EY684744

Overview
NameEY684744
Unique NameEY684744
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length875
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_XYLFM (Imidazole glycerol phosphate synthase subunit hisF OS=Xylella fastidiosa (strain M12) GN=hisF PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.256e-15
Identity = 40/101 (39.60%), Postives = 61/101 (60.40%), Query Frame = 1
Query:   13 PIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVR 315
            P+   +     + LGAGEI+LNC+D DG   G+D+  +        +P++AS GAG ++HF+DVF K +   ALAA +FH   + I  +K+ L ++ IEVR
Sbjct:  155 PLRTLDWIVEAQRLGAGEIVLNCMDSDGVRCGYDIAQLSQARALCQVPLVASGGAGDMQHFADVFHKADVDGALAASVFHSGAISIPGLKQFLREQQIEVR 255          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_XYLF2 (Imidazole glycerol phosphate synthase subunit hisF OS=Xylella fastidiosa (strain M23) GN=hisF PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.256e-15
Identity = 40/101 (39.60%), Postives = 61/101 (60.40%), Query Frame = 1
Query:   13 PIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVR 315
            P+   +     + LGAGEI+LNC+D DG   G+D+  +        +P++AS GAG ++HF+DVF K +   ALAA +FH   + I  +K+ L ++ IEVR
Sbjct:  155 PLRTLDWIVEAQRLGAGEIVLNCMDSDGVRCGYDIAQLSQARALCQVPLVASGGAGDMQHFADVFHKADVDGALAASVFHSGAISIPGLKQFLREQQIEVR 255          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_STAES (Imidazole glycerol phosphate synthase subunit hisF OS=Staphylococcus epidermidis (strain ATCC 12228) GN=hisF PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.256e-15
Identity = 40/100 (40.00%), Postives = 64/100 (64.00%), Query Frame = 1
Query:   16 IGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVR 315
            +  Y+  + VE LGAGE+L+  +  DG  +GFD++ +  I   V+IP+IAS G G  +HF ++F++T+ SA LAA I H +E  +  +K+ + + GI VR
Sbjct:  153 VRVYDWVQEVELLGAGELLITSMHHDGMKQGFDIEHLAKIKQLVNIPIIASGGGGNAQHFVELFQQTDVSAGLAASILHDQETTVAEIKDKMREGGILVR 252          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_SHEPA (Imidazole glycerol phosphate synthase subunit hisF OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=hisF PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.256e-15
Identity = 40/92 (43.48%), Postives = 60/92 (65.22%), Query Frame = 1
Query:   43 VEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            V+  G GEI+LN ++ DG  +G+D+  + +I     +P+IAS GAG +EHF +VF   N  AALAA +FH+  + IQ++K +L  + I VRI
Sbjct:  166 VQKQGCGEIVLNVMNQDGVRQGYDIKQLSMIRSICDVPLIASGGAGTMEHFEEVFSLANVDAALAASVFHKGIIDIQALKRYLKDKNIAVRI 257          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_RHILO (Imidazole glycerol phosphate synthase subunit hisF OS=Rhizobium loti GN=hisF PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.256e-15
Identity = 45/106 (42.45%), Postives = 61/106 (57.55%), Query Frame = 1
Query:    1 REGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            RE   I A E A+ + D GAGEILL  +D DG   G+D+ L + I+DAV  P+IAS G G ++H  +  R  +A A LAA IFH     I   K H+   G+ +R+
Sbjct:  151 REKTGIDAVEFARKMVDRGAGEILLTSMDRDGTKAGYDIALTRAIADAVRAPIIASGGVGTLDHLVEGIRDGHAGAVLAASIFHFGTYTIAQAKAHMAAAGLPMRL 256          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_NEIMA (Imidazole glycerol phosphate synthase subunit hisF OS=Neisseria meningitidis serogroup A GN=hisF PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.256e-15
Identity = 44/101 (43.56%), Postives = 63/101 (62.38%), Query Frame = 1
Query:   16 IGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            + A E A  ++  GAGEILL  +D DG  +GF++ L + +++AV IPVIAS G G V H  +   +  A A LAAG+FH  E+ I+  K  + + GIEVR+
Sbjct:  155 LDAVEWAIEMQKRGAGEILLTGMDRDGTKQGFNLPLTRAVAEAVDIPVIASGGVGNVRHLIEGITEGKADAVLAAGVFHFGEIAIREAKHAMREAGIEVRL 255          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_MESSB (Imidazole glycerol phosphate synthase subunit hisF OS=Mesorhizobium sp. (strain BNC1) GN=hisF PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.256e-15
Identity = 44/101 (43.56%), Postives = 61/101 (60.40%), Query Frame = 1
Query:   16 IGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            I A E A+ V DLGAGEILL  +D DG   G+D+ L + ++DAV  PVIAS G G ++H  +  R  +A+A LAA IFH     +   K ++   GI +R+
Sbjct:  157 IDAVEFARRVVDLGAGEILLTSMDRDGTKAGYDIALTQAVADAVRAPVIASGGVGTLDHLVEGIRDGHATAVLAASIFHFGTYTVAEAKRYMADAGIPMRL 257          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_DESVM (Imidazole glycerol phosphate synthase subunit hisF OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=hisF PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.256e-15
Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = 1
Query:   22 AYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            A E AK  E LGAGE+ +N ID DG   G+++ L ++I+DAVSIPVIAS GAG+  H  D   +  A+AAL A I H  +  I  +K  +   G ++R+
Sbjct:  159 AIEWAKTCEALGAGELCVNSIDADGTKDGYELTLTRMIADAVSIPVIASGGAGSPAHMYDAITRGGATAALIASIVHYGQYTIPDLKRQISGMGAKLRM 257          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_BORA1 (Imidazole glycerol phosphate synthase subunit hisF OS=Bordetella avium (strain 197N) GN=hisF PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.256e-15
Identity = 44/106 (41.51%), Postives = 63/106 (59.43%), Query Frame = 1
Query:    1 REGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            R    + A   A+ +   GAGEILL  +D DG   GFD++L + +SDAV +PVIAS G G +EH ++      ASA LAA IFH  +  ++  K  + + GI+VR+
Sbjct:  161 RRATGLDAVAWARRMAAYGAGEILLTSMDRDGTKSGFDLELTRTVSDAVPVPVIASGGVGNLEHLAEGVTTGRASAVLAASIFHFGQHTVRECKAFMAQRGIDVRL 266          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_THERP (Imidazole glycerol phosphate synthase subunit hisF OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=hisF PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.640e-15
Identity = 46/104 (44.23%), Postives = 58/104 (55.77%), Query Frame = 1
Query:   10 RPIG--AYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVR 315
            RP G    E AK    LGAGEILL  +D DG  +G+D+ L++ + DAV +PVIAS GAG +EH         A A LAA IFH     +   K +L   G+ VR
Sbjct:  148 RPTGLDVIEWAKQGVSLGAGEILLTSMDTDGTQQGYDLALLRAVVDAVGVPVIASGGAGTLEHLYQALTMGGAHAVLAASIFHFGRYSVAEAKRYLAARGVPVR 251          
The following BLAST results are available for this feature:
BLAST of EY684744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HIS6_XYLFM1.256e-1539.60Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_XYLF21.256e-1539.60Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_STAES1.256e-1540.00Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_SHEPA1.256e-1543.48Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_RHILO1.256e-1542.45Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_NEIMA1.256e-1543.56Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_MESSB1.256e-1543.56Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_DESVM1.256e-1544.44Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_BORA11.256e-1541.51Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_THERP1.640e-1544.23Imidazole glycerol phosphate synthase subunit hisF... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-B03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684744 ID=EY684744; Name=EY684744; organism=Citrus sinensis; type=EST; length=875bp
CGAGAAGGTCGACCAATTGGAGCTTATGAGCTTGCCAAAGCAGTTGAAGA
TCTTGGAGCTGGAGAGATACTATTGAATTGCATTGACTGTGATGGTCAAG
GGAAAGGGTTTGATATGGATCTAATAAAGTTGATCTCAGATGCTGTGAGC
ATCCCTGTGATTGCAAGTAGTGGTGCAGGTGCTGTTGAGCACTTCTCTGA
TGTTTTTAGGAAAACAAATGCATCTGCTGCCCTTGCTGCTGGCATTTTCC
ATCGAAAGGAGGTCCCCATTCAGTCTGTAAAAGAGCATTTGTACAAGGAA
GGGATAGAAGTTAGGATCTAACTTGGTGAATTCTGGGTAAGTTGGGATTT
AATGGTTGGCATTTGAACTTGATGAATACACTTTGCTTCGGATGAAGAAT
GAGGTAGTGAAGACTACAAGTAAAGATGGGCTGCACACTCCTCAAAGTGG
CTTTCTTCTGCTGACTTCCAAGCATTCCATGGATGACGCCCCACTAGGAC
CCACACACCCACACCTGGACCCCTCGACCACAACCGAAGTCCCTCCCCGA
AAAACCCACAATACCCTAACCAAGACGCCCCACACTCGAAATCCGCGCAT
TACAGCCACTGGGAGTCAGCCCGGGACGACCGCGCCAACCGACACAAAAA
GAACCGCACTCTCCAACCCGCAACACACATCCCCACCATGAAACAGCGAA
GGCAGAACCAAACAAAACACCACACGAGGGGAGACAACAACACGAAGCAA
GGGCAAACCACACGAGTCATGAACAACACAAAACCCCACCCCCCGCCACG
CGACGAACACGCCAACAAAGAGGCACACGGAACACAACCACACGAGCACG
CCCCACCACGACCCCACACGCCCTA
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