EY684888
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. indica GN=RBCS PE=2 SV=2) HSP 1 Score: 128.257 bits (321), Expect = 6.541e-29 Identity = 59/94 (62.77%), Postives = 75/94 (79.79%), Query Frame = 2 Query: 194 SNGVRFQCVKVWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQLEKGWVYREHHKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD 475 SNG R +C++VWP G+KKFETLSYLPPL+ E LL++I YLLRS W+PCLEF + G+VYRE+H++P YY+GRYWT K+ MFG TQVLK+ Sbjct: 40 SNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKE 132
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS_SILPR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Silene pratensis GN=RBCS PE=2 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 1.116e-28 Identity = 57/101 (56.44%), Postives = 75/101 (74.26%), Query Frame = 2 Query: 164 RPTMTLLPFASNGVRFQCVKVWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQLEKGWVYREHHKTPRYYNGRYWTK*KMTMFGRHKPTQV 466 + + + A+NG R C++VWPP LKKFETLSYLP LS+E+LL+EINYLL GW+PCLEF++ VYRE++K+P YY+GRYWT K+ MFG +QV Sbjct: 39 KSNVDITSLATNGGRVNCMQVWPPRNLKKFETLSYLPTLSEESLLKEINYLLIKGWVPCLEFEVGPAHVYRENNKSPGYYDGRYWTMWKLPMFGCTDASQV 139
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS6_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.903e-28 Identity = 57/94 (60.64%), Postives = 73/94 (77.66%), Query Frame = 2 Query: 194 SNGVRFQCVKVWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQLEKGWVYREHHKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD 475 SNG R C++VWPP GLKKFETLSYLPPLS E L +E++YLLR+ W+PC+EF E G+VYRE+H +P YY+GRYWT K+ MFG +QV+ + Sbjct: 50 SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAE 142
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS5_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.903e-28 Identity = 57/94 (60.64%), Postives = 73/94 (77.66%), Query Frame = 2 Query: 194 SNGVRFQCVKVWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQLEKGWVYREHHKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD 475 SNG R C++VWPP GLKKFETLSYLPPLS E L +E++YLLR+ W+PC+EF E G+VYRE+H +P YY+GRYWT K+ MFG +QV+ + Sbjct: 50 SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAE 142
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS4_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.903e-28 Identity = 57/94 (60.64%), Postives = 73/94 (77.66%), Query Frame = 2 Query: 194 SNGVRFQCVKVWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQLEKGWVYREHHKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD 475 SNG R C++VWPP GLKKFETLSYLPPLS E L +E++YLLR+ W+PC+EF E G+VYRE+H +P YY+GRYWT K+ MFG +QV+ + Sbjct: 50 SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAE 142
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.903e-28 Identity = 59/104 (56.73%), Postives = 77/104 (74.04%), Query Frame = 2 Query: 164 RPTMTLLPFASNGVRFQCVKVWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQLEKGWVYREHHKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD 475 R T L SNG R +C++VWP G+KKFETLSYLPPLS E LL++++YL+RS W+PCLEF + G+V+REH+ +P YY+GRYWT K+ MFG TQVL + Sbjct: 30 RSGSTGLSSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNE 132
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS_AEGTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Aegilops tauschii GN=RBCS PE=2 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 3.247e-28 Identity = 55/94 (58.51%), Postives = 76/94 (80.85%), Query Frame = 2 Query: 194 SNGVRFQCVKVWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQLEKGWVYREHHKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD 475 SNG R +C++VWP G+KKFETLSYLPPLS E LL++++YL+RS W+PCLEF+ + G+++REH+ +P YY+GRYWT K+ MFG PTQV+ + Sbjct: 40 SNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEGLLKQVDYLIRSKWVPCLEFR-KVGFIFREHNVSPGYYDGRYWTMWKLPMFGCPAPTQVIPE 132
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS2_LEMGI (Ribulose bisphosphate carboxylase small chain SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 4.240e-28 Identity = 56/94 (59.57%), Postives = 73/94 (77.66%), Query Frame = 2 Query: 194 SNGVRFQCVKVWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQLEKGWVYREHHKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD 475 SNG + C++VWPP GLKKFETLSYLPPLS E L +E++YLLR+ W+PC+EF E G+VYRE+H +P YY+GRYWT K+ MFG +QV+ + Sbjct: 50 SNGGKVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAE 142
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS3_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40A, chloroplastic OS=Lemna gibba GN=SSU40A PE=3 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 5.538e-28 Identity = 56/93 (60.22%), Postives = 72/93 (77.42%), Query Frame = 2 Query: 197 NGVRFQCVKVWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQLEKGWVYREHHKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD 475 NG R C++VWPP GLKKFETLSYLPPLS E L +E++YLLR+ W+PC+EF E G+VYRE+H +P YY+GRYWT K+ MFG +QV+ + Sbjct: 51 NGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAE 142
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 7.232e-28 Identity = 55/94 (58.51%), Postives = 74/94 (78.72%), Query Frame = 2 Query: 194 SNGVRFQCVKVWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQLEKGWVYREHHKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD 475 SNG R +C++VWP G+KKFETLSYLPPLS E LL++++YL+RS W+PCLEF + G+++REH+ +P YY+GRYWT K+ MFG TQVL + Sbjct: 39 SNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVLNE 131 The following BLAST results are available for this feature:
BLAST of EY684888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 104
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Sequences
The
following sequences are available for this feature:
EST sequence >EY684888 ID=EY684888; Name=EY684888; organism=Citrus sinensis; type=EST; length=947bpback to top |