EY684744

Overview
NameEY684744
Unique NameEY684744
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length875
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_ECOL6 (Imidazole glycerol phosphate synthase subunit hisF OS=Escherichia coli O6 GN=hisF PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.362e-16
Identity = 38/92 (41.30%), Postives = 61/92 (66.30%), Query Frame = 1
Query:   43 VEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            V+  GAGEI+LN ++ DG   G+D+  +K + +   +P+IAS GAG +EHF + FR  +   ALAA +FH++ + I  +K +L  +G+E+RI
Sbjct:  166 VQKRGAGEIVLNMMNQDGVRNGYDLKQLKKVREVCHVPLIASGGAGTMEHFLEAFRDADVDGALAASVFHKQIINIGELKAYLATQGVEIRI 257          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_ECOL5 (Imidazole glycerol phosphate synthase subunit hisF OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=hisF PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.362e-16
Identity = 38/92 (41.30%), Postives = 61/92 (66.30%), Query Frame = 1
Query:   43 VEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            V+  GAGEI+LN ++ DG   G+D+  +K + +   +P+IAS GAG +EHF + FR  +   ALAA +FH++ + I  +K +L  +G+E+RI
Sbjct:  166 VQKRGAGEIVLNMMNQDGVRNGYDLKQLKKVREVCHVPLIASGGAGTMEHFLEAFRDADVDGALAASVFHKQIINIGELKAYLATQGVEIRI 257          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_CUPTR (Imidazole glycerol phosphate synthase subunit hisF OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=hisF PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.362e-16
Identity = 44/106 (41.51%), Postives = 63/106 (59.43%), Query Frame = 1
Query:    1 REGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            R+   + A + A+ +   GAGEILL  +D DG   GFD++L + +SDAV +PVIAS G G ++  +D   +  A A LAA IFH  +  +   K  + +EGI VRI
Sbjct:  151 RKATGLDAVQWAREMATRGAGEILLTSMDRDGTKSGFDLELTRAVSDAVPVPVIASGGVGGLQDLADGITRGRADAVLAASIFHYGQHTVGEAKAFMAREGIPVRI 256          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_BIFLO (Imidazole glycerol phosphate synthase subunit hisF OS=Bifidobacterium longum GN=hisF PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.362e-16
Identity = 48/105 (45.71%), Postives = 60/105 (57.14%), Query Frame = 1
Query:    1 REGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVR 315
            R+   I A    K  E LGAGEILLN +D DG  +GFD+++I+ +   V IP+IAS GAG VE F     +  A A LAA +FH   + I  VK  L K G  VR
Sbjct:  153 RKSTGIDAIWWVKRAEQLGAGEILLNSMDADGTKEGFDLEMIRAVRKEVKIPIIASGGAGKVEDFPPAI-EAGADAVLAASVFHYGILTIADVKAELKKHGYTVR 256          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_BIFLI (Imidazole glycerol phosphate synthase subunit hisF OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=hisF PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.362e-16
Identity = 48/105 (45.71%), Postives = 60/105 (57.14%), Query Frame = 1
Query:    1 REGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVR 315
            R+   I A    K  E LGAGEILLN +D DG  +GFD+++I+ +   V IP+IAS GAG VE F     +  A A LAA +FH   + I  VK  L K G  VR
Sbjct:  153 RKSTGIDAIWWVKRAEQLGAGEILLNSMDADGTKEGFDLEMIRAVRKEVKIPIIASGGAGKVEDFPPAI-EAGADAVLAASVFHYGILTIADVKAELKKHGYTVR 256          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_BIFLD (Imidazole glycerol phosphate synthase subunit hisF OS=Bifidobacterium longum (strain DJO10A) GN=hisF PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.362e-16
Identity = 48/105 (45.71%), Postives = 60/105 (57.14%), Query Frame = 1
Query:    1 REGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVR 315
            R+   I A    K  E LGAGEILLN +D DG  +GFD+++I+ +   V IP+IAS GAG VE F     +  A A LAA +FH   + I  VK  L K G  VR
Sbjct:  153 RKSTGIDAIWWVKRAEQLGAGEILLNSMDADGTKEGFDLEMIRAVRKEVKIPIIASGGAGKVEDFPPAI-EAGADAVLAASVFHYGILTIADVKAELKKHGYTVR 256          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_AZOBR (Imidazole glycerol phosphate synthase subunit hisF OS=Azospirillum brasilense GN=hisF PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.362e-16
Identity = 47/105 (44.76%), Postives = 62/105 (59.05%), Query Frame = 1
Query:    1 REGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVR 315
            R+   I A E AK +E  GAGEILL  +D DG   GFD+ L + ++D + IPVIAS G G ++H  +  R+ +A+A LAA IFH     I   K  L + GI VR
Sbjct:  147 RKATGIDAIEWAKRMESYGAGEILLTSMDRDGTKSGFDLALTRKVADGLRIPVIASGGVGTLDHLVEGIREGHATAVLAASIFHFGTYTIGQAKAALAEAGIPVR 251          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_AKKM8 (Imidazole glycerol phosphate synthase subunit hisF OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=hisF PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.362e-16
Identity = 46/100 (46.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:   16 IGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVR 315
            + A E A   E  GAGEILL  +D DG   G+D++L + +S AV IPVIAS GAG ++H  DV  +  A A LAA IFH  E  +   K +    GI VR
Sbjct:  152 LDAVEWAVEAERRGAGEILLTSMDADGAKTGYDIELTRAVSSAVRIPVIASGGAGNLDHMVDVLVEGKADAVLAASIFHFGEYTVPEAKAYFASRGIPVR 251          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_ACIAC (Imidazole glycerol phosphate synthase subunit hisF OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=hisF PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.362e-16
Identity = 45/106 (42.45%), Postives = 62/106 (58.49%), Query Frame = 1
Query:    1 REGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            R+   + A + A  +   GAGEILL  +D DG   GFD+ L + +SDAVS+PVIAS G G ++  +D  ++  A A LAA IFH  E  +   KE +   GI VR+
Sbjct:  161 RKNTGLDAVQWAAEMARRGAGEILLTSMDRDGTKSGFDLALTRAVSDAVSVPVIASGGVGGLDDLADGVQQGGADAVLAASIFHYGEYTVAQAKERMAARGIPVRL 266          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_SHIFL (Imidazole glycerol phosphate synthase subunit hisF OS=Shigella flexneri GN=hisF PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.615e-16
Identity = 38/92 (41.30%), Postives = 61/92 (66.30%), Query Frame = 1
Query:   43 VEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            V+  GAGEI+LN ++ DG   G+D+  +K + +   +P+IAS GAG +EHF + FR  +   ALAA +FH++ + I  +K +L  +G+E+RI
Sbjct:  166 VQKRGAGEIVLNMMNQDGVCNGYDLKQLKKVREVCHVPLIASGGAGTMEHFLEAFRDADVDGALAASVFHKQIINIGELKAYLATQGVEIRI 257          
The following BLAST results are available for this feature:
BLAST of EY684744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HIS6_ECOL67.362e-1641.30Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_ECOL57.362e-1641.30Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_CUPTR7.362e-1641.51Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_BIFLO7.362e-1645.71Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_BIFLI7.362e-1645.71Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_BIFLD7.362e-1645.71Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_AZOBR7.362e-1644.76Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_AKKM87.362e-1646.00Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_ACIAC7.362e-1642.45Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_SHIFL9.615e-1641.30Imidazole glycerol phosphate synthase subunit hisF... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-B03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684744 ID=EY684744; Name=EY684744; organism=Citrus sinensis; type=EST; length=875bp
CGAGAAGGTCGACCAATTGGAGCTTATGAGCTTGCCAAAGCAGTTGAAGA
TCTTGGAGCTGGAGAGATACTATTGAATTGCATTGACTGTGATGGTCAAG
GGAAAGGGTTTGATATGGATCTAATAAAGTTGATCTCAGATGCTGTGAGC
ATCCCTGTGATTGCAAGTAGTGGTGCAGGTGCTGTTGAGCACTTCTCTGA
TGTTTTTAGGAAAACAAATGCATCTGCTGCCCTTGCTGCTGGCATTTTCC
ATCGAAAGGAGGTCCCCATTCAGTCTGTAAAAGAGCATTTGTACAAGGAA
GGGATAGAAGTTAGGATCTAACTTGGTGAATTCTGGGTAAGTTGGGATTT
AATGGTTGGCATTTGAACTTGATGAATACACTTTGCTTCGGATGAAGAAT
GAGGTAGTGAAGACTACAAGTAAAGATGGGCTGCACACTCCTCAAAGTGG
CTTTCTTCTGCTGACTTCCAAGCATTCCATGGATGACGCCCCACTAGGAC
CCACACACCCACACCTGGACCCCTCGACCACAACCGAAGTCCCTCCCCGA
AAAACCCACAATACCCTAACCAAGACGCCCCACACTCGAAATCCGCGCAT
TACAGCCACTGGGAGTCAGCCCGGGACGACCGCGCCAACCGACACAAAAA
GAACCGCACTCTCCAACCCGCAACACACATCCCCACCATGAAACAGCGAA
GGCAGAACCAAACAAAACACCACACGAGGGGAGACAACAACACGAAGCAA
GGGCAAACCACACGAGTCATGAACAACACAAAACCCCACCCCCCGCCACG
CGACGAACACGCCAACAAAGAGGCACACGGAACACAACCACACGAGCACG
CCCCACCACGACCCCACACGCCCTA
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