EY684744

Overview
NameEY684744
Unique NameEY684744
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length875
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_BORBR (Imidazole glycerol phosphate synthase subunit hisF OS=Bordetella bronchiseptica GN=hisF PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.305e-16
Identity = 44/106 (41.51%), Postives = 65/106 (61.32%), Query Frame = 1
Query:    1 REGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            R+   + A   A+ +   GAGEILL  +D DG   GFD++L + +SDAV +PVIAS G G ++H +D      ASA LAA IFH  +  ++  K+++ + GI VR+
Sbjct:  163 RKATGLDAVAWARRMAAYGAGEILLTSMDRDGTKSGFDLELTRAVSDAVPVPVIASGGVGNLQHLADGVTTGRASAVLAASIFHFGQHTVRECKQYMAERGIAVRL 268          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_TERTT (Imidazole glycerol phosphate synthase subunit hisF OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=hisF PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.316e-16
Identity = 46/101 (45.54%), Postives = 61/101 (60.40%), Query Frame = 1
Query:   16 IGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            I A E A  + + GAGEILL  +D DG   GFD+ + + IS+AV +PVIAS G G ++H  D   K  A A LAA IFH  E  +   K ++ + GIEVR+
Sbjct:  157 IDAVEWAVRMTEYGAGEILLTSMDRDGTKDGFDLGVTRAISEAVRVPVIASGGVGNLQHLVDGVIKGGADAVLAASIFHFGEYTVPEAKAYMEQHGIEVRL 257          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_SHIBS (Imidazole glycerol phosphate synthase subunit hisF OS=Shigella boydii serotype 4 (strain Sb227) GN=hisF PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.316e-16
Identity = 37/92 (40.22%), Postives = 62/92 (67.39%), Query Frame = 1
Query:   43 VEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            V+  GAGE++LN ++ DG   G+D++ +K + +   +P+IAS GAG +EHF + FR  +   ALAA +FH++ + I  +K +L  +G+E+RI
Sbjct:  166 VQKRGAGEVVLNMMNQDGVRNGYDLEQLKKVREVCHVPLIASGGAGTMEHFLEAFRDADVDGALAASVFHKQIINIGELKAYLATQGVEIRI 257          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_SALPC (Imidazole glycerol phosphate synthase subunit hisF OS=Salmonella paratyphi C (strain RKS4594) GN=hisF PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.316e-16
Identity = 39/92 (42.39%), Postives = 60/92 (65.22%), Query Frame = 1
Query:   43 VEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            V+  GAGEI LN ++ DG   G+D+  +K + D   +P+IAS GAG +EHF + FR  +   ALAA +FH++ + I  +K +L  +G+E+RI
Sbjct:  166 VQQRGAGEIALNMMNQDGVRNGYDLTQLKKVRDVCRVPLIASGGAGTMEHFLEAFRDADVDGALAASVFHKQIINIGELKAYLAGQGVEIRI 257          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_RALEH (Imidazole glycerol phosphate synthase subunit hisF OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=hisF PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.316e-16
Identity = 45/106 (42.45%), Postives = 63/106 (59.43%), Query Frame = 1
Query:    1 REGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            R+   + A E A+ +   GAGEILL  +D DG   GFD++L + +SDAV +PVIAS G G ++  +D   +  A A LAA IFH  +  +   K  + +EGI VRI
Sbjct:  151 RKATGLDAVEWAREMAARGAGEILLTSMDRDGTKSGFDLELTRAVSDAVPVPVIASGGVGGLQDLADGITRGRADAVLAASIFHYGQHTVGEAKAFMAREGIPVRI 256          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_PSEAB (Imidazole glycerol phosphate synthase subunit hisF OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=hisF PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.316e-16
Identity = 45/94 (47.87%), Postives = 59/94 (62.77%), Query Frame = 1
Query:   34 AKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVR 315
            AK +EDLGAGEILL  +D DG   G+D+ + + IS+AV++PVIAS G G +EH +    +  A A LAA IFH  E  +   K +L   GI VR
Sbjct:  163 AKKMEDLGAGEILLTSMDQDGVKSGYDLGVTRAISEAVNVPVIASGGVGNLEHLAAGILEGKADAVLAASIFHFGEYTVPEAKAYLASRGIVVR 256          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_PSEA8 (Imidazole glycerol phosphate synthase subunit hisF OS=Pseudomonas aeruginosa (strain LESB58) GN=hisF PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.316e-16
Identity = 45/94 (47.87%), Postives = 59/94 (62.77%), Query Frame = 1
Query:   34 AKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVR 315
            AK +EDLGAGEILL  +D DG   G+D+ + + IS+AV++PVIAS G G +EH +    +  A A LAA IFH  E  +   K +L   GI VR
Sbjct:  163 AKKMEDLGAGEILLTSMDQDGVKSGYDLGVTRAISEAVNVPVIASGGVGNLEHLAAGILEGKADAVLAASIFHFGEYTVPEAKAYLASRGIVVR 256          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_PSEA7 (Imidazole glycerol phosphate synthase subunit hisF OS=Pseudomonas aeruginosa (strain PA7) GN=hisF PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.316e-16
Identity = 45/94 (47.87%), Postives = 59/94 (62.77%), Query Frame = 1
Query:   34 AKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVR 315
            AK +EDLGAGEILL  +D DG   G+D+ + + IS+AV++PVIAS G G +EH +    +  A A LAA IFH  E  +   K +L   GI VR
Sbjct:  163 AKKMEDLGAGEILLTSMDQDGVKSGYDLGVTRAISEAVNVPVIASGGVGNLEHLAAGILEGKADAVLAASIFHFGEYTVPEAKAYLASRGIVVR 256          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_METFK (Imidazole glycerol phosphate synthase subunit hisF OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=hisF PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.316e-16
Identity = 42/101 (41.58%), Postives = 65/101 (64.36%), Query Frame = 1
Query:   16 IGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            + A + A+ + +LGAGE+L+  +D DG   GF++ L + IS+AV +P+IAS G G + H  +  R+  A A LAA IFH  E  ++  KE++  +GIEVR+
Sbjct:  152 LNAVDWARKMVELGAGELLVTSMDRDGTKMGFNLPLNRAISEAVDVPIIASGGVGNLVHLVEGVREGGADAVLAASIFHYGEYTVRQAKEYMRDQGIEVRL 252          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_MAGSM (Imidazole glycerol phosphate synthase subunit hisF OS=Magnetococcus sp. (strain MC-1) GN=hisF PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.316e-16
Identity = 47/106 (44.34%), Postives = 63/106 (59.43%), Query Frame = 1
Query:    1 REGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            R+   I A E A  +E  G+GEILL  +D DG   G+ +++ + ISDAV+IPVIAS G G  +H  +  R+  A A LAA IFH +E  I  VK +L    I VR+
Sbjct:  153 RQPTGIDALEWAHRMESFGSGEILLTSMDKDGTKSGYALEMTRAISDAVTIPVIASGGVGEPKHLLEGLRQGGADAVLAASIFHFREYTIPQVKRYLRDNHIAVRL 258          
The following BLAST results are available for this feature:
BLAST of EY684744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HIS6_BORBR3.305e-1641.51Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_TERTT4.316e-1645.54Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_SHIBS4.316e-1640.22Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_SALPC4.316e-1642.39Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_RALEH4.316e-1642.45Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_PSEAB4.316e-1647.87Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_PSEA84.316e-1647.87Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_PSEA74.316e-1647.87Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_METFK4.316e-1641.58Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_MAGSM4.316e-1644.34Imidazole glycerol phosphate synthase subunit hisF... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-B03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684744 ID=EY684744; Name=EY684744; organism=Citrus sinensis; type=EST; length=875bp
CGAGAAGGTCGACCAATTGGAGCTTATGAGCTTGCCAAAGCAGTTGAAGA
TCTTGGAGCTGGAGAGATACTATTGAATTGCATTGACTGTGATGGTCAAG
GGAAAGGGTTTGATATGGATCTAATAAAGTTGATCTCAGATGCTGTGAGC
ATCCCTGTGATTGCAAGTAGTGGTGCAGGTGCTGTTGAGCACTTCTCTGA
TGTTTTTAGGAAAACAAATGCATCTGCTGCCCTTGCTGCTGGCATTTTCC
ATCGAAAGGAGGTCCCCATTCAGTCTGTAAAAGAGCATTTGTACAAGGAA
GGGATAGAAGTTAGGATCTAACTTGGTGAATTCTGGGTAAGTTGGGATTT
AATGGTTGGCATTTGAACTTGATGAATACACTTTGCTTCGGATGAAGAAT
GAGGTAGTGAAGACTACAAGTAAAGATGGGCTGCACACTCCTCAAAGTGG
CTTTCTTCTGCTGACTTCCAAGCATTCCATGGATGACGCCCCACTAGGAC
CCACACACCCACACCTGGACCCCTCGACCACAACCGAAGTCCCTCCCCGA
AAAACCCACAATACCCTAACCAAGACGCCCCACACTCGAAATCCGCGCAT
TACAGCCACTGGGAGTCAGCCCGGGACGACCGCGCCAACCGACACAAAAA
GAACCGCACTCTCCAACCCGCAACACACATCCCCACCATGAAACAGCGAA
GGCAGAACCAAACAAAACACCACACGAGGGGAGACAACAACACGAAGCAA
GGGCAAACCACACGAGTCATGAACAACACAAAACCCCACCCCCCGCCACG
CGACGAACACGCCAACAAAGAGGCACACGGAACACAACCACACGAGCACG
CCCCACCACGACCCCACACGCCCTA
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