EY684744

Overview
NameEY684744
Unique NameEY684744
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length875
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_STACT (Imidazole glycerol phosphate synthase subunit hisF OS=Staphylococcus carnosus (strain TM300) GN=hisF PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.404e-20
Identity = 50/100 (50.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:   16 IGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVR 315
            I   +  + VE LGAGE+L+  +D DG  +GFD  L+  I+  VSIPVIAS G G  +HF D+F++TN SA LAA IFH KE  I +VK +L  +G++VR
Sbjct:  153 IRVLDWVRQVEYLGAGELLVTSMDYDGVKQGFDHQLLNQINTVVSIPVIASGGGGNAQHFVDLFQQTNVSAGLAASIFHDKETTIGAVKTYLKDKGVDVR 252          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_GEOKA (Imidazole glycerol phosphate synthase subunit hisF OS=Geobacillus kaustophilus GN=hisF PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.404e-20
Identity = 48/88 (54.55%), Postives = 61/88 (69.32%), Query Frame = 1
Query:   52 LGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVR 315
            LGAGEILL  +D DG   GFD++L + +S+AV +PVIAS GAG  EHF + F K  A AALAA IFH KE  +  VK +L ++G+ VR
Sbjct:  165 LGAGEILLTSMDADGGKNGFDIELTRRVSEAVPVPVIASGGAGKAEHFLEAFEKGKADAALAASIFHYKETSVGQVKAYLKEKGVNVR 252          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_CHLL2 (Imidazole glycerol phosphate synthase subunit hisF OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=hisF PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 8.404e-20
Identity = 50/102 (49.02%), Postives = 69/102 (67.65%), Query Frame = 1
Query:   13 PIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            P+ A E A+ V++LGAGEILL  +D DG  +G+D D++  +S +V IPVIAS GAG +EH  D F +  A AALAA IFH ++  I+  K++L   GI VR+
Sbjct:  150 PLEAVEWAQMVQELGAGEILLTSMDRDGTQEGYDNDILAKVSTSVHIPVIASGGAGNLEHLYDGFTRGKADAALAASIFHFRQYSIRQAKQYLRDRGIPVRL 251          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_METS3 (Imidazole glycerol phosphate synthase subunit hisF OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=hisF PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.098e-19
Identity = 52/106 (49.06%), Postives = 69/106 (65.09%), Query Frame = 1
Query:    1 REGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            RE   + A E A   ++LGAGEILL  +D DG  +G+D+ L K I+DA+ IPVIAS G G   H  DVF+KT+ SAALAA IFH  +  I  VK++L +  + VR+
Sbjct:  169 REFTGMDAIEWAVKCQELGAGEILLTSMDGDGTKEGYDIALNKAINDAIDIPVIASGGGGNPAHILDVFQKTDVSAALAASIFHFNQYSINDVKQYLKENNVPVRL 274          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_RHOPS (Imidazole glycerol phosphate synthase subunit hisF OS=Rhodopseudomonas palustris (strain BisB5) GN=hisF PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.433e-19
Identity = 49/106 (46.23%), Postives = 69/106 (65.09%), Query Frame = 1
Query:    1 REGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            R+G  I A E A+ V  LGAGEILL  +D DG   GFD+ L + I+D+V +PVIAS G G ++H  D  R+ +A+A LAA IFH  E  I+  K+H+ + G+ +R+
Sbjct:  148 RKGTGIDAIEFAQEVVSLGAGEILLTSMDRDGTRSGFDIPLTRAIADSVQVPVIASGGVGDLDHLVDGIREGHATAVLAASIFHFGEYTIREAKDHMVRAGLPMRL 253          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_BACSU (Imidazole glycerol phosphate synthase subunit hisF OS=Bacillus subtilis GN=hisF PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.433e-19
Identity = 49/87 (56.32%), Postives = 60/87 (68.97%), Query Frame = 1
Query:   55 GAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVR 315
            GAGEILL  +D DG+ KGFD  L KL+S+AV +PVIAS GAG  +H  + F K  A AALAA IFH KE  I+ VK +L + G+ VR
Sbjct:  166 GAGEILLTSMDSDGEKKGFDHTLTKLVSEAVPVPVIASGGAGNAQHMLEAFTKGEADAALAASIFHYKETSIKEVKSYLKEYGVNVR 252          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_BACHD (Imidazole glycerol phosphate synthase subunit hisF OS=Bacillus halodurans GN=hisF PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.433e-19
Identity = 51/87 (58.62%), Postives = 59/87 (67.82%), Query Frame = 1
Query:   55 GAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVR 315
            GAGEILL  +D DG   GFD+ L   +S+AVS+PVIAS GAGA E F DVF    A AALAA IFH KE  +  VK HL +EG+ VR
Sbjct:  166 GAGEILLTSMDQDGAKTGFDLALTTKVSEAVSVPVIASGGAGAKEDFVDVFMNAYADAALAASIFHYKETSVAEVKTHLREEGVAVR 252          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_BACCN (Imidazole glycerol phosphate synthase subunit hisF OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=hisF PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.433e-19
Identity = 53/101 (52.48%), Postives = 65/101 (64.36%), Query Frame = 1
Query:   16 IGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            I A   AK V +LGAGEILL  +D DG   G+++ L  +IS  VSIPVIAS G G+  H  +VF  T+ +AALAA IFH  E  +Q VK+ L   GIEVRI
Sbjct:  152 IDAVHWAKQVAELGAGEILLTSMDADGTKDGYNLRLTDIISANVSIPVIASGGCGSANHIVEVFAHTSVNAALAASIFHYGECTVQEVKQKLQYAGIEVRI 252          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_THIDA (Imidazole glycerol phosphate synthase subunit hisF OS=Thiobacillus denitrificans (strain ATCC 25259) GN=hisF PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.872e-19
Identity = 48/106 (45.28%), Postives = 66/106 (62.26%), Query Frame = 1
Query:    1 REGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            R    + A E AK +E LGAGE+LL  +D DG   GFD++L + ISDAV +P++AS G G ++H  D  R+  A A LAA IFH  E  +   K ++ + GIEVR+
Sbjct:  146 RTATGLDAVEWAKKMESLGAGELLLTSMDRDGTKTGFDLELTRAISDAVDVPIVASGGVGTLQHMVDGVREGRADAVLAASIFHFGEYRVDEAKAYMKRHGIEVRL 251          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_RHOPT (Imidazole glycerol phosphate synthase subunit hisF OS=Rhodopseudomonas palustris (strain TIE-1) GN=hisF PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.872e-19
Identity = 49/106 (46.23%), Postives = 69/106 (65.09%), Query Frame = 1
Query:    1 REGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            R+G  I A E A+ V  LGAGEILL  +D DG   GFD+ L + I+D+V +PVIAS G G ++H  D  R+ +A+A LAA IFH  E  I+  K+H+ + G+ +R+
Sbjct:  148 RKGTGIDAIEFAQEVVSLGAGEILLTSMDRDGTKSGFDIPLTRAIADSVGVPVIASGGVGNLDHLVDGIREGHATAVLAASIFHFGEYTIRQAKDHMVQAGLPMRL 253          
The following BLAST results are available for this feature:
BLAST of EY684744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HIS6_STACT8.404e-2050.00Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_GEOKA8.404e-2054.55Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_CHLL28.404e-2049.02Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_METS31.098e-1949.06Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_RHOPS1.433e-1946.23Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_BACSU1.433e-1956.32Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_BACHD1.433e-1958.62Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_BACCN1.433e-1952.48Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_THIDA1.872e-1945.28Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_RHOPT1.872e-1946.23Imidazole glycerol phosphate synthase subunit hisF... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-B03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684744 ID=EY684744; Name=EY684744; organism=Citrus sinensis; type=EST; length=875bp
CGAGAAGGTCGACCAATTGGAGCTTATGAGCTTGCCAAAGCAGTTGAAGA
TCTTGGAGCTGGAGAGATACTATTGAATTGCATTGACTGTGATGGTCAAG
GGAAAGGGTTTGATATGGATCTAATAAAGTTGATCTCAGATGCTGTGAGC
ATCCCTGTGATTGCAAGTAGTGGTGCAGGTGCTGTTGAGCACTTCTCTGA
TGTTTTTAGGAAAACAAATGCATCTGCTGCCCTTGCTGCTGGCATTTTCC
ATCGAAAGGAGGTCCCCATTCAGTCTGTAAAAGAGCATTTGTACAAGGAA
GGGATAGAAGTTAGGATCTAACTTGGTGAATTCTGGGTAAGTTGGGATTT
AATGGTTGGCATTTGAACTTGATGAATACACTTTGCTTCGGATGAAGAAT
GAGGTAGTGAAGACTACAAGTAAAGATGGGCTGCACACTCCTCAAAGTGG
CTTTCTTCTGCTGACTTCCAAGCATTCCATGGATGACGCCCCACTAGGAC
CCACACACCCACACCTGGACCCCTCGACCACAACCGAAGTCCCTCCCCGA
AAAACCCACAATACCCTAACCAAGACGCCCCACACTCGAAATCCGCGCAT
TACAGCCACTGGGAGTCAGCCCGGGACGACCGCGCCAACCGACACAAAAA
GAACCGCACTCTCCAACCCGCAACACACATCCCCACCATGAAACAGCGAA
GGCAGAACCAAACAAAACACCACACGAGGGGAGACAACAACACGAAGCAA
GGGCAAACCACACGAGTCATGAACAACACAAAACCCCACCCCCCGCCACG
CGACGAACACGCCAACAAAGAGGCACACGGAACACAACCACACGAGCACG
CCCCACCACGACCCCACACGCCCTA
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