EY685214

Overview
NameEY685214
Unique NameEY685214
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length451
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY685214 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 8.464e-17
Identity = 39/49 (79.59%), Postives = 42/49 (85.71%), Query Frame = 3 
Query:   12 VSKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 158
            +SKVLLSICSLL DPNPDDPLVPEIA +YKTDR KY   AR WT+KYAM
Sbjct:   99 ISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREWTRKYAM 147
[Close]
BLAST of EY685214 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.463e-16
Identity = 38/49 (77.55%), Postives = 44/49 (89.80%), Query Frame = 3 
Query:   12 VSKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 158
            +SKVLLSICSLLTD NPDDPLVPEIA +YKTD+ KYE TA+ WT+KYA+
Sbjct:  100 LSKVLLSICSLLTDANPDDPLVPEIAQIYKTDKAKYEATAKEWTKKYAV 148
[Close]
BLAST of EY685214 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.201e-16
Identity = 38/49 (77.55%), Postives = 42/49 (85.71%), Query Frame = 3 
Query:   12 VSKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 158
            VSKVLLSICSLL DPNPDDPLVP+IA +YK+D+ KY   AR WTQKYAM
Sbjct:   99 VSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM 147
[Close]
BLAST of EY685214 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.201e-16
Identity = 38/49 (77.55%), Postives = 42/49 (85.71%), Query Frame = 3 
Query:   12 VSKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 158
            VSKVLLSICSLL DPNPDDPLVP+IA +YK+D+ KY   AR WTQKYAM
Sbjct:   99 VSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM 147
[Close]
BLAST of EY685214 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 4.201e-16
Identity = 38/49 (77.55%), Postives = 42/49 (85.71%), Query Frame = 3 
Query:   12 VSKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRNKYETTARSWTQKYAM 158
            VSKVLLSICSLL DPNPDDPLVP+IA +YK+D+ KY   AR WTQKYAM
Sbjct:   99 VSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM 147
The following BLAST results are available for this feature:
BLAST of EY685214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
UBCD1_DROME8.464e-1779.59Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC5_YEAST2.463e-1677.55Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UB2D1_MOUSE4.201e-1677.55Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus... [more]
UB2D1_HUMAN4.201e-1677.55Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens... [more]
UB2D1_BOVIN4.201e-1677.55Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-011-B11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685214 ID=EY685214; Name=EY685214; organism=Citrus sinensis; type=EST; length=451bp
CGGACGCGTGGGTTTCCAAGGTGTTGCTATCAATCTGTTCATTATTGACG
GATCCAAATCCCGATGATCCGTTGGTACCAGAAATTGCTCACATGTACAA
GACCGACAGGAACAAGTACGAGACAACTGCAAGGAGCTGGACCCAGAAGT
ATGCCATGGGCTAAACCTGGGTTATGGTGTGTGAGGGGGTTCCTTTTCTT
TTTAATTCTGGTTTCGAGTTAATGTATGAATATTCTGTCTGTTCAATCCT
AAAAAGTGGACCATAAGAAAGGTCCACTACATCCCCCGAATTGGAAAGGA
GAAACGGGTTGCTTCTTAATTGTTGTATGGATAATGTCACTTTGGTCAAT
CAAATGTGTTCTGATAATGTCACTTGGTCAGCCAAATTTGTACGTCCATT
CTGAATGATAAAAATCTTTCTTTCTAGTTGCTCTTGAAAAAAAAAAAAAA
A
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