGGTCAAATGGTGCTAGGGTCCAAGGTTCTCAATCTGATGGCGAG
TCCAATAATGCGACTATATTTGTTGGGGCACTTGATTCTGATGTCAGTGA
TGAGGATCTCAGAGAGCCTTTTTCTCAGTTTGGTGAGATTCTTTCTGTTA
AAATACCTGTTGGTAAAGGATGTGGGTTTGTGCAATTTGCAAACAGAAAG
GATGCTGAGGTTGCATTGCAGAAGTTACAAGGGACCGCTATAGGCAAGCA
AACAGTCCGTCTTTCTTGGGGTCGCAATCCTGGGAACAAACAGTGGAGAG
GAGATCACAGTAACCACTGGAAATGGGGCACACTATGGAAGTCAGGGCTT
TAGTGGCAAATGGATATGCTTTTTCCGCCAAATCAAGATCCAAACTTGTA
TGCTGCAACAGCGGTTCCCGGGGGCTCTTTAAAAATATTGGGGGCAGTTC
GACCCCCGGGTAACTCGGAACTTGCTAAACTGGGGTAAAAATTACCCCAA
GGAAATCTTAGGAAACAAAAAAAAAGAGTGGAATTTTGGCGGCCGGAAAC
ATTGGTACCTAAAATCTTGGAATTTTTGGAAAAAATTTTTTGAACTCGGG
AGAAAAAAATTTTAAAAAACCTTTGGGGGAAAAGGGTGGGGAGGGGGGGT
TTGATTTTTTTTTTTTTTTTTTTTCTTTTTTCTTGGGGGGGGAAACTTCT
GGGTTTGTTGGAAAAAAGGGGGAATTTTGTTTTTTTTGTGTTTTTTGTGG
GTT
back to top