EY710499
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY710499 vs. ExPASy Swiss-Prot
Match: RBS6_FLAPR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Flaveria pringlei GN=RBCS6 PE=2 SV=1) HSP 1 Score: 178.333 bits (451), Expect = 8.062e-58 Identity = 80/117 (68.38%), Postives = 100/117 (85.47%), Query Frame = 1 Query: 49 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWK 399 A A++AQA+MVAPFTGLK+++AFP TKK N D +++ SNGGRVQCMKVWPP G KK+ TLSYLP L++ L KE++YL+R+ W+PCLEFELE G+VYRE+ +SPGYYDGRYWTMWK Sbjct: 6 ATVAAVAQANMVAPFTGLKANAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKKYXTLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWK 121 HSP 2 Score: 66.6254 bits (161), Expect = 8.062e-58 Identity = 29/48 (60.42%), Postives = 39/48 (81.25%), Query Frame = 3 Query: 405 PCMGAQNATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAQP 548 P G ++ QV+KE+ E +KEYP +++RIIGFDN RQVQCISFIA++P Sbjct: 123 PMFGCTDSVQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 170 HSP 3 Score: 22.3274 bits (46), Expect = 8.062e-58 Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 2 Query: 398 KLPMYGCTE 424 KLPM+GCT+ Sbjct: 121 KLPMFGCTD 129
BLAST of EY710499 vs. ExPASy Swiss-Prot
Match: RBS_FLATR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Flaveria trinervia GN=RBCS PE=2 SV=1) HSP 1 Score: 174.866 bits (442), Expect = 3.012e-57 Identity = 78/117 (66.67%), Postives = 97/117 (82.91%), Query Frame = 1 Query: 49 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWK 399 A A++ Q +MVAPFTGLK+++AFP TKK N +++ SNGGRVQCMKVWPP G KK+ETLSYLP L++ L KE++YL+R+ W+PCLEFELE G+VYRE+ SPGYYDGRYWTMWK Sbjct: 6 ATVAAVPQTNMVAPFTGLKANAAFPVTKKVNG-FSTLPSNGGRVQCMKVWPPVGKKKYETLSYLPELTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENASSPGYYDGRYWTMWK 121 HSP 2 Score: 68.1662 bits (165), Expect = 3.012e-57 Identity = 29/50 (58.00%), Postives = 40/50 (80.00%), Query Frame = 3 Query: 405 PCMGAQNATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAQPPG 554 P G ++ QV+KE+ E +KEYP +++RIIGFDN RQVQC+SFIA++P G Sbjct: 123 PMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCVSFIASKPTG 172 HSP 3 Score: 22.3274 bits (46), Expect = 3.012e-57 Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 2 Query: 398 KLPMYGCTE 424 KLPM+GCT+ Sbjct: 121 KLPMFGCTD 129
BLAST of EY710499 vs. ExPASy Swiss-Prot
Match: RBS1_LEMGI (Ribulose bisphosphate carboxylase small chain SSU1, chloroplastic OS=Lemna gibba GN=SSU1 PE=2 SV=2) HSP 1 Score: 174.481 bits (441), Expect = 3.921e-57 Identity = 81/126 (64.29%), Postives = 101/126 (80.16%), Query Frame = 1 Query: 22 MISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWK 399 M+S+A VA R AQ +MV F G +SS AFPAT+K NND++++ S+GGRV CM+VWPP GLKKFETLSYLPPLS E L KE++YL+R+ W+PC+EF E G+VYRE++ SPGYYDGRYWTMWK Sbjct: 2 MVSTAAVA---RVRPAQTNMVGAFNGCRSSVAFPATRKANNDLSTLPSSGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENNASPGYYDGRYWTMWK 123 HSP 2 Score: 67.781 bits (164), Expect = 3.921e-57 Identity = 32/48 (66.67%), Postives = 37/48 (77.08%), Query Frame = 3 Query: 405 PCMGAQNATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAQP 548 P G +A+QV+ EV E +K YP FVRIIGFDNKRQVQCISFIA +P Sbjct: 125 PMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 172 HSP 3 Score: 22.7126 bits (47), Expect = 3.921e-57 Identity = 7/11 (63.64%), Postives = 10/11 (90.91%), Query Frame = 2 Query: 398 KLPMYGCTECN 430 KLPM+GCT+ + Sbjct: 123 KLPMFGCTDAS 133
BLAST of EY710499 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 9.933e-55 Identity = 70/111 (63.06%), Postives = 92/111 (82.88%), Query Frame = 1 Query: 67 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWK 399 + A+ VAPF GLKS++ P ++++N S+ SNGGR++CM+VWP G+KKFETLSYLPPLS EALLK+++YLIRS W+PCLEF + G+++REH+ SPGYYDGRYWTMWK Sbjct: 8 SSATSVAPFQGLKSTAGLPVSRRSNASSASV-SNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWK 116 HSP 2 Score: 76.2554 bits (186), Expect = 9.933e-55 Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = 3 Query: 405 PCMGAQNATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAQPPG 554 P G +ATQVL EV EV+KEYP ++VRIIGFDN RQVQC+SFIA +PPG Sbjct: 118 PMFGCTDATQVLNEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 167 HSP 3 Score: 22.3274 bits (46), Expect = 9.933e-55 Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 2 Query: 398 KLPMYGCTE 424 KLPM+GCT+ Sbjct: 116 KLPMFGCTD 124
BLAST of EY710499 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 3.706e-54 Identity = 70/111 (63.06%), Postives = 90/111 (81.08%), Query Frame = 1 Query: 67 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWK 399 + A+ VAPF GLKS++ P + ++ + S SNGGR++CM+VWP G+KKFETLSYLPPLS EALLK+++YLIRS W+PCLEF + G+V+REH+ SPGYYDGRYWTMWK Sbjct: 8 SSATTVAPFQGLKSTAGLPISCRSGSTGLSSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWTMWK 117 HSP 2 Score: 75.8702 bits (185), Expect = 3.706e-54 Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 3 Query: 405 PCMGAQNATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAQPPG 554 P G +ATQVL EV EV+KEYP ++VR+IGFDN RQVQC+SFIA +PPG Sbjct: 119 PMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNMRQVQCVSFIAFRPPG 168 HSP 3 Score: 22.3274 bits (46), Expect = 3.706e-54 Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 2 Query: 398 KLPMYGCTE 424 KLPM+GCT+ Sbjct: 117 KLPMFGCTD 125
BLAST of EY710499 vs. ExPASy Swiss-Prot
Match: RBS_ZANAE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2 SV=1) HSP 1 Score: 168.318 bits (425), Expect = 6.273e-54 Identity = 83/130 (63.85%), Postives = 102/130 (78.46%), Query Frame = 1 Query: 10 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWK 399 MASSM+ S A +R S AQ++MV PF GL SS+AFP T+K D + + SNG RV+CM+VWPP G KKFETLSYLPPL+ E L +E++YLIR+GWIPC+EF + G+VYRE+H SPGYYDGRYWTMWK Sbjct: 1 MASSMMVST--AAVSRTSPAQSNMVVPFAGLHSSAAFPVTRKFA-DSSKLPSNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVDYLIRNGWIPCIEF-CKVGFVYREYHNSPGYYDGRYWTMWK 126 HSP 2 Score: 63.5438 bits (153), Expect = 6.273e-54 Identity = 30/50 (60.00%), Postives = 35/50 (70.00%), Query Frame = 3 Query: 405 PCMGAQNATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAQPPG 554 P G +++QVLKEV E K YP F RIIGFDN RQVQCISF+ +P G Sbjct: 128 PMFGCTDSSQVLKEVDECSKAYPDYFNRIIGFDNTRQVQCISFLTYKPEG 177 HSP 3 Score: 22.3274 bits (46), Expect = 6.273e-54 Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 2 Query: 398 KLPMYGCTE 424 KLPM+GCT+ Sbjct: 126 KLPMFGCTD 134
BLAST of EY710499 vs. ExPASy Swiss-Prot
Match: RBS1_WHEAT (Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic OS=Triticum aestivum PE=3 SV=2) HSP 1 Score: 155.992 bits (393), Expect = 8.175e-54 Identity = 69/111 (62.16%), Postives = 91/111 (81.98%), Query Frame = 1 Query: 67 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWK 399 + A+ VAPF GLKS++ P ++++ + S+ SNGGR++CM+VWP G+KKFETLSYLPPLS EAL K+++YLIRS W+PCLEF + G+V+REH+ SPGYYDGRYWTMWK Sbjct: 8 SSATTVAPFQGLKSTAGLPVSRRSRGSLGSV-SNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALSKQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWTMWK 116 HSP 2 Score: 75.485 bits (184), Expect = 8.175e-54 Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 3 Query: 405 PCMGAQNATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAQPPG 554 P G +ATQVL EV EV+KEYP ++VR+IGFDN RQVQC+SFIA +PPG Sbjct: 118 PMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRPPG 167 HSP 3 Score: 22.3274 bits (46), Expect = 8.175e-54 Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 2 Query: 398 KLPMYGCTE 424 KLPM+GCT+ Sbjct: 116 KLPMFGCTD 124
BLAST of EY710499 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSJ (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS PE=1 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 1.481e-52 Identity = 69/111 (62.16%), Postives = 88/111 (79.28%), Query Frame = 1 Query: 67 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWK 399 + A+ VAPF GLKS++ P +++ N SNGGR++CM+VWP G+KKFETLSYLPPL+ E LLK+I YL+RS W+PCLEF + G+VYRE+H+SPGYYDGRYWTMWK Sbjct: 8 SSATTVAPFQGLKSTAGMPVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWK 117 HSP 2 Score: 70.4774 bits (171), Expect = 1.481e-52 Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 3 Query: 405 PCMGAQNATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAQPPG 554 P G +ATQVLKE+ E +K YP +FVRIIGFDN RQVQ ISFIA +PPG Sbjct: 119 PMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168 HSP 3 Score: 22.3274 bits (46), Expect = 1.481e-52 Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 2 Query: 398 KLPMYGCTE 424 KLPM+GCT+ Sbjct: 117 KLPMFGCTD 125
BLAST of EY710499 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. indica GN=RBCS PE=2 SV=2) HSP 1 Score: 156.762 bits (395), Expect = 1.481e-52 Identity = 69/111 (62.16%), Postives = 88/111 (79.28%), Query Frame = 1 Query: 67 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWK 399 + A+ VAPF GLKS++ P +++ N SNGGR++CM+VWP G+KKFETLSYLPPL+ E LLK+I YL+RS W+PCLEF + G+VYRE+H+SPGYYDGRYWTMWK Sbjct: 8 SSATTVAPFQGLKSTAGMPVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWK 117 HSP 2 Score: 70.4774 bits (171), Expect = 1.481e-52 Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 3 Query: 405 PCMGAQNATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAQPPG 554 P G +ATQVLKE+ E +K YP +FVRIIGFDN RQVQ ISFIA +PPG Sbjct: 119 PMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168 HSP 3 Score: 22.3274 bits (46), Expect = 1.481e-52 Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 2 Query: 398 KLPMYGCTE 424 KLPM+GCT+ Sbjct: 117 KLPMFGCTD 125
BLAST of EY710499 vs. ExPASy Swiss-Prot
Match: RBS2_ORYSJ (Ribulose bisphosphate carboxylase small chain A, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS-A PE=2 SV=2) HSP 1 Score: 156.377 bits (394), Expect = 1.927e-52 Identity = 69/111 (62.16%), Postives = 89/111 (80.18%), Query Frame = 1 Query: 67 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWK 399 + A+ VAPF GLKS++ P ++++ N SNGGR++CM+VWP G+KKFETLSYLPPL+ E LLK+I YL+RS W+PCLEF + G+VYRE+H+SPGYYDGRYWTMWK Sbjct: 8 SSATSVAPFQGLKSTAGLPVSRRSTNSGFGNVSNGGRIKCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWK 117 HSP 2 Score: 70.4774 bits (171), Expect = 1.927e-52 Identity = 34/50 (68.00%), Postives = 39/50 (78.00%), Query Frame = 3 Query: 405 PCMGAQNATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAQPPG 554 P G +ATQVLKE+ E +K YP +FVRIIGFDN RQVQ ISFIA +PPG Sbjct: 119 PMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168 HSP 3 Score: 22.3274 bits (46), Expect = 1.927e-52 Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 2 Query: 398 KLPMYGCTE 424 KLPM+GCT+ Sbjct: 117 KLPMFGCTD 125 The following BLAST results are available for this feature:
BLAST of EY710499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 111
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Sequences
The
following sequences are available for this feature:
EST sequence >EY710499 ID=EY710499; Name=EY710499; organism=Citrus sinensis; type=EST; length=969bpback to top |