EY684744

Overview
NameEY684744
Unique NameEY684744
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length875
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_ECO8A (Imidazole glycerol phosphate synthase subunit hisF OS=Escherichia coli O8 (strain IAI1) GN=hisF PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.305e-16
Identity = 38/92 (41.30%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:   43 VEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            V+  GAGEI+LN ++ DG   G+D++ +K + +   +P+IAS GAG +EHF + FR  +   ALAA +FH++ + I  +K +L  +G+E+RI
Sbjct:  166 VQKRGAGEIVLNMMNQDGVRNGYDLEQLKKVREVCHVPLIASGGAGTMEHFLEAFRDADVDGALAASVFHKQIINIGELKAYLATQGVEIRI 257
[Close]
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_ECO81 (Imidazole glycerol phosphate synthase subunit hisF OS=Escherichia coli O81 (strain ED1a) GN=hisF PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.305e-16
Identity = 38/92 (41.30%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:   43 VEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            V+  GAGEI+LN ++ DG   G+D++ +K + +   +P+IAS GAG +EHF + FR  +   ALAA +FH++ + I  +K +L  +G+E+RI
Sbjct:  166 VQKRGAGEIVLNMMNQDGVRNGYDLEQLKKVREVCHVPLIASGGAGTMEHFLEAFRDADVDGALAASVFHKQIINIGELKAYLATQGVEIRI 257
[Close]
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_ECO5E (Imidazole glycerol phosphate synthase subunit hisF OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=hisF PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.305e-16
Identity = 38/92 (41.30%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:   43 VEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            V+  GAGEI+LN ++ DG   G+D++ +K + +   +P+IAS GAG +EHF + FR  +   ALAA +FH++ + I  +K +L  +G+E+RI
Sbjct:  166 VQKRGAGEIVLNMMNQDGVRNGYDLEQLKKVREVCHVPLIASGGAGTMEHFLEAFRDADVDGALAASVFHKQIINIGELKAYLATQGVEIRI 257
[Close]
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_ECO57 (Imidazole glycerol phosphate synthase subunit hisF OS=Escherichia coli O157:H7 GN=hisF PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.305e-16
Identity = 38/92 (41.30%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:   43 VEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            V+  GAGEI+LN ++ DG   G+D++ +K + +   +P+IAS GAG +EHF + FR  +   ALAA +FH++ + I  +K +L  +G+E+RI
Sbjct:  166 VQKRGAGEIVLNMMNQDGVRNGYDLEQLKKVREVCHVPLIASGGAGTMEHFLEAFRDADVDGALAASVFHKQIINIGELKAYLATQGVEIRI 257
[Close]
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_ECO55 (Imidazole glycerol phosphate synthase subunit hisF OS=Escherichia coli (strain 55989 / EAEC) GN=hisF PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.305e-16
Identity = 38/92 (41.30%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:   43 VEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            V+  GAGEI+LN ++ DG   G+D++ +K + +   +P+IAS GAG +EHF + FR  +   ALAA +FH++ + I  +K +L  +G+E+RI
Sbjct:  166 VQKRGAGEIVLNMMNQDGVRNGYDLEQLKKVREVCHVPLIASGGAGTMEHFLEAFRDADVDGALAASVFHKQIINIGELKAYLATQGVEIRI 257
[Close]
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_ECO27 (Imidazole glycerol phosphate synthase subunit hisF OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=hisF PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.305e-16
Identity = 38/92 (41.30%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:   43 VEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            V+  GAGEI+LN ++ DG   G+D++ +K + +   +P+IAS GAG +EHF + FR  +   ALAA +FH++ + I  +K +L  +G+E+RI
Sbjct:  166 VQKRGAGEIVLNMMNQDGVRNGYDLEQLKKVREVCHVPLIASGGAGTMEHFLEAFRDADVDGALAASVFHKQIINIGELKAYLATQGVEIRI 257
[Close]
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_ECO24 (Imidazole glycerol phosphate synthase subunit hisF OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=hisF PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.305e-16
Identity = 38/92 (41.30%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:   43 VEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            V+  GAGEI+LN ++ DG   G+D++ +K + +   +P+IAS GAG +EHF + FR  +   ALAA +FH++ + I  +K +L  +G+E+RI
Sbjct:  166 VQKRGAGEIVLNMMNQDGVRNGYDLEQLKKVREVCHVPLIASGGAGTMEHFLEAFRDADVDGALAASVFHKQIINIGELKAYLATQGVEIRI 257
[Close]
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_CAMHC (Imidazole glycerol phosphate synthase subunit hisF OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=hisF PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.305e-16
Identity = 48/101 (47.52%), Postives = 61/101 (60.40%), Query Frame = 1 
Query:   16 IGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            I  +  +K VE+ G GEILL  +D DG   GFD  L   +S ++ IPVIAS GAG +EH  D F    A AALAA IFH  E+ I  +K +L  + IEVR+
Sbjct:  153 IDVFSWSKEVENRGCGEILLTSMDRDGTKSGFDNYLTGKVSKSLGIPVIASGGAGCMEHIRDTF-LAGADAALAASIFHFGEIKIDDLKRYLRTQNIEVRL 252
[Close]
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_BORPE (Imidazole glycerol phosphate synthase subunit hisF OS=Bordetella pertussis GN=hisF PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.305e-16
Identity = 44/106 (41.51%), Postives = 65/106 (61.32%), Query Frame = 1 
Query:    1 REGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            R+   + A   A+ +   GAGEILL  +D DG   GFD++L + +SDAV +PVIAS G G ++H +D      ASA LAA IFH  +  ++  K+++ + GI VR+
Sbjct:  163 RKATGLDAVAWARRMAAYGAGEILLTSMDRDGTKSGFDLELTRAVSDAVPVPVIASGGVGNLQHLADGVTTGRASAVLAASIFHFGQHTVRECKQYMAERGIAVRL 268
[Close]
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_BORPA (Imidazole glycerol phosphate synthase subunit hisF OS=Bordetella parapertussis GN=hisF PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.305e-16
Identity = 44/106 (41.51%), Postives = 65/106 (61.32%), Query Frame = 1 
Query:    1 REGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            R+   + A   A+ +   GAGEILL  +D DG   GFD++L + +SDAV +PVIAS G G ++H +D      ASA LAA IFH  +  ++  K+++ + GI VR+
Sbjct:  163 RKATGLDAVAWARRMAAYGAGEILLTSMDRDGTKSGFDLELTRAVSDAVPVPVIASGGVGNLQHLADGVTTGRASAVLAASIFHFGQHTVRECKQYMAERGIAVRL 268
The following BLAST results are available for this feature:
BLAST of EY684744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HIS6_ECO8A3.305e-1641.30Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_ECO813.305e-1641.30Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_ECO5E3.305e-1641.30Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_ECO573.305e-1641.30Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_ECO553.305e-1641.30Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_ECO273.305e-1641.30Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_ECO243.305e-1641.30Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_CAMHC3.305e-1647.52Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_BORPE3.305e-1641.51Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_BORPA3.305e-1641.51Imidazole glycerol phosphate synthase subunit hisF... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-B03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684744 ID=EY684744; Name=EY684744; organism=Citrus sinensis; type=EST; length=875bp
CGAGAAGGTCGACCAATTGGAGCTTATGAGCTTGCCAAAGCAGTTGAAGA
TCTTGGAGCTGGAGAGATACTATTGAATTGCATTGACTGTGATGGTCAAG
GGAAAGGGTTTGATATGGATCTAATAAAGTTGATCTCAGATGCTGTGAGC
ATCCCTGTGATTGCAAGTAGTGGTGCAGGTGCTGTTGAGCACTTCTCTGA
TGTTTTTAGGAAAACAAATGCATCTGCTGCCCTTGCTGCTGGCATTTTCC
ATCGAAAGGAGGTCCCCATTCAGTCTGTAAAAGAGCATTTGTACAAGGAA
GGGATAGAAGTTAGGATCTAACTTGGTGAATTCTGGGTAAGTTGGGATTT
AATGGTTGGCATTTGAACTTGATGAATACACTTTGCTTCGGATGAAGAAT
GAGGTAGTGAAGACTACAAGTAAAGATGGGCTGCACACTCCTCAAAGTGG
CTTTCTTCTGCTGACTTCCAAGCATTCCATGGATGACGCCCCACTAGGAC
CCACACACCCACACCTGGACCCCTCGACCACAACCGAAGTCCCTCCCCGA
AAAACCCACAATACCCTAACCAAGACGCCCCACACTCGAAATCCGCGCAT
TACAGCCACTGGGAGTCAGCCCGGGACGACCGCGCCAACCGACACAAAAA
GAACCGCACTCTCCAACCCGCAACACACATCCCCACCATGAAACAGCGAA
GGCAGAACCAAACAAAACACCACACGAGGGGAGACAACAACACGAAGCAA
GGGCAAACCACACGAGTCATGAACAACACAAAACCCCACCCCCCGCCACG
CGACGAACACGCCAACAAAGAGGCACACGGAACACAACCACACGAGCACG
CCCCACCACGACCCCACACGCCCTA
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