EY684896

Overview
NameEY684896
Unique NameEY684896
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length951
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684896 vs. ExPASy Swiss-Prot
Match: LBD30_ARATH (LOB domain-containing protein 30 OS=Arabidopsis thaliana GN=LBD30 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.271e-20
Identity = 46/87 (52.87%), Postives = 58/87 (66.67%), Query Frame = 2
Query:   92 CAACKILRRRCVEKCVLAPYFPPTE-PYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQV 349
            C ACK LRR+CV  C+ APYF   +    F   H+VFGASN+ K L  +PE +R DAV S+ +EA AR+RDP+YGC   I  LQ+QV
Sbjct:   18 CGACKFLRRKCVAGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLHHVPEHKRPDAVVSICFEAQARLRDPIYGCVSHIVSLQQQV 104          
BLAST of EY684896 vs. ExPASy Swiss-Prot
Match: LBD18_ARATH (LOB domain-containing protein 18 OS=Arabidopsis thaliana GN=LBD18 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 2.120e-19
Identity = 46/87 (52.87%), Postives = 58/87 (66.67%), Query Frame = 2
Query:   92 CAACKILRRRCVEKCVLAPYFPPTEPYK-FTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQV 349
            C ACK LRR+CV  C+ APYF   +    F   H+VFGASN+ K L  +P  +R+DAV ++ YEA ARIRDP+YGC   I  LQ+QV
Sbjct:   38 CGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPVHRRSDAVVTICYEAQARIRDPIYGCVAHIFALQQQV 124          
BLAST of EY684896 vs. ExPASy Swiss-Prot
Match: LBD20_ARATH (LOB domain-containing protein 20 OS=Arabidopsis thaliana GN=LBD20 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 6.168e-19
Identity = 44/88 (50.00%), Postives = 59/88 (67.05%), Query Frame = 2
Query:   92 CAACKILRRRCVEKCVLAPYFPPTE-PYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVS 352
            C ACK LRR+CV  C+ AP+F   +   +F   H+VFGASN+ K L  +P ++R DAV ++ YEA AR+ DPVYGC   I  LQ+QV+
Sbjct:   52 CGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLHHIPVNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVA 139          
BLAST of EY684896 vs. ExPASy Swiss-Prot
Match: LBD19_ARATH (LOB domain-containing protein 19 OS=Arabidopsis thaliana GN=LBD19 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 6.168e-19
Identity = 48/87 (55.17%), Postives = 57/87 (65.52%), Query Frame = 2
Query:   92 CAACKILRRRCVEKCVLAPYFPPTE-PYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQV 349
            C ACK LRR+CV+ CV APYF   +   +F   H+VFGASN  K L  LP  +R DAV ++ YEA ARIRDPVYG  G +  LQ QV
Sbjct:   17 CGACKFLRRKCVKGCVFAPYFDAEQGTARFAAVHKVFGASNASKMLLRLPLHKRLDAVVTLCYEAMARIRDPVYGSVGHLFSLQHQV 103          
BLAST of EY684896 vs. ExPASy Swiss-Prot
Match: LBD14_ARATH (LOB domain-containing protein 14 OS=Arabidopsis thaliana GN=LBD14 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 8.055e-19
Identity = 45/87 (51.72%), Postives = 55/87 (63.22%), Query Frame = 2
Query:   92 CAACKILRRRCVEKCVLAPYFPPTE-PYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQV 349
            C  CK LRR+CVE CV APYF   E    F   H+VFGASN  K +  LP+  R DAV ++ YEA +R+ DP+YGC   I  LQ+QV
Sbjct:    8 CGGCKFLRRKCVEGCVFAPYFCYEEGSSNFAAIHKVFGASNFSKLISHLPDHDRCDAVRTISYEAHSRLHDPIYGCVSQIFSLQQQV 94          
BLAST of EY684896 vs. ExPASy Swiss-Prot
Match: LBD16_ARATH (LOB domain-containing protein 16 OS=Arabidopsis thaliana GN=LBD16 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.998e-18
Identity = 43/88 (48.86%), Postives = 56/88 (63.64%), Query Frame = 2
Query:   92 CAACKILRRRCVEKCVLAPYFPPTE-PYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVS 352
            C ACK LRR+C   C+ APYF   +   +F   H+VFGASN+ K L  +P   R +AV ++ YEA AR+ DPVYGC   I  LQ+QV+
Sbjct:   16 CGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLNVPIHDRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVA 103          
BLAST of EY684896 vs. ExPASy Swiss-Prot
Match: LBD17_ARATH (LOB domain-containing protein 17 OS=Arabidopsis thaliana GN=LBD17 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.163e-17
Identity = 45/87 (51.72%), Postives = 55/87 (63.22%), Query Frame = 2
Query:   92 CAACKILRRRCVEKCVLAPYFPPTEPYK-FTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQV 349
            C ACK LRRRCV+ CV APYF   +    F   H+VFGASN  K L  LP   R +A +++ YEA AR +DP+YGC   I  LQ+QV
Sbjct:    8 CGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDRREAATTIYYEAQARRQDPIYGCVSHIFSLQQQV 94          
BLAST of EY684896 vs. ExPASy Swiss-Prot
Match: LBD29_ARATH (LOB domain-containing protein 29 OS=Arabidopsis thaliana GN=LBD29 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.984e-17
Identity = 44/87 (50.57%), Postives = 55/87 (63.22%), Query Frame = 2
Query:   92 CAACKILRRRCVEKCVLAPYFPPTEPYK-FTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQV 349
            C ACK LRR+C + CV APYF   +    F   H+VFGASN  K L  LP S R +A  ++ YEA AR++DP+YGC   I  LQ+QV
Sbjct:   12 CGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPISDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQV 98          
BLAST of EY684896 vs. ExPASy Swiss-Prot
Match: LBD27_ARATH (LOB domain-containing protein 27 OS=Arabidopsis thaliana GN=LBD27 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.984e-17
Identity = 39/86 (45.35%), Postives = 56/86 (65.12%), Query Frame = 2
Query:   92 CAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQV 349
            CAACK  RRRC   C LAPYFP  +P  F   HR+FG  +I+K L++L E+Q+ +A+ S+++++  R R PV+GC G    LQ  +
Sbjct:   37 CAACKYQRRRCAADCPLAPYFPAEQPKLFQNVHRLFGVRSIVKILEKLDETQKPEAMKSIIFQSYVRDRSPVHGCLGVTQQLQYMI 122          
BLAST of EY684896 vs. ExPASy Swiss-Prot
Match: LBD22_ARATH (LOB domain-containing protein 22 OS=Arabidopsis thaliana GN=LBD22 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 7.540e-17
Identity = 46/116 (39.66%), Postives = 64/116 (55.17%), Query Frame = 2
Query:    2 PRPPSFKASPSQSSPNLADXXXXXXXXXXXCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQV 349
            P+P   K S S SS N              CAACK  RR+C   C+LAPYFP     +F  AH++FG SNI K ++ L   ++  A+ ++++++ AR  DPV GC G I  LQ Q+
Sbjct:   14 PKPTPLKPSSSTSSSN-------NNSTNQACAACKYQRRKCAPDCLLAPYFPHDRHRQFLNAHKLFGVSNITKIIKSLTPPEKDAAMHTIMFQSDARANDPVDGCYGIIKKLQYQI 122          
The following BLAST results are available for this feature:
BLAST of EY684896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
LBD30_ARATH4.271e-2052.87LOB domain-containing protein 30 OS=Arabidopsis th... [more]
LBD18_ARATH2.120e-1952.87LOB domain-containing protein 18 OS=Arabidopsis th... [more]
LBD20_ARATH6.168e-1950.00LOB domain-containing protein 20 OS=Arabidopsis th... [more]
LBD19_ARATH6.168e-1955.17LOB domain-containing protein 19 OS=Arabidopsis th... [more]
LBD14_ARATH8.055e-1951.72LOB domain-containing protein 14 OS=Arabidopsis th... [more]
LBD16_ARATH3.998e-1848.86LOB domain-containing protein 16 OS=Arabidopsis th... [more]
LBD17_ARATH1.163e-1751.72LOB domain-containing protein 17 OS=Arabidopsis th... [more]
LBD29_ARATH1.984e-1750.57LOB domain-containing protein 29 OS=Arabidopsis th... [more]
LBD27_ARATH1.984e-1745.35LOB domain-containing protein 27 OS=Arabidopsis th... [more]
LBD22_ARATH7.540e-1739.66LOB domain-containing protein 22 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-005-A06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684896 ID=EY684896; Name=EY684896; organism=Citrus sinensis; type=EST; length=951bp
CCCGCGTCCGCCAAGCTTTAAAGCTTCCCCTTCACAATCCTCTCCAAATC
TTGCAGATCCCCTCTCTCCGCCGCCTATACTTCTTAGCCCTTGTGCTGCC
TGCAAAATCCTCCGCCGCAGATGCGTCGAGAAATGTGTTTTAGCTCCATA
TTTTCCACCAACCGAACCATACAAGTTCACCATTGCTCATAGGGTCTTCG
GTGCAAGCAATATCATCAAGTTCTTGCAGGAACTGCCAGAATCTCAACGA
GCAGATGCAGTGAGCAGCATGGTCTATGAAGCAAGTGCCAGAATCCGGGA
TCCTGTTTACGGCTGCGCCGGGGCTATTTGCCATCTCCAGAAACAAGTCA
GTGAGCTTCAGGCTCAGTTAGCCAAGGCACAGGCTGAGCTTGTCACCATG
GAAAGCCAGCAACGCAATTTAATAACTCTAATTTGCATGGAAATGGCACA
ATCTCAAGAACAAGTCTTGCAGCAGCAGCAGCAGCAGCAGCAACAGTTCC
ATGGATACTAGTTGTTTTTTGGATGACAATGGTATTGGATCAGCTTGGGA
GCCCTCTGCGGACATGATCAAGAAAAATTAAAGCAAGATTGATGAAATTT
TAACCTTTTTAAAAGATTATTTACTTAAAGCCAACTATCCTTAAATTATC
AAAGTTTCCTGATCAAAATTCAAGCAATTAAAGGTACGGGAACACAAACA
ACGAAGCGCGCCACGCCAAACCGCCCACACCCCGATCGCGCTAAAACTCC
ACAAGTTGACTCCTCCACCTGGACAACACAACAGTACTAACTAACCAAAC
ACATGACAAACATGCTCCAAACAAAAAAAGCCCCCCCTCCACACTACTCA
ATCTCCAAGACACAACACCTCACCACGTTGGCGCTCACATCCACACACCC
ACCTAACAGTGACCTCCACCTCATCCTTGCGCCCCACCACACGACCGCCC
A
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