EY685218

Overview
NameEY685218
Unique NameEY685218
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length938
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685218 vs. ExPASy Swiss-Prot
Match: HECD1_HUMAN (E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens GN=HECTD1 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.703e-13
Identity = 52/170 (30.59%), Postives = 87/170 (51.18%), Query Frame = 3
Query:  120 TDYELIPGGRNIKVTEENKHQDVDLVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISG--LPDIDLDDMRANTEYS-GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPGIS 620
            T  +L P G +  +T +N  + VDL+ +  + T I+ Q+ AF +GF ++ P E +S F+ +E+++++ G   P    +D+   TE   GY+  SP    F  V+ G S +++   LQF TG S +P  G + L      +   + K   +    PS +TC + L LP  S
Sbjct: 2426 TAVDLKPSGEDEMITMDNAEEYVDLMFDFCMHTGIQKQMEAFRDGFNKVFPMEKLSSFSHEEVQMILCGNQSPSWAAEDIINYTEPKLGYTRDSPGFLRFVRVLCGMSSDERKAFLQFTTGCSTLPPGGLANLH----PRLTVVRKVDATDASYPSVNTCVHYLKLPEYS 2591          
BLAST of EY685218 vs. ExPASy Swiss-Prot
Match: TRIPC_HUMAN (Probable E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.472e-13
Identity = 51/168 (30.36%), Postives = 79/168 (47.02%), Query Frame = 3
Query:  129 ELIPGGRNIKVTEENKHQDVDLVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYS----GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPGIS 620
            EL  GG++I VT  N  + + LV    L   +  Q ++F +GF  + P   +  F  +EL+ L+ G    D  D +   E      GY+  S  +++ +E++  F  E +   LQFVTG+ ++P+ GF +L       +          D LPS  TC N L LP  S
Sbjct: 1803 ELKKGGKDIPVTIHNLEEYLRLVIFWALNEGVSRQFDSFRDGFESVFPLSHLQYFYPEELDQLLCG-SKADTWDAKTLMECCRPDHGYTHDSRAVKFLFEILSSFDNEQQRLFLQFVTGSPRLPVGGFRSLNPPLTIVRKTFESTENPDDFLPSVMTCVNYLKLPDYS 1969          
BLAST of EY685218 vs. ExPASy Swiss-Prot
Match: YDE1_SCHPO (Probable ubiquitin fusion degradation protein C12B10.01c OS=Schizosaccharomyces pombe GN=SPAC12B10.01c PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.104e-12
Identity = 50/167 (29.94%), Postives = 80/167 (47.90%), Query Frame = 3
Query:  129 ELIPGGRNIKVTEENKHQDVDLVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDD---MRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPGIS 620
            ELIP G +  VT  N    ++ V ++ +   ++ Q+ AF  GF+ + P   + +  + EL  L  G  D D      M++     GY+  SP IQ    ++   + +++   LQF+TG+ K+P+ GF+ L       +      Y   D+LPS  TC N L LP  S
Sbjct: 1459 ELIPDGASTPVTTFNVSDYLNYVIDYTVGKGVQQQLEAFQNGFSSVFPYTSLQVLTEHELVTLF-GTVDEDWSYATLMKSIVADHGYTMESPTIQRLLTLMSQMNFQEQRDFLQFITGSRKLPIGGFAGLNPPLTVVRRLNEPPYVPDDYLPSVMTCVNYLKLPEYS 1624          
BLAST of EY685218 vs. ExPASy Swiss-Prot
Match: HERC5_HUMAN (Probable E3 ubiquitin-protein ligase HERC5 OS=Homo sapiens GN=HERC5 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.442e-12
Identity = 55/209 (26.32%), Postives = 96/209 (45.93%), Query Frame = 3
Query:    9 LQNLKWMLENDISDVLDLTFSIDADEEKLILYERAQV----TDYELIPGGRNIKVTEENKHQDVDLVAEHRLTTAIRPQINAFLEGFTELIPGELISIFNDKELELLISGLPDIDLDDMRANTEYS-GYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFSALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLPGIS 620
            L++LK  L  D+   L      + D  + + Y    V     D  LIP G +I V + NK   V     +    +++     F  GF ++   ++I +F+ +EL+ +I G  D D      N  Y  GY+++ P I  FW+     + E+K + L F+TGT ++ ++  + ++       F   +++   D +  A TCF+ L LP  S
Sbjct:  803 LEDLK-ELSPDLGKNLQTLLDDEGDNFEEVFYIHFNVHWDRNDTNLIPNGSSITVNQTNKRDYVSKYINYIFNDSVKAVYEEFRRGFYKMCDEDIIKLFHPEELKDVIVGNTDYDWKTFEKNARYEPGYNSSHPTIVMFWKAFHKLTLEEKKKFLVFLTGTDRLQMKDLNNMK-----ITFCCPESWNERDPI-RALTCFSVLFLPKYS 1004          
BLAST of EY685218 vs. ExPASy Swiss-Prot
Match: SPKUL_DICDI (Bifunctional serine/threonine-protein kinase/NEDD4-like E3 ubiquitin-protein ligase OS=Dictyostelium discoideum GN=DDB_G0276527 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.912e-11
Identity = 50/164 (30.49%), Postives = 79/164 (48.17%), Query Frame = 3
Query:  132 LIPGGRNIKVTEENKHQDVDLVAEHRLTTAIRPQINAFLEGFTELIP-GELISIFNDKELELLISGLPDIDLDDMRANTEYSGYSAASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVPLEGFS---ALQGISGSQKFQIHKAYGSIDHLPSAHTCFNQLDLP 611
            LI GG +I VT+ NK + +    E  L    + ++ AF  GF  +       ++F+  EL+LL+ G   +D   ++ N ++ G+   S   + F   V   ++++    L+FVTG   +PL GF    ++  +  SQK            LP AHTC  QLDLP
Sbjct: 1711 LIEGGESIPVTDLNKEEFIQRNIERVLVGCRQSKLEAFKSGFMSIDSLNAHFALFSPTELQLLMCGNTLVDSSVLQKNFKFIGFPDTSSTPKDFRRAVDEMNQDEIRLFLRFVTGMVALPLSGFEKSISIIQVPLSQK------------LPCAHTCSYQLDLP 1862          
The following BLAST results are available for this feature:
BLAST of EY685218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
HECD1_HUMAN1.703e-1330.59E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens... [more]
TRIPC_HUMAN6.472e-1330.36Probable E3 ubiquitin-protein ligase TRIP12 OS=Hom... [more]
YDE1_SCHPO1.104e-1229.94Probable ubiquitin fusion degradation protein C12B... [more]
HERC5_HUMAN1.442e-1226.32Probable E3 ubiquitin-protein ligase HERC5 OS=Homo... [more]
SPKUL_DICDI7.912e-1130.49Bifunctional serine/threonine-protein kinase/NEDD4... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-011-C03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685218 ID=EY685218; Name=EY685218; organism=Citrus sinensis; type=EST; length=938bp
CCGGATTACTTCAAAACCTGAAGTGGATGCTTGAGAATGACATCAGTGAT
GTTCTTGACCTCACTTTTAGTATTGATGCTGATGAGGAGAAGCTGATTTT
GTATGAAAGGGCGCAGGTAACCGACTATGAGCTAATTCCTGGTGGACGGA
ATATTAAAGTTACTGAGGAGAATAAGCACCAGGATGTGGATTTAGTCGCG
GAGCATCGTTTGACGACTGCTATTCGGCCTCAAATAAATGCTTTTCTGGA
GGGATTTACCGAACTAATTCCTGGGGAGTTGATATCTATCTTCAATGACA
AGGAATTAGAATTATTGATTAGTGGGCTTCCGGATATTGATTTGGATGAC
ATGAGGGCAAATACGGAATATTCTGGATATAGTGCTGCATCTCCTGTTAT
CCAGTGGTTTTGGGAGGTTGTTCAAGGGTTCAGCAAGGAGGATAAGGCTC
GTCTTCTGCAGTTTGTGACTGGCACCTCAAAGGTGCCCTTGGAAGGTTTC
AGTGCACTTCAAGGAATTTCAGGTTCACAGAAGTTTCAAATACACAAGGC
ATATGGCAGCATAGATCATTTGCCTTCTGCTCATACTTGTTTCAATCAAT
TAGATTTGCCGGGAATATCCTTCTAAGCAGCATCTAAGAGGAGAAGACTG
CTGCTTGCAATTCATGAAGGAATGAAGGGGTTTGGGATTTGGTTACATAA
ATTTGGGTATTTCTCCAGAATAGTGTAAAATAAAATATATATATTATCCC
AAAAGCTTGCATTGGGAAGAGGAAATGGGTAAAAAGGGGGGATTCCCATT
TCTAATTCAAAAATTGTTTTTTTTATTGGCAGCCATAATTTTGGGCTATT
GGAAAATTAACATGGGGAGGTTTGAAATTTTGCCACATGGGCCCCTTATT
TTTTTCGAAAATCTCCTTTTTCCCCTTTTTTGGTTTTC
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