EY684888

Overview
NameEY684888
Unique NameEY684888
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length947
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS3B_SOLLC (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Solanum lycopersicum GN=RBCS-3B PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 6.321e-32
Identity = 61/104 (58.65%), Postives = 78/104 (75.00%), Query Frame = 2
Query:  164 RPTMTLLPFASNGVRFQCVKVWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQLEKGWVYREHHKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD 475
            +  + +   ASNG R  C++VWPP  +KK+ETLSYLP LSDE LL EI YLL++GW+PCLEF+ E G+VYRE+HK+P YY+GRYWT  K+ MFG    TQVL +
Sbjct:   40 KQNLDITSIASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAE 143          
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS3A_SOLLC (Ribulose bisphosphate carboxylase small chain 3A/3C, chloroplastic OS=Solanum lycopersicum GN=RBCS-3A/3C PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 6.321e-32
Identity = 61/104 (58.65%), Postives = 78/104 (75.00%), Query Frame = 2
Query:  164 RPTMTLLPFASNGVRFQCVKVWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQLEKGWVYREHHKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD 475
            +  + +   ASNG R  C++VWPP  +KK+ETLSYLP LSDE LL EI YLL++GW+PCLEF+ E G+VYRE+HK+P YY+GRYWT  K+ MFG    TQVL +
Sbjct:   40 KQNLDITSIASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAE 143          
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS1_SOLTU (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum tuberosum GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 6.321e-32
Identity = 59/104 (56.73%), Postives = 80/104 (76.92%), Query Frame = 2
Query:  164 RPTMTLLPFASNGVRFQCVKVWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQLEKGWVYREHHKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD 475
            +  + +   ASNG R +C++VWPP  +KK+ETLSYLP L+DE LL+E+ YLL++GW+PCLEF+ E G+VYRE+HK+P YY+GRYWT  K+ MFG    TQVL +
Sbjct:   41 KQNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLTDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAE 144          
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS_MUSAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Musa acuminata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.137e-31
Identity = 67/133 (50.38%), Postives = 85/133 (63.91%), Query Frame = 2
Query:  164 RPTMTLLPFASNGVRFQCVKVWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQLEKGWVYREHHKTPRYYNGRYWTK*KMTMFGRHKPTQVLKDDAGGPERNIHIFSTELSDFTTTRPVQRIT 562
            +P   L    SNG R QC+KVWP  G+KKFETLSYLP + DE L+++I YLLRS WIPCLEF   KG+V+RE+H++P YY+GRYWT  K+ MFG     QV K+     +   H F   +  F   R VQ I+
Sbjct:   41 KPNADLSHLPSNGGRVQCMKVWPIEGVKKFETLSYLPTMKDEALVKQIEYLLRSKWIPCLEF-CPKGFVWRENHRSPGYYDGRYWTMWKLPMFGCTDAVQVAKEVEECKKEYPHAF-IRIIGFDNNRQVQCIS 171          

HSP 2 Score: 28.8758 bits (63), Expect = 1.137e-31
Identity = 12/24 (50.00%), Postives = 16/24 (66.67%), Query Frame = 1
Query:  118 PFNGLTSSTAFPWTNKTNNDFTSI 189
            PF GL S++AFP T K N D + +
Sbjct:   26 PFTGLKSASAFPVTRKPNADLSHL 49          
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS7_FLAPR (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Flaveria pringlei GN=RBCS7 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.483e-31
Identity = 56/95 (58.95%), Postives = 75/95 (78.95%), Query Frame = 2
Query:  191 ASNGVRFQCVKVWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQLEKGWVYREHHKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD 475
            ASNG R QC+KVWPP G K++ETLSYLP L++  L +E++YLLR+ W+PCLEF+LE G+VYRE+ ++P YY+GRYWT  K+ MFG     QV+K+
Sbjct:   42 ASNGGRVQCMKVWPPLGKKRYETLSYLPNLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKE 136          

HSP 2 Score: 29.261 bits (64), Expect = 1.483e-31
Identity = 13/31 (41.94%), Postives = 19/31 (61.29%), Query Frame = 1
Query:  118 PFNGLTSSTAFPWTNKTNNDFTSICKQRSKI 210
            PF GL S+ AFP T K  NDF+++     ++
Sbjct:   19 PFTGLKSNAAFPVTKKV-NDFSTLASNGGRV 48          
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBSC_SOLTU (Ribulose bisphosphate carboxylase small chain 2C, chloroplastic OS=Solanum tuberosum GN=RBCS-2C PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.839e-31
Identity = 59/104 (56.73%), Postives = 80/104 (76.92%), Query Frame = 2
Query:  164 RPTMTLLPFASNGVRFQCVKVWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQLEKGWVYREHHKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD 475
            +  + +   ASNG R +C++VWPP  +KK+ETLSYLP LSDE LL+E+ YLL++GW+PCLEF+ E G+VYRE++K+P YY+GRYWT  K+ MFG    TQVL +
Sbjct:   40 KQNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAE 143          
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBSB_SOLTU (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Solanum tuberosum GN=RBCS-2B PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.839e-31
Identity = 59/104 (56.73%), Postives = 80/104 (76.92%), Query Frame = 2
Query:  164 RPTMTLLPFASNGVRFQCVKVWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQLEKGWVYREHHKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD 475
            +  + +   ASNG R +C++VWPP  +KK+ETLSYLP LSDE LL+E+ YLL++GW+PCLEF+ E G+VYRE++K+P YY+GRYWT  K+ MFG    TQVL +
Sbjct:   40 KQNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAE 143          
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBSA_SOLTU (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum tuberosum GN=RBCS-2A PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.839e-31
Identity = 59/104 (56.73%), Postives = 80/104 (76.92%), Query Frame = 2
Query:  164 RPTMTLLPFASNGVRFQCVKVWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQLEKGWVYREHHKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD 475
            +  + +   ASNG R +C++VWPP  +KK+ETLSYLP LSDE LL+E+ YLL++GW+PCLEF+ E G+VYRE++K+P YY+GRYWT  K+ MFG    TQVL +
Sbjct:   40 KQNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAE 143          
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS2_NICSY (Ribulose bisphosphate carboxylase small chain S41, chloroplastic OS=Nicotiana sylvestris PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.402e-31
Identity = 60/104 (57.69%), Postives = 79/104 (75.96%), Query Frame = 2
Query:  164 RPTMTLLPFASNGVRFQCVKVWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQLEKGWVYREHHKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD 475
            +  + +   ASNG R QC++VWPP   KK+ETLSYLP LS+E LLRE+ YLL++GW+PCLEF+ E G+VYRE++K+P YY+GRYWT  K+ MFG    TQVL +
Sbjct:   41 KQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSEEQLLREVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAE 144          
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 3.137e-31
Identity = 60/104 (57.69%), Postives = 77/104 (74.04%), Query Frame = 2
Query:  164 RPTMTLLPFASNGVRFQCVKVWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQLEKGWVYREHHKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD 475
            + T  +   ASNG R QC++VWPP G K +ETLSYLPPL+ E L +E+ YLLR GW+PCLEF+LE G VYRE+H++P YY+GRYWT  K+ MFG     QVL++
Sbjct:   42 KTTTDITSIASNGGRVQCMQVWPPRGKKFYETLSYLPPLTREQLAKEVEYLLRKGWVPCLEFELEHGTVYREYHRSPGYYDGRYWTMWKLPMFGCTDAVQVLQE 145          
The following BLAST results are available for this feature:
BLAST of EY684888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
RBS3B_SOLLC6.321e-3258.65Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBS3A_SOLLC6.321e-3258.65Ribulose bisphosphate carboxylase small chain 3A/3... [more]
RBS1_SOLTU6.321e-3256.73Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_MUSAC1.137e-3150.38Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS7_FLAPR1.483e-3158.95Ribulose bisphosphate carboxylase small chain 7, c... [more]
RBSC_SOLTU1.839e-3156.73Ribulose bisphosphate carboxylase small chain 2C, ... [more]
RBSB_SOLTU1.839e-3156.73Ribulose bisphosphate carboxylase small chain 2B, ... [more]
RBSA_SOLTU1.839e-3156.73Ribulose bisphosphate carboxylase small chain 2A, ... [more]
RBS2_NICSY2.402e-3157.69Ribulose bisphosphate carboxylase small chain S41,... [more]
RBS_HEVBR3.137e-3157.69Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-004-H08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684888 ID=EY684888; Name=EY684888; organism=Citrus sinensis; type=EST; length=947bp
ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAACAAAAAAGA
AAAACAACAAAACCCAAAAGCCACCGCGGAGCGGCGCCTCTAAAGACACA
AGACATTATGAGACACCCCCTTCAACGGGCTCACCTCTTCTACTGCTTTC
CCTTGGACCAATAAGACCAACAATGACTTTACTTCCATTTGCAAGCAACG
GAGTAAGATTCCAATGCGTGAAGGTGTGGCCACCAACTGGCTTGAAGAAG
TTCGAGACTCTCTCATACCTCCCGCCGCTGTCCGATGAAACTTTGCTCAG
GGAAATCAATTACCTTCTCCGCTCCGGCTGGATTCCCTGCTTGGAATTCC
AGCTGGAGAAAGGATGGGTGTACCGTGAGCACCACAAGACACCAAGATAC
TACAATGGACGCTACTGGACAAAGTGAAAGATGACCATGTTTGGGCGCCA
CAAACCAACCCAGGTATTAAAAGACGATGCGGGAGGTCCCGAACGAAACA
TCCACATCTTTTCGACCGAACTATCTGACTTCACAACAACCCGTCCAGTG
CAGCGAATCACCCTCCAACTCCCGCAAACCCACCACACAAGCACACGACC
CGGACAAAACAGGGGGCAACCGAACCCCCGGAACAAATAGCACCAAAAAC
AACATAACAACCCCCCCGAACGCGTAGCTGCGCGCACCGAACAGCCACCA
ATCACCGATGAGAAACCGAAAAAAAGAAAAGCCTACCTCAATCCAAACAA
CCAATTCGTAAATGCCAACCACCCAAAAACAAAACGCAAAATACAACCAT
GCCACGCTACCACAGCCGCCACTTACACCCAAACAAGAAGGCCGAAACAC
GGACCCAAGCAGCAACGAACATGCCCCCGCCTTCCACACCACCCGCAGAC
CCCAGCAAGCGCACACGTAATCACGCCGTTACCGCAAACACCGCACG
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