EY684896

Overview
NameEY684896
Unique NameEY684896
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length951
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684896 vs. ExPASy Swiss-Prot
Match: LBD33_ARATH (LOB domain-containing protein 33 OS=Arabidopsis thaliana GN=LBD33 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.865e-16
Identity = 43/87 (49.43%), Postives = 54/87 (62.07%), Query Frame = 2
Query:   92 CAACKILRRRCVEKCVLAPYFPPTEPYK-FTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQV 349
            C ACK LRR+C   CV +PYF   +    F   H+VFGASN+ K L  LP+ QR  A  ++ YEA +R+RDPVYGC   I  L +QV
Sbjct:    8 CGACKFLRRKCNRDCVFSPYFSYEQASSHFAAVHKVFGASNVSKHLLHLPQHQRNIAAITISYEALSRMRDPVYGCVAHIFALHQQV 94          
BLAST of EY684896 vs. ExPASy Swiss-Prot
Match: LBD35_ARATH (LOB domain-containing protein 35 OS=Arabidopsis thaliana GN=LBD35 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.742e-16
Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 2
Query:   92 CAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQV 349
            C+ACK+++  C   C+ AP+FP T    F   HR+FGA N+ K L  L   QR  AV+++ YEA A  RDP++GC G   H + Q+
Sbjct:    6 CSACKVMKCDCAPNCIFAPHFPLTNLETFERLHRIFGAGNVFKILANLDPIQRETAVNALCYEAEALERDPIFGCVGIFNHYKNQL 91          
BLAST of EY684896 vs. ExPASy Swiss-Prot
Match: LBD28_ARATH (LOB domain-containing protein 28 OS=Arabidopsis thaliana GN=LBD28 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.742e-16
Identity = 39/86 (45.35%), Postives = 53/86 (61.63%), Query Frame = 2
Query:   92 CAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQV 349
            CAACK LRR+C E CV APYFP T+   +   H+VFGAS++   +  L   QR  A+ ++ +EA  +  DPV GC G I +L  Q+
Sbjct:   13 CAACKHLRRKCTEDCVFAPYFPSTKLDNYEAVHKVFGASHVATLINSLHPCQREFAMDTLAWEAQVQANDPVNGCLGIIYNLLSQI 98          
BLAST of EY684896 vs. ExPASy Swiss-Prot
Match: LBD7_ARATH (LOB domain-containing protein 7 OS=Arabidopsis thaliana GN=LBD7 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 8.336e-16
Identity = 40/86 (46.51%), Postives = 56/86 (65.12%), Query Frame = 2
Query:   92 CAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQV 349
            CAACK  R++C + C+LA YFP     KF  AH++FG SNI K L+ + ESQR  A+ +++Y A+AR  DPV G    IC L+ ++
Sbjct:   14 CAACKHQRKKCKKNCILARYFPQDGTNKFLNAHKLFGVSNITKMLKRIEESQRDIAMENLIYHANARALDPVGGVYRTICDLKCKI 99          
BLAST of EY684896 vs. ExPASy Swiss-Prot
Match: LBD2_ARATH (LOB domain-containing protein 2 OS=Arabidopsis thaliana GN=LBD2 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.246e-11
Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 2
Query:   92 CAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAG 322
            CA+CK  R++C  +C+L+PYFP  +  +F   H+VFG SN+ K ++ + E  R     S+ +EA  R +DPV G  G
Sbjct:   25 CASCKHQRKKCNNECILSPYFPARKTKEFQAVHKVFGVSNVQKMVRTVREEDRTKLSDSLTWEALWRQKDPVLGSYG 101          
The following BLAST results are available for this feature:
BLAST of EY684896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
LBD33_ARATH2.865e-1649.43LOB domain-containing protein 33 OS=Arabidopsis th... [more]
LBD35_ARATH3.742e-1643.02LOB domain-containing protein 35 OS=Arabidopsis th... [more]
LBD28_ARATH3.742e-1645.35LOB domain-containing protein 28 OS=Arabidopsis th... [more]
LBD7_ARATH8.336e-1646.51LOB domain-containing protein 7 OS=Arabidopsis tha... [more]
LBD2_ARATH1.246e-1140.26LOB domain-containing protein 2 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-005-A06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684896 ID=EY684896; Name=EY684896; organism=Citrus sinensis; type=EST; length=951bp
CCCGCGTCCGCCAAGCTTTAAAGCTTCCCCTTCACAATCCTCTCCAAATC
TTGCAGATCCCCTCTCTCCGCCGCCTATACTTCTTAGCCCTTGTGCTGCC
TGCAAAATCCTCCGCCGCAGATGCGTCGAGAAATGTGTTTTAGCTCCATA
TTTTCCACCAACCGAACCATACAAGTTCACCATTGCTCATAGGGTCTTCG
GTGCAAGCAATATCATCAAGTTCTTGCAGGAACTGCCAGAATCTCAACGA
GCAGATGCAGTGAGCAGCATGGTCTATGAAGCAAGTGCCAGAATCCGGGA
TCCTGTTTACGGCTGCGCCGGGGCTATTTGCCATCTCCAGAAACAAGTCA
GTGAGCTTCAGGCTCAGTTAGCCAAGGCACAGGCTGAGCTTGTCACCATG
GAAAGCCAGCAACGCAATTTAATAACTCTAATTTGCATGGAAATGGCACA
ATCTCAAGAACAAGTCTTGCAGCAGCAGCAGCAGCAGCAGCAACAGTTCC
ATGGATACTAGTTGTTTTTTGGATGACAATGGTATTGGATCAGCTTGGGA
GCCCTCTGCGGACATGATCAAGAAAAATTAAAGCAAGATTGATGAAATTT
TAACCTTTTTAAAAGATTATTTACTTAAAGCCAACTATCCTTAAATTATC
AAAGTTTCCTGATCAAAATTCAAGCAATTAAAGGTACGGGAACACAAACA
ACGAAGCGCGCCACGCCAAACCGCCCACACCCCGATCGCGCTAAAACTCC
ACAAGTTGACTCCTCCACCTGGACAACACAACAGTACTAACTAACCAAAC
ACATGACAAACATGCTCCAAACAAAAAAAGCCCCCCCTCCACACTACTCA
ATCTCCAAGACACAACACCTCACCACGTTGGCGCTCACATCCACACACCC
ACCTAACAGTGACCTCCACCTCATCCTTGCGCCCCACCACACGACCGCCC
A
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