EY684888

Overview
NameEY684888
Unique NameEY684888
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length947
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS1_ACEAT (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Acetabularia acetabulum GN=RBCS-1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.490e-12
Identity = 43/133 (32.33%), Postives = 65/133 (48.87%), Query Frame = 2 
Query:  224 VWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQL-EKGWVYREH-----HKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD----DAGGPERNIHIF------STELSDFTTTRPVQRITLQLP 574
            VW P   K FET S+LPPL+DE + ++++Y+L + W PCLEF   ++ +   E+          Y + RYWT  K+ MFG    +QVL +        P+  I +         ++S F   RP      +LP
Sbjct:   45 VWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPPSATDYRLP 177
[Close]
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS5_ACEAT (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia acetabulum GN=RBCS-5 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.239e-11
Identity = 43/133 (32.33%), Postives = 65/133 (48.87%), Query Frame = 2 
Query:  224 VWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQL-EKGWVYREH-----HKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD----DAGGPERNIHIF------STELSDFTTTRPVQRITLQLP 574
            VW P   K FET S+LPPL+DE + ++++Y+L + W PCLEF   ++ +   E+          Y + RYWT  K+ MFG    +QVL +        P+  I +         ++S F   RP      +LP
Sbjct:   46 VWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQVQISGFLVHRPPSATDYRLP 178
[Close]
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS4_ACEAT (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia acetabulum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.239e-11
Identity = 43/133 (32.33%), Postives = 65/133 (48.87%), Query Frame = 2 
Query:  224 VWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQL-EKGWVYREH-----HKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD----DAGGPERNIHIF------STELSDFTTTRPVQRITLQLP 574
            VW P   K FET S+LPPL+DE + ++++Y+L + W PCLEF   ++ +   E+          Y + RYWT  K+ MFG    +QVL +        P+  I +         ++S F   RP      +LP
Sbjct:   45 VWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQVQISGFLVHRPPSATDYRLP 177
[Close]
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS3_ACEAT (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia acetabulum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.239e-11
Identity = 43/133 (32.33%), Postives = 65/133 (48.87%), Query Frame = 2 
Query:  224 VWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQL-EKGWVYREH-----HKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD----DAGGPERNIHIF------STELSDFTTTRPVQRITLQLP 574
            VW P   K FET S+LPPL+DE + ++++Y+L + W PCLEF   ++ +   E+          Y + RYWT  K+ MFG    +QVL +        P+  I +         ++S F   RP      +LP
Sbjct:   45 VWQPFNNKMFETFSFLPPLTDEQISKQVDYILINSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDASQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPPSATDYKLP 177
The following BLAST results are available for this feature:
BLAST of EY684888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
RBS1_ACEAT9.490e-1232.33Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS5_ACEAT1.239e-1132.33Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS4_ACEAT1.239e-1132.33Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS3_ACEAT1.239e-1132.33Ribulose bisphosphate carboxylase small chain 3, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-004-H08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684888 ID=EY684888; Name=EY684888; organism=Citrus sinensis; type=EST; length=947bp
ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAACAAAAAAGA
AAAACAACAAAACCCAAAAGCCACCGCGGAGCGGCGCCTCTAAAGACACA
AGACATTATGAGACACCCCCTTCAACGGGCTCACCTCTTCTACTGCTTTC
CCTTGGACCAATAAGACCAACAATGACTTTACTTCCATTTGCAAGCAACG
GAGTAAGATTCCAATGCGTGAAGGTGTGGCCACCAACTGGCTTGAAGAAG
TTCGAGACTCTCTCATACCTCCCGCCGCTGTCCGATGAAACTTTGCTCAG
GGAAATCAATTACCTTCTCCGCTCCGGCTGGATTCCCTGCTTGGAATTCC
AGCTGGAGAAAGGATGGGTGTACCGTGAGCACCACAAGACACCAAGATAC
TACAATGGACGCTACTGGACAAAGTGAAAGATGACCATGTTTGGGCGCCA
CAAACCAACCCAGGTATTAAAAGACGATGCGGGAGGTCCCGAACGAAACA
TCCACATCTTTTCGACCGAACTATCTGACTTCACAACAACCCGTCCAGTG
CAGCGAATCACCCTCCAACTCCCGCAAACCCACCACACAAGCACACGACC
CGGACAAAACAGGGGGCAACCGAACCCCCGGAACAAATAGCACCAAAAAC
AACATAACAACCCCCCCGAACGCGTAGCTGCGCGCACCGAACAGCCACCA
ATCACCGATGAGAAACCGAAAAAAAGAAAAGCCTACCTCAATCCAAACAA
CCAATTCGTAAATGCCAACCACCCAAAAACAAAACGCAAAATACAACCAT
GCCACGCTACCACAGCCGCCACTTACACCCAAACAAGAAGGCCGAAACAC
GGACCCAAGCAGCAACGAACATGCCCCCGCCTTCCACACCACCCGCAGAC
CCCAGCAAGCGCACACGTAATCACGCCGTTACCGCAAACACCGCACG
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