EY684744

Overview
NameEY684744
Unique NameEY684744
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length875
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_METVS (Imidazole glycerol phosphate synthase subunit hisF OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=hisF PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.412e-21
Identity = 53/106 (50.00%), Postives = 68/106 (64.15%), Query Frame = 1
Query:    1 REGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            REG  I A   AK VE+LGAGEILL  +D DG   G+D+ L K IS++V +PVIAS G G+  H  +VF+  NA AAL A I H +E  +Q +K+ + K  I VRI
Sbjct:  167 REGTGIDAINWAKKVENLGAGEILLTSMDADGTKDGYDITLTKAISESVKLPVIASGGCGSSAHVVEVFKNGNADAALMASILHYRETDVQKIKKEVQKNNIPVRI 272          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_LISIN (Imidazole glycerol phosphate synthase subunit hisF OS=Listeria innocua GN=hisF PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.412e-21
Identity = 53/105 (50.48%), Postives = 70/105 (66.67%), Query Frame = 1
Query:    1 REGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVR 315
            R+   + A E AK    LGAGEILL  +D DG   G+D+ L K IS+AVS+PVIAS G G   H  +VF +TNA+AALAA IFH  E+ I++VK  L ++G+ +R
Sbjct:  146 RDDTGLDAIEWAKKATQLGAGEILLTSMDGDGTKNGYDIPLTKAISEAVSVPVIASGGCGNASHMVEVFEQTNATAALAASIFHYGELSIKNVKTTLLEKGVNIR 250          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_THEGJ (Imidazole glycerol phosphate synthase subunit hisF OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=hisF PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.456e-21
Identity = 57/106 (53.77%), Postives = 69/106 (65.09%), Query Frame = 1
Query:    1 REGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            R+ R I A E A+ VE LGAGEILL  +D DG   GFD+ L K +++AV IPVIAS GAG  EHF + F K  A AALAA IFH  E  +  +KE L + GI VR+
Sbjct:  146 RKARGIDALEWARTVERLGAGEILLTSMDTDGTKMGFDIPLTKAVAEAVDIPVIASGGAGRPEHFYEAF-KAGAEAALAASIFHYGEYTVGELKEFLAERGIPVRL 250          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_METS5 (Imidazole glycerol phosphate synthase subunit hisF OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=hisF PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.820e-21
Identity = 52/100 (52.00%), Postives = 68/100 (68.00%), Query Frame = 1
Query:   16 IGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVR 315
            + A + AK VE++GAGEILL  ID DG   G+D++L K +  A  +PVIAS GAG  +HF  VFR+  A AALAAGIFH   + I+ +K++L   GIEVR
Sbjct:  151 LDAVDWAKRVEEMGAGEILLTSIDRDGTRDGYDLELTKAVVRATKVPVIASGGAGKPDHFLSVFRQAGADAALAAGIFHDGVIRIRELKDYLKDAGIEVR 250          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_GEOUR (Imidazole glycerol phosphate synthase subunit hisF OS=Geobacter uraniireducens (strain Rf4) GN=hisF PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.601e-21
Identity = 54/106 (50.94%), Postives = 68/106 (64.15%), Query Frame = 1
Query:    1 REGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            R    I A E A+ +E  G+GEILL  +D DG   G+D+ L + ++DAVSIPVIAS G G +EH  D F K  ASA LAA IFH +E  IQ  KE+L + G+ VRI
Sbjct:  148 RNATGIDAVEWAQRMEAYGSGEILLTSMDRDGTKDGYDLPLTRAVADAVSIPVIASGGVGNLEHLYDGFTKGGASACLAASIFHYREYTIQEAKEYLRERGVPVRI 253          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_CLOPH (Imidazole glycerol phosphate synthase subunit hisF OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=hisF PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.296e-20
Identity = 51/101 (50.50%), Postives = 66/101 (65.35%), Query Frame = 1
Query:   16 IGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            I A E A    +LGAGEILL  +DCDG   G+D++L K IS+ VSIPVIAS GAG  EHF +   +  A A LAA +FH KE+ I  +KE+L  + + VR+
Sbjct:  153 IDAVEWAMKANELGAGEILLTSMDCDGTKNGYDLELTKQISENVSIPVIASGGAGTKEHFYEALTRGKADAVLAASLFHYKELEINDLKEYLRMKEVSVRL 253          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_BACP2 (Imidazole glycerol phosphate synthase subunit hisF OS=Bacillus pumilus (strain SAFR-032) GN=hisF PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.296e-20
Identity = 54/105 (51.43%), Postives = 67/105 (63.81%), Query Frame = 1
Query:    1 REGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVR 315
            R    I   + AK     GAGEILL  +D DG+ KGFD  L KL+S+AV++PVIAS GAG  +H  + F K  A AALAA IFH KE  IQ VK +L + G++VR
Sbjct:  148 RRQTDIEVSDWAKEAVLRGAGEILLTSMDADGEKKGFDHRLTKLVSEAVTVPVIASGGAGNAQHMLEAFTKGEADAALAASIFHYKETSIQEVKTYLKEHGVKVR 252          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_ANOFW (Imidazole glycerol phosphate synthase subunit hisF OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=hisF PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.296e-20
Identity = 50/94 (53.19%), Postives = 65/94 (69.15%), Query Frame = 1
Query:   34 AKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVR 315
            AK     GAGEILL  +D DG   GFD+ L K +S+AVS+PVIAS GAG  +HF DVF+   A AALAA IFH +E  +Q VK+++ ++G+ VR
Sbjct:  159 AKEAVKRGAGEILLTSMDRDGGKDGFDLALTKRVSEAVSVPVIASGGAGCAQHFVDVFQTAQADAALAASIFHYQETSVQQVKQYVREQGVNVR 252          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_LISMO (Imidazole glycerol phosphate synthase subunit hisF OS=Listeria monocytogenes GN=hisF PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.693e-20
Identity = 53/105 (50.48%), Postives = 68/105 (64.76%), Query Frame = 1
Query:    1 REGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVR 315
            R    + A E AK    LGAGEILL  +D DG   G+D+ L K IS+AVS+PVIAS G G   H  +VF KT A+AALAA IFH  E+ I++VK  L ++G+ +R
Sbjct:  146 RNDTGLDAIEWAKKAVQLGAGEILLTSMDGDGTKNGYDIPLTKAISEAVSVPVIASGGCGNAAHMVEVFEKTKATAALAASIFHYGELSIKNVKTTLLEKGVNIR 250          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_GEOSL (Imidazole glycerol phosphate synthase subunit hisF OS=Geobacter sulfurreducens GN=hisF PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.693e-20
Identity = 54/101 (53.47%), Postives = 66/101 (65.35%), Query Frame = 1
Query:   16 IGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            I A E A+ +E+ GAGEILL  +D DG   G+D+ L + I DAVSIPVIAS G G +EH  D F K  ASA LAA IFH KE  I   KE+L + G+ VR+
Sbjct:  153 IDAVEWARRMEEYGAGEILLTSMDRDGTKDGYDIPLTRAIVDAVSIPVIASGGVGNLEHLYDGFVKAGASACLAASIFHYKEYTIGEAKEYLRQRGVPVRL 253          
The following BLAST results are available for this feature:
BLAST of EY684744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HIS6_METVS3.412e-2150.00Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_LISIN3.412e-2150.48Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_THEGJ4.456e-2153.77Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_METS55.820e-2152.00Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_GEOUR7.601e-2150.94Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_CLOPH1.296e-2050.50Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_BACP21.296e-2051.43Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_ANOFW1.296e-2053.19Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_LISMO1.693e-2050.48Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_GEOSL1.693e-2053.47Imidazole glycerol phosphate synthase subunit hisF... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-B03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684744 ID=EY684744; Name=EY684744; organism=Citrus sinensis; type=EST; length=875bp
CGAGAAGGTCGACCAATTGGAGCTTATGAGCTTGCCAAAGCAGTTGAAGA
TCTTGGAGCTGGAGAGATACTATTGAATTGCATTGACTGTGATGGTCAAG
GGAAAGGGTTTGATATGGATCTAATAAAGTTGATCTCAGATGCTGTGAGC
ATCCCTGTGATTGCAAGTAGTGGTGCAGGTGCTGTTGAGCACTTCTCTGA
TGTTTTTAGGAAAACAAATGCATCTGCTGCCCTTGCTGCTGGCATTTTCC
ATCGAAAGGAGGTCCCCATTCAGTCTGTAAAAGAGCATTTGTACAAGGAA
GGGATAGAAGTTAGGATCTAACTTGGTGAATTCTGGGTAAGTTGGGATTT
AATGGTTGGCATTTGAACTTGATGAATACACTTTGCTTCGGATGAAGAAT
GAGGTAGTGAAGACTACAAGTAAAGATGGGCTGCACACTCCTCAAAGTGG
CTTTCTTCTGCTGACTTCCAAGCATTCCATGGATGACGCCCCACTAGGAC
CCACACACCCACACCTGGACCCCTCGACCACAACCGAAGTCCCTCCCCGA
AAAACCCACAATACCCTAACCAAGACGCCCCACACTCGAAATCCGCGCAT
TACAGCCACTGGGAGTCAGCCCGGGACGACCGCGCCAACCGACACAAAAA
GAACCGCACTCTCCAACCCGCAACACACATCCCCACCATGAAACAGCGAA
GGCAGAACCAAACAAAACACCACACGAGGGGAGACAACAACACGAAGCAA
GGGCAAACCACACGAGTCATGAACAACACAAAACCCCACCCCCCGCCACG
CGACGAACACGCCAACAAAGAGGCACACGGAACACAACCACACGAGCACG
CCCCACCACGACCCCACACGCCCTA
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