EY684888

Overview
NameEY684888
Unique NameEY684888
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length947
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. indica GN=RBCS PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 6.541e-29
Identity = 59/94 (62.77%), Postives = 75/94 (79.79%), Query Frame = 2
Query:  194 SNGVRFQCVKVWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQLEKGWVYREHHKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD 475
            SNG R +C++VWP  G+KKFETLSYLPPL+ E LL++I YLLRS W+PCLEF  + G+VYRE+H++P YY+GRYWT  K+ MFG    TQVLK+
Sbjct:   40 SNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKE 132          
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS_SILPR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Silene pratensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.116e-28
Identity = 57/101 (56.44%), Postives = 75/101 (74.26%), Query Frame = 2
Query:  164 RPTMTLLPFASNGVRFQCVKVWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQLEKGWVYREHHKTPRYYNGRYWTK*KMTMFGRHKPTQV 466
            +  + +   A+NG R  C++VWPP  LKKFETLSYLP LS+E+LL+EINYLL  GW+PCLEF++    VYRE++K+P YY+GRYWT  K+ MFG    +QV
Sbjct:   39 KSNVDITSLATNGGRVNCMQVWPPRNLKKFETLSYLPTLSEESLLKEINYLLIKGWVPCLEFEVGPAHVYRENNKSPGYYDGRYWTMWKLPMFGCTDASQV 139          
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS6_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.903e-28
Identity = 57/94 (60.64%), Postives = 73/94 (77.66%), Query Frame = 2
Query:  194 SNGVRFQCVKVWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQLEKGWVYREHHKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD 475
            SNG R  C++VWPP GLKKFETLSYLPPLS E L +E++YLLR+ W+PC+EF  E G+VYRE+H +P YY+GRYWT  K+ MFG    +QV+ +
Sbjct:   50 SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAE 142          
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS5_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.903e-28
Identity = 57/94 (60.64%), Postives = 73/94 (77.66%), Query Frame = 2
Query:  194 SNGVRFQCVKVWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQLEKGWVYREHHKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD 475
            SNG R  C++VWPP GLKKFETLSYLPPLS E L +E++YLLR+ W+PC+EF  E G+VYRE+H +P YY+GRYWT  K+ MFG    +QV+ +
Sbjct:   50 SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAE 142          
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS4_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.903e-28
Identity = 57/94 (60.64%), Postives = 73/94 (77.66%), Query Frame = 2
Query:  194 SNGVRFQCVKVWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQLEKGWVYREHHKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD 475
            SNG R  C++VWPP GLKKFETLSYLPPLS E L +E++YLLR+ W+PC+EF  E G+VYRE+H +P YY+GRYWT  K+ MFG    +QV+ +
Sbjct:   50 SNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAE 142          
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.903e-28
Identity = 59/104 (56.73%), Postives = 77/104 (74.04%), Query Frame = 2
Query:  164 RPTMTLLPFASNGVRFQCVKVWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQLEKGWVYREHHKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD 475
            R   T L   SNG R +C++VWP  G+KKFETLSYLPPLS E LL++++YL+RS W+PCLEF  + G+V+REH+ +P YY+GRYWT  K+ MFG    TQVL +
Sbjct:   30 RSGSTGLSSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNE 132          
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS_AEGTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Aegilops tauschii GN=RBCS PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.247e-28
Identity = 55/94 (58.51%), Postives = 76/94 (80.85%), Query Frame = 2
Query:  194 SNGVRFQCVKVWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQLEKGWVYREHHKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD 475
            SNG R +C++VWP  G+KKFETLSYLPPLS E LL++++YL+RS W+PCLEF+ + G+++REH+ +P YY+GRYWT  K+ MFG   PTQV+ +
Sbjct:   40 SNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEGLLKQVDYLIRSKWVPCLEFR-KVGFIFREHNVSPGYYDGRYWTMWKLPMFGCPAPTQVIPE 132          
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS2_LEMGI (Ribulose bisphosphate carboxylase small chain SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 4.240e-28
Identity = 56/94 (59.57%), Postives = 73/94 (77.66%), Query Frame = 2
Query:  194 SNGVRFQCVKVWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQLEKGWVYREHHKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD 475
            SNG +  C++VWPP GLKKFETLSYLPPLS E L +E++YLLR+ W+PC+EF  E G+VYRE+H +P YY+GRYWT  K+ MFG    +QV+ +
Sbjct:   50 SNGGKVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAE 142          
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS3_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40A, chloroplastic OS=Lemna gibba GN=SSU40A PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.538e-28
Identity = 56/93 (60.22%), Postives = 72/93 (77.42%), Query Frame = 2
Query:  197 NGVRFQCVKVWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQLEKGWVYREHHKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD 475
            NG R  C++VWPP GLKKFETLSYLPPLS E L +E++YLLR+ W+PC+EF  E G+VYRE+H +P YY+GRYWT  K+ MFG    +QV+ +
Sbjct:   51 NGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAE 142          
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 7.232e-28
Identity = 55/94 (58.51%), Postives = 74/94 (78.72%), Query Frame = 2
Query:  194 SNGVRFQCVKVWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQLEKGWVYREHHKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD 475
            SNG R +C++VWP  G+KKFETLSYLPPLS E LL++++YL+RS W+PCLEF  + G+++REH+ +P YY+GRYWT  K+ MFG    TQVL +
Sbjct:   39 SNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVLNE 131          
The following BLAST results are available for this feature:
BLAST of EY684888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
RBS1_ORYSI6.541e-2962.77Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_SILPR1.116e-2856.44Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS6_LEMGI1.903e-2860.64Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS5_LEMGI1.903e-2860.64Ribulose bisphosphate carboxylase small chain SSU5... [more]
RBS4_LEMGI1.903e-2860.64Ribulose bisphosphate carboxylase small chain SSU4... [more]
RBS2_WHEAT1.903e-2856.73Ribulose bisphosphate carboxylase small chain PW9,... [more]
RBS_AEGTA3.247e-2858.51Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_LEMGI4.240e-2859.57Ribulose bisphosphate carboxylase small chain SSU2... [more]
RBS3_LEMGI5.538e-2860.22Ribulose bisphosphate carboxylase small chain SSU4... [more]
RBS_HORVU7.232e-2858.51Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-004-H08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684888 ID=EY684888; Name=EY684888; organism=Citrus sinensis; type=EST; length=947bp
ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAACAAAAAAGA
AAAACAACAAAACCCAAAAGCCACCGCGGAGCGGCGCCTCTAAAGACACA
AGACATTATGAGACACCCCCTTCAACGGGCTCACCTCTTCTACTGCTTTC
CCTTGGACCAATAAGACCAACAATGACTTTACTTCCATTTGCAAGCAACG
GAGTAAGATTCCAATGCGTGAAGGTGTGGCCACCAACTGGCTTGAAGAAG
TTCGAGACTCTCTCATACCTCCCGCCGCTGTCCGATGAAACTTTGCTCAG
GGAAATCAATTACCTTCTCCGCTCCGGCTGGATTCCCTGCTTGGAATTCC
AGCTGGAGAAAGGATGGGTGTACCGTGAGCACCACAAGACACCAAGATAC
TACAATGGACGCTACTGGACAAAGTGAAAGATGACCATGTTTGGGCGCCA
CAAACCAACCCAGGTATTAAAAGACGATGCGGGAGGTCCCGAACGAAACA
TCCACATCTTTTCGACCGAACTATCTGACTTCACAACAACCCGTCCAGTG
CAGCGAATCACCCTCCAACTCCCGCAAACCCACCACACAAGCACACGACC
CGGACAAAACAGGGGGCAACCGAACCCCCGGAACAAATAGCACCAAAAAC
AACATAACAACCCCCCCGAACGCGTAGCTGCGCGCACCGAACAGCCACCA
ATCACCGATGAGAAACCGAAAAAAAGAAAAGCCTACCTCAATCCAAACAA
CCAATTCGTAAATGCCAACCACCCAAAAACAAAACGCAAAATACAACCAT
GCCACGCTACCACAGCCGCCACTTACACCCAAACAAGAAGGCCGAAACAC
GGACCCAAGCAGCAACGAACATGCCCCCGCCTTCCACACCACCCGCAGAC
CCCAGCAAGCGCACACGTAATCACGCCGTTACCGCAAACACCGCACG
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