EY684883

Overview
NameEY684883
Unique NameEY684883
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684883 vs. ExPASy Swiss-Prot
Match: RL36_MOUSE (60S ribosomal protein L36 OS=Mus musculus GN=Rpl36 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 3.842e-15
Identity = 41/80 (51.25%), Postives = 53/80 (66.25%), Query Frame = 3
Query:   96 VGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITDILKVGKDKRALKVEQRKVTPSHKTKNNRE 335
            VGLNKGH VTK    PR S R+ + +    FV+++IREV GFAPYERR  ++LKV K KRALK  +++V    + K  RE
Sbjct:    9 VGLNKGHKVTKNVSKPRHSRRRSRLTNHTKFVRDMIREVCGFAPYERRAMELLKVSKSKRALKFIKKRVGTHIRAKRKRE 88          
BLAST of EY684883 vs. ExPASy Swiss-Prot
Match: RL36X_HUMAN (Putative 60S ribosomal protein L36-like 1 OS=Homo sapiens PE=5 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.784e-12
Identity = 38/82 (46.34%), Postives = 51/82 (62.20%), Query Frame = 3
Query:   90 LFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITDILKVGKDKRALKVEQRKVTPSHKTKNNRE 335
            + VGLNKGH +TK    PR S   G+ +K    V+ +I+EV GF PYER   ++LKV KDK+ALK  +++V     TK  RE
Sbjct:    7 MVVGLNKGHKLTKNLSKPRHSRSLGRPTKHTKCVRGMIQEVCGFTPYERCTMELLKVSKDKQALKFIKKRVGTHIHTKRKRE 88          
BLAST of EY684883 vs. ExPASy Swiss-Prot
Match: RL36B_YEAST (60S ribosomal protein L36-B OS=Saccharomyces cerevisiae GN=RPL36B PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 2.331e-12
Identity = 33/73 (45.21%), Postives = 52/73 (71.23%), Query Frame = 3
Query:   84 TGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITDILKVGKDKRALKVEQRKV 302
            TG+ +GLNKG  VT+    P+ S +KG  S R  FV++L+RE+AG +PYERR+ D+++   +KRA KV ++++
Sbjct:    5 TGIAIGLNKGKKVTQMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNSGEKRARKVAKKRL 77          
BLAST of EY684883 vs. ExPASy Swiss-Prot
Match: RL36A_YEAST (60S ribosomal protein L36-A OS=Saccharomyces cerevisiae GN=RPL36A PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 3.044e-12
Identity = 33/73 (45.21%), Postives = 51/73 (69.86%), Query Frame = 3
Query:   84 TGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITDILKVGKDKRALKVEQRKV 302
            TG+ +GLNKG  VT     P+ S +KG  S R  FV++L+RE+AG +PYERR+ D+++   +KRA KV ++++
Sbjct:    5 TGIAIGLNKGKKVTSMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNSGEKRARKVAKKRL 77          
BLAST of EY684883 vs. ExPASy Swiss-Prot
Match: RL36_DICDI (60S ribosomal protein L36 OS=Dictyostelium discoideum GN=rpl36 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.781e-12
Identity = 34/84 (40.48%), Postives = 57/84 (67.86%), Query Frame = 3
Query:   84 TGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITDILKVGKDKRALKVEQRKVTPSHKTKNNRE 335
            +G+  G NKGH V K+ +    + +K   +KRV  ++++IRE++GF+PYERR++++LK G DKRALKV ++++      K  R+
Sbjct:   12 SGIIKGFNKGHAVAKRTVTS--TFKKQVVTKRVAAIRDVIREISGFSPYERRVSELLKSGLDKRALKVAKKRLGSIQAGKKKRD 93          
BLAST of EY684883 vs. ExPASy Swiss-Prot
Match: RL36_CANAL (60S ribosomal protein L36 OS=Candida albicans GN=RPL36 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.781e-12
Identity = 31/73 (42.47%), Postives = 54/73 (73.97%), Query Frame = 3
Query:   84 TGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVKNLIREVAGFAPYERRITDILKVGKDKRALKVEQRKV 302
            +G+  G+NKG   T KE+ P+ S RKG +S+R  FV+++++EVAG APYERR+ ++++   +KRA K+ ++++
Sbjct:    4 SGIAAGVNKGRKTTAKEVAPKISYRKGASSQRTVFVRSIVKEVAGLAPYERRLIELIRNAGEKRAKKLAKKRL 76          
The following BLAST results are available for this feature:
BLAST of EY684883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL36_MOUSE3.842e-1551.2560S ribosomal protein L36 OS=Mus musculus GN=Rpl36... [more]
RL36X_HUMAN1.784e-1246.34Putative 60S ribosomal protein L36-like 1 OS=Homo ... [more]
RL36B_YEAST2.331e-1245.2160S ribosomal protein L36-B OS=Saccharomyces cerev... [more]
RL36A_YEAST3.044e-1245.2160S ribosomal protein L36-A OS=Saccharomyces cerev... [more]
RL36_DICDI6.781e-1240.4860S ribosomal protein L36 OS=Dictyostelium discoid... [more]
RL36_CANAL6.781e-1242.4760S ribosomal protein L36 OS=Candida albicans GN=R... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-004-H02-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684883 ID=EY684883; Name=EY684883; organism=Citrus sinensis; type=EST; length=903bp
CCACGCGTCCGAGAAGAAGTATATATTCCCGGAAGATTGTAGTAGGAGCT
GTTTGGTAGGTGATGGCTCCAAAGCAGCCAAATACTGGCCTTTTTGTGGG
TCTAAACAAAGGACATGTCGTGACCAAGAAGGAGTTGCCTCCCCGCCCTT
CTGATAGAAAAGGCAAAACTAGTAAGAGAGTCCATTTTGTGAAGAACCTC
ATTAGGGAGGTTGCTGGTTTTGCTCCCTATGAAAGGAGGATTACTGACAT
TCTTAAAGTTGGGAAAGATAAGCGTGCTTTGAAGGTGGAACAAAGAAAGG
TGACGCCCTCACACAAAACCAAGAACAACCGCGAAGGAAATGTCAGAAGC
CTCAACAGCCATGACGTCAAATGCAGAGAGAACACGCACCAACAAACCCA
CCGGTGGGGGGGACGAGGAGGACGCGAACCACCACGGGACCAGGCCACAC
AGACGGGACCACGAAGGAAAACATAGACGCGACGAGAGACAACCGTCAAA
AACCCGCAAACTCATCACCGCACCCCCACCGAACCCCAAGCGCACAAACA
ACCCACGAGAACCAGGCCCACCAAACACAACACCGCGCTCCCCCCCACCG
CCCACAGGCAACACACCCCACGAGCCGCCAGAGCACGGACAAGGAAATAA
AAGAAGAAAACGCAAAAAACAAACCAGAACCGAACACAACCCGGGCGCGA
CACGACCTCACCGAACCCCGAACACCGTACCGGCACCAAGAGCAAACGGC
CCACCCCCAGAGGCGGAACCCCACACACCCAGACCGAAGAACCGCCAAAA
CCCAACAACACACGCGCCCGCCGCGCCAACCCAGCGCCGGCCACCCCCCA
CACACCAAAGAAAAAGACGCCCTAAGACTTGCACCAACACCCAACACCCA
ATC
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