EY684896

Overview
NameEY684896
Unique NameEY684896
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length951
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684896 vs. ExPASy Swiss-Prot
Match: LBD13_ARATH (LOB domain-containing protein 13 OS=Arabidopsis thaliana GN=LBD13 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 1.050e-26
Identity = 53/86 (61.63%), Postives = 66/86 (76.74%), Query Frame = 2
Query:   92 CAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQV 349
            CAACK+LRRRC E+C  +PYF P EP+KF   H+VFGASN+ K L E+ ESQR DA +S+VYEA+ R+RDP+YGC GAI  LQ  +
Sbjct:   53 CAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGESQRGDAANSLVYEANLRLRDPIYGCMGAISALQHHI 138          
BLAST of EY684896 vs. ExPASy Swiss-Prot
Match: LBD6_ARATH (LOB domain-containing protein 6 OS=Arabidopsis thaliana GN=LBD6 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.989e-26
Identity = 54/86 (62.79%), Postives = 63/86 (73.26%), Query Frame = 2
Query:   92 CAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQV 349
            CAACK LRR+C  +CV APYFPP +P KF   H+VFGASN+ K L EL  SQR DAV+S+ YEA  R+RDPVYGC G I  LQ Q+
Sbjct:   10 CAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQL 95          
BLAST of EY684896 vs. ExPASy Swiss-Prot
Match: LBD6_MAIZE (LOB domain-containing protein 6 OS=Zea mays GN=LBD6 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.824e-25
Identity = 53/83 (63.86%), Postives = 58/83 (69.88%), Query Frame = 2
Query:   92 CAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQ 340
            CAACK LRR+C   CV APYFPP  P KF   HRVFGASN+ K L EL   QR DAV+S+ YEA  R+RDPVYGC G I  LQ
Sbjct:   34 CAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQREDAVNSLAYEADMRLRDPVYGCVGVISILQ 116          
BLAST of EY684896 vs. ExPASy Swiss-Prot
Match: LBD24_ARATH (LOB domain-containing protein 24 OS=Arabidopsis thaliana GN=LBD24 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.189e-24
Identity = 48/86 (55.81%), Postives = 62/86 (72.09%), Query Frame = 2
Query:   92 CAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQV 349
            CAACK LRRRC + CV +PYFPP +P KF   HR++GA N+ K LQ+LP+  RA+AV S+ +EA  R+ DPVYGC G I  L+ Q+
Sbjct:    6 CAACKYLRRRCPKDCVFSPYFPPNDPQKFACVHRIYGAGNVSKMLQQLPDQTRAEAVESLCFEAKCRVDDPVYGCVGIIHLLKTQI 91          
BLAST of EY684896 vs. ExPASy Swiss-Prot
Match: LBD23_ARATH (LOB domain-containing protein 23 OS=Arabidopsis thaliana GN=LBD23 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.189e-24
Identity = 48/86 (55.81%), Postives = 62/86 (72.09%), Query Frame = 2
Query:   92 CAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQV 349
            CAACK LRRRC + CV +PYFPP +P KF   HR++GA N+ K LQ+LP+  RA+AV S+ +EA  R+ DPVYGC G I  L+ Q+
Sbjct:    6 CAACKYLRRRCPKDCVFSPYFPPNDPQKFACVHRIYGAGNVSKMLQQLPDQTRAEAVESLCFEAKCRVDDPVYGCVGIIHLLKTQI 91          
BLAST of EY684896 vs. ExPASy Swiss-Prot
Match: LBD6_ORYSJ (LOB domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=LBD6 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.858e-24
Identity = 52/86 (60.47%), Postives = 59/86 (68.60%), Query Frame = 2
Query:   92 CAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQV 349
            CAACK LRR+C   CV APYFPP  P KF   HRVFGASN+ K L EL   QR DAV+S+ YEA  R+RDPVYGC   I  LQ+ +
Sbjct:   39 CAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVAIISILQRNL 124          
BLAST of EY684896 vs. ExPASy Swiss-Prot
Match: LBD6_ORYSI (LOB domain-containing protein 6 OS=Oryza sativa subsp. indica GN=LBD6 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.858e-24
Identity = 52/86 (60.47%), Postives = 59/86 (68.60%), Query Frame = 2
Query:   92 CAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQV 349
            CAACK LRR+C   CV APYFPP  P KF   HRVFGASN+ K L EL   QR DAV+S+ YEA  R+RDPVYGC   I  LQ+ +
Sbjct:   39 CAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDAVNSLAYEADMRLRDPVYGCVAIISILQRNL 124          
BLAST of EY684896 vs. ExPASy Swiss-Prot
Match: IAL1_MAIZE (Protein IAL1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.733e-24
Identity = 51/83 (61.45%), Postives = 58/83 (69.88%), Query Frame = 2
Query:   92 CAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQ 340
            CAACK LRR+C   CV APYFPP  P KF   HRVFGASN+ K + E+   QR DA++S+ YEA  RIRDPVYGC G I  LQ
Sbjct:   34 CAACKFLRRKCQPDCVFAPYFPPDNPQKFVRVHRVFGASNVTKLMNEIHPLQREDAMNSLAYEADMRIRDPVYGCVGVISILQ 116          
BLAST of EY684896 vs. ExPASy Swiss-Prot
Match: LBD21_ARATH (LOB domain-containing protein 21 OS=Arabidopsis thaliana GN=LBD21 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.391e-23
Identity = 47/86 (54.65%), Postives = 62/86 (72.09%), Query Frame = 2
Query:   92 CAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQV 349
            CAACK+L+RRC   C+ APYF  ++   F   H+VFGASN+ K L E+PE QR + V+S+ YEA  R++DPVYGC GAI  LQK++
Sbjct:   12 CAACKLLKRRCTPTCIFAPYFRSSDLITFAKVHKVFGASNVSKLLGEVPEEQRQETVNSLAYEAEVRLKDPVYGCIGAIASLQKKM 97          
BLAST of EY684896 vs. ExPASy Swiss-Prot
Match: LBD31_ARATH (LOB domain-containing protein 31 OS=Arabidopsis thaliana GN=LBD31 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 3.863e-21
Identity = 51/87 (58.62%), Postives = 58/87 (66.67%), Query Frame = 2
Query:   92 CAACKILRRRCVEKCVLAPYFPPTEPYK-FTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQV 349
            C ACK LRR+CV  CV APYF   E    FT  H+VFGASN  K L  +P S+R DAV ++ YEA AR+RDPVYGC G I  LQ QV
Sbjct:   12 CGACKFLRRKCVADCVFAPYFDSVEGTSHFTAVHKVFGASNASKLLMMIPASRRLDAVVTLTYEALARLRDPVYGCVGHIFALQHQV 98          
The following BLAST results are available for this feature:
BLAST of EY684896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
LBD13_ARATH1.050e-2661.63LOB domain-containing protein 13 OS=Arabidopsis th... [more]
LBD6_ARATH3.989e-2662.79LOB domain-containing protein 6 OS=Arabidopsis tha... [more]
LBD6_MAIZE9.824e-2563.86LOB domain-containing protein 6 OS=Zea mays GN=LBD... [more]
LBD24_ARATH2.189e-2455.81LOB domain-containing protein 24 OS=Arabidopsis th... [more]
LBD23_ARATH2.189e-2455.81LOB domain-containing protein 23 OS=Arabidopsis th... [more]
LBD6_ORYSJ2.858e-2460.47LOB domain-containing protein 6 OS=Oryza sativa su... [more]
LBD6_ORYSI2.858e-2460.47LOB domain-containing protein 6 OS=Oryza sativa su... [more]
IAL1_MAIZE3.733e-2461.45Protein IAL1 OS=Zea mays PE=2 SV=1[more]
LBD21_ARATH5.391e-2354.65LOB domain-containing protein 21 OS=Arabidopsis th... [more]
LBD31_ARATH3.863e-2158.62LOB domain-containing protein 31 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-005-A06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684896 ID=EY684896; Name=EY684896; organism=Citrus sinensis; type=EST; length=951bp
CCCGCGTCCGCCAAGCTTTAAAGCTTCCCCTTCACAATCCTCTCCAAATC
TTGCAGATCCCCTCTCTCCGCCGCCTATACTTCTTAGCCCTTGTGCTGCC
TGCAAAATCCTCCGCCGCAGATGCGTCGAGAAATGTGTTTTAGCTCCATA
TTTTCCACCAACCGAACCATACAAGTTCACCATTGCTCATAGGGTCTTCG
GTGCAAGCAATATCATCAAGTTCTTGCAGGAACTGCCAGAATCTCAACGA
GCAGATGCAGTGAGCAGCATGGTCTATGAAGCAAGTGCCAGAATCCGGGA
TCCTGTTTACGGCTGCGCCGGGGCTATTTGCCATCTCCAGAAACAAGTCA
GTGAGCTTCAGGCTCAGTTAGCCAAGGCACAGGCTGAGCTTGTCACCATG
GAAAGCCAGCAACGCAATTTAATAACTCTAATTTGCATGGAAATGGCACA
ATCTCAAGAACAAGTCTTGCAGCAGCAGCAGCAGCAGCAGCAACAGTTCC
ATGGATACTAGTTGTTTTTTGGATGACAATGGTATTGGATCAGCTTGGGA
GCCCTCTGCGGACATGATCAAGAAAAATTAAAGCAAGATTGATGAAATTT
TAACCTTTTTAAAAGATTATTTACTTAAAGCCAACTATCCTTAAATTATC
AAAGTTTCCTGATCAAAATTCAAGCAATTAAAGGTACGGGAACACAAACA
ACGAAGCGCGCCACGCCAAACCGCCCACACCCCGATCGCGCTAAAACTCC
ACAAGTTGACTCCTCCACCTGGACAACACAACAGTACTAACTAACCAAAC
ACATGACAAACATGCTCCAAACAAAAAAAGCCCCCCCTCCACACTACTCA
ATCTCCAAGACACAACACCTCACCACGTTGGCGCTCACATCCACACACCC
ACCTAACAGTGACCTCCACCTCATCCTTGCGCCCCACCACACGACCGCCC
A
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