EY684744

Overview
NameEY684744
Unique NameEY684744
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length875
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_PERMH (Imidazole glycerol phosphate synthase subunit hisF OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=hisF PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.121e-23
Identity = 60/106 (56.60%), Postives = 72/106 (67.92%), Query Frame = 1
Query:    1 REGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            R    I A E AKAVEDLGAGEILL  +D DG   G+D+ L + IS+AVSIPVIAS GAG  E F D F +  A AALAA +FH KE+ I  +KE L ++GI VR+
Sbjct:  147 RTATGIDAVEWAKAVEDLGAGEILLTSMDRDGTKNGYDIALTRAISEAVSIPVIASGGAGKKEDFYDAFTEGKADAALAASLFHFKELTIGELKEFLKEKGIPVRL 252          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_CLOBK (Imidazole glycerol phosphate synthase subunit hisF OS=Clostridium botulinum (strain Okra / Type B1) GN=hisF PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.061e-22
Identity = 52/101 (51.49%), Postives = 73/101 (72.28%), Query Frame = 1
Query:   16 IGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            + A E A+ VE LGAGEILL  +D DG  +G+D++L   +S AV+IPVIAS G G ++HF ++F K++A AALAA +FH KE+ I+ VK +L +EG  VR+
Sbjct:  153 LDAIEWARKVEKLGAGEILLTSMDADGTKEGYDLELTNEVSKAVNIPVIASGGCGKLKHFGEIFEKSSADAALAASLFHFKELSIKEVKNYLKEEGFSVRL 253          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_CLOBH (Imidazole glycerol phosphate synthase subunit hisF OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=hisF PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.061e-22
Identity = 52/101 (51.49%), Postives = 72/101 (71.29%), Query Frame = 1
Query:   16 IGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            + A E A+ VE LGAGEILL  +D DG  +G+D++    +S AV+IPVIAS G G ++HF ++F K++A AALAA +FH KE+ I+ VK +L KEG  VR+
Sbjct:  153 LDAIEWARKVEKLGAGEILLTSMDADGTKEGYDLEFTNEVSKAVNIPVIASGGCGKLKHFGEIFEKSSADAALAASLFHFKELSIKEVKNYLKKEGFSVRL 253          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_CLOB1 (Imidazole glycerol phosphate synthase subunit hisF OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=hisF PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.061e-22
Identity = 52/101 (51.49%), Postives = 72/101 (71.29%), Query Frame = 1
Query:   16 IGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            + A E A+ VE LGAGEILL  +D DG  +G+D++    +S AV+IPVIAS G G ++HF ++F K++A AALAA +FH KE+ I+ VK +L KEG  VR+
Sbjct:  153 LDAIEWARKVEKLGAGEILLTSMDADGTKEGYDLEFTNEVSKAVNIPVIASGGCGKLKHFGEIFEKSSADAALAASLFHFKELSIKEVKNYLKKEGFSVRL 253          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_SULSY (Imidazole glycerol phosphate synthase subunit hisF OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=hisF PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.385e-22
Identity = 55/101 (54.46%), Postives = 69/101 (68.32%), Query Frame = 1
Query:   16 IGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            I A E AKAVE LGAGEILL  +D DG   G+D++L K +S+AV IPVIAS GAG V+HF + F    A A LAA +FH KE+ I  +K +L  +GI VR+
Sbjct:  152 IDAIEWAKAVESLGAGEILLTSMDKDGTKSGYDIELTKAVSEAVKIPVIASGGAGNVQHFYEAFEYGKADACLAASLFHFKEIEISELKNYLKNKGINVRL 252          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_THEYD (Imidazole glycerol phosphate synthase subunit hisF OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=hisF PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.809e-22
Identity = 56/103 (54.37%), Postives = 71/103 (68.93%), Query Frame = 1
Query:   10 RPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            RPI A   AK +E+ GAGEILL  +D DG  +G+D++L + IS+AVSIPVIAS GAG +EH  + F    A AALAA IFH +E  I+  KE L ++GI VRI
Sbjct:  176 RPIDAIAWAKKMEEFGAGEILLTSMDRDGTKEGYDIELTRAISEAVSIPVIASGGAGTLEHLYEAFAYAKADAALAASIFHFREYSIREAKEFLRQKGIPVRI 278          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_SULSO (Imidazole glycerol phosphate synthase subunit hisF OS=Sulfolobus solfataricus GN=hisF PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.030e-22
Identity = 55/101 (54.46%), Postives = 73/101 (72.28%), Query Frame = 1
Query:   16 IGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            + A + AK VE+LGAGEILL  ID DG   G+D++L + I D+V+IPVIAS GAG +EHF +VF    A AALAAGIFH   + I+ +K +L ++GIEVR+
Sbjct:  151 LDAIKWAKKVEELGAGEILLTSIDRDGTRLGYDLELTRKIVDSVNIPVIASGGAGKMEHFYEVFSLAKADAALAAGIFHDGIIKIKDLKSYLSQKGIEVRM 251          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_NAUPA (Imidazole glycerol phosphate synthase subunit hisF OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=hisF PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.264e-22
Identity = 56/106 (52.83%), Postives = 73/106 (68.87%), Query Frame = 1
Query:    1 REGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            RE   + A E AK V D GAGEILL  +D DG   GFD+++ ++IS  V +PVIAS GAG +EHF +VF + +A AALAA IFH KE+ I  +K++L+K  I VRI
Sbjct:  149 REDTGLDAIEWAKEVVDRGAGEILLTSMDTDGTKAGFDIEITEIISKLVHVPVIASGGAGKMEHFKEVF-EHSADAALAASIFHFKEIDIMDLKQYLHKNNISVRI 253          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_THEON (Imidazole glycerol phosphate synthase subunit hisF OS=Thermococcus onnurineus (strain NA1) GN=hisF PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.875e-22
Identity = 58/106 (54.72%), Postives = 73/106 (68.87%), Query Frame = 1
Query:    1 REGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            R+ R I A E AK VE LGAGEILL  +D DG  +GFD+ L K I +AV IPVIAS GAG+ EHF + F K  A AALAA IFH  +  ++ +KE+L ++GI VR+
Sbjct:  146 RKARGINAVEWAKEVERLGAGEILLTSMDTDGTQEGFDIPLTKAIVEAVDIPVIASGGAGSPEHFYEAF-KIGAEAALAASIFHYGKYTVRELKEYLAEKGIPVRL 250          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_HYDS0 (Imidazole glycerol phosphate synthase subunit hisF OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=hisF PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.875e-22
Identity = 56/101 (55.45%), Postives = 69/101 (68.32%), Query Frame = 1
Query:   16 IGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            + A E AK VE LGAGEILL  ID DG   G+D+ L  LIS AV+IPVIAS GAG  EHF + F+ T ASA LAA IFH K++ I ++K +L +  + VRI
Sbjct:  152 LDAVEWAKQVESLGAGEILLTSIDKDGTKSGYDIKLTDLISKAVNIPVIASGGAGRKEHFLEAFKLTEASACLAASIFHFKKISIPALKAYLKENNVHVRI 252          
The following BLAST results are available for this feature:
BLAST of EY684744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HIS6_PERMH8.121e-2356.60Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_CLOBK1.061e-2251.49Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_CLOBH1.061e-2251.49Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_CLOB11.061e-2251.49Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_SULSY1.385e-2254.46Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_THEYD1.809e-2254.37Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_SULSO4.030e-2254.46Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_NAUPA5.264e-2252.83Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_THEON6.875e-2254.72Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_HYDS06.875e-2255.45Imidazole glycerol phosphate synthase subunit hisF... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-B03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684744 ID=EY684744; Name=EY684744; organism=Citrus sinensis; type=EST; length=875bp
CGAGAAGGTCGACCAATTGGAGCTTATGAGCTTGCCAAAGCAGTTGAAGA
TCTTGGAGCTGGAGAGATACTATTGAATTGCATTGACTGTGATGGTCAAG
GGAAAGGGTTTGATATGGATCTAATAAAGTTGATCTCAGATGCTGTGAGC
ATCCCTGTGATTGCAAGTAGTGGTGCAGGTGCTGTTGAGCACTTCTCTGA
TGTTTTTAGGAAAACAAATGCATCTGCTGCCCTTGCTGCTGGCATTTTCC
ATCGAAAGGAGGTCCCCATTCAGTCTGTAAAAGAGCATTTGTACAAGGAA
GGGATAGAAGTTAGGATCTAACTTGGTGAATTCTGGGTAAGTTGGGATTT
AATGGTTGGCATTTGAACTTGATGAATACACTTTGCTTCGGATGAAGAAT
GAGGTAGTGAAGACTACAAGTAAAGATGGGCTGCACACTCCTCAAAGTGG
CTTTCTTCTGCTGACTTCCAAGCATTCCATGGATGACGCCCCACTAGGAC
CCACACACCCACACCTGGACCCCTCGACCACAACCGAAGTCCCTCCCCGA
AAAACCCACAATACCCTAACCAAGACGCCCCACACTCGAAATCCGCGCAT
TACAGCCACTGGGAGTCAGCCCGGGACGACCGCGCCAACCGACACAAAAA
GAACCGCACTCTCCAACCCGCAACACACATCCCCACCATGAAACAGCGAA
GGCAGAACCAAACAAAACACCACACGAGGGGAGACAACAACACGAAGCAA
GGGCAAACCACACGAGTCATGAACAACACAAAACCCCACCCCCCGCCACG
CGACGAACACGCCAACAAAGAGGCACACGGAACACAACCACACGAGCACG
CCCCACCACGACCCCACACGCCCTA
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