EY684744

Overview
NameEY684744
Unique NameEY684744
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length875
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_RHOPA (Imidazole glycerol phosphate synthase subunit hisF OS=Rhodopseudomonas palustris GN=hisF PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.872e-19
Identity = 49/106 (46.23%), Postives = 69/106 (65.09%), Query Frame = 1
Query:    1 REGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            R+G  I A E A+ V  LGAGEILL  +D DG   GFD+ L + I+D+V +PVIAS G G ++H  D  R+ +A+A LAA IFH  E  I+  K+H+ + G+ +R+
Sbjct:  148 RKGTGIDAIEFAQEVVSLGAGEILLTSMDRDGTKSGFDIPLTRAIADSVGVPVIASGGVGNLDHLVDGIREGHATAVLAASIFHFGEYTIRQAKDHMVQAGLPMRL 253          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_PROVI (Imidazole glycerol phosphate synthase subunit hisF OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=hisF PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.872e-19
Identity = 51/99 (51.52%), Postives = 68/99 (68.69%), Query Frame = 1
Query:   22 AYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            A E A  V++LGAGEILL  +D DG  +G+D + + LIS +V IPVIAS GAG++EH  D F K  A AALAA IFH ++  I+  K++L+  GI VR+
Sbjct:  153 ALEWALKVQELGAGEILLTSMDRDGTKEGYDNESLALISTSVHIPVIASGGAGSLEHLYDGFTKGRADAALAASIFHFRQHSIREAKQYLHDRGITVRL 251          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_NITHX (Imidazole glycerol phosphate synthase subunit hisF OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=hisF PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.872e-19
Identity = 48/106 (45.28%), Postives = 71/106 (66.98%), Query Frame = 1
Query:    1 REGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            R+   I A + A+ V  LGAGEILL  +D DG  +GFD+ L +L++D+VS+PVIAS G G ++H  D  R+ +A+A LAA IFH  E  I+  K+H+ + G+ +R+
Sbjct:  151 RKSTGIDAIDYAQEVVSLGAGEILLTSMDRDGTRQGFDLPLTRLVADSVSVPVIASGGVGNLDHLVDGIREGHATAVLAASIFHFGEFTIRQAKDHMARAGLPMRL 256          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_GEOSM (Imidazole glycerol phosphate synthase subunit hisF OS=Geobacter sp. (strain M21) GN=hisF PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.872e-19
Identity = 49/101 (48.51%), Postives = 65/101 (64.36%), Query Frame = 1
Query:   16 IGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            I A E A+ +E +GAGEILL  +D DG   G+D+ L + + DAVSIPVIAS G G + H  D F +  ASA LAA IFH +E  I+  K +L + G+ VR+
Sbjct:  152 IDAVEWAQRMESMGAGEILLTSMDRDGTKDGYDLPLTRAVVDAVSIPVIASGGVGGLSHLYDGFTQAGASACLAASIFHYREYTIEEAKSYLRERGVPVRL 252          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_XANP2 (Imidazole glycerol phosphate synthase subunit hisF OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=hisF PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.445e-19
Identity = 50/101 (49.50%), Postives = 65/101 (64.36%), Query Frame = 1
Query:   16 IGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            I A + A+ V DLGAGEILL  +D DG G+GFD  L + ++DAV +PVIAS G G ++H  D  R+  ASA LAA IFH     I+  KE L + G+ VR+
Sbjct:  156 IDAIQFAREVVDLGAGEILLTSMDRDGTGQGFDCALTRAVADAVHVPVIASGGVGTLDHLVDGIREGGASAVLAASIFHFGTFTIREAKERLAEAGLPVRL 256          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_HERA2 (Imidazole glycerol phosphate synthase subunit hisF OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=hisF PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.445e-19
Identity = 51/107 (47.66%), Postives = 67/107 (62.62%), Query Frame = 1
Query:    1 REGRPIG--AYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVR 315
            R+ RP G  A E AK V DLGAGE+++N +D DG G G+D +L+  IS  V +PVIAS GAG  EH      +  A A LAA IFH     +++VKE+L  +GI +R
Sbjct:  151 RDPRPTGLDAIEWAKRVVDLGAGELVINSMDADGTGAGYDNELLSAISQQVGVPVIASGGAGKPEHLLAALHEGKADAVLAASIFHFGTYTVEAVKEYLANQGIPMR 257          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_GEOBB (Imidazole glycerol phosphate synthase subunit hisF OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=hisF PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.445e-19
Identity = 49/101 (48.51%), Postives = 65/101 (64.36%), Query Frame = 1
Query:   16 IGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            I A E A+ +E +GAGEILL  +D DG   G+D+ L + + DAVSIPVIAS G G + H  D F +  ASA LAA IFH +E  I+  K +L + G+ VR+
Sbjct:  152 IDAVEWAQRMEGMGAGEILLTSMDRDGTKDGYDLPLTRAVVDAVSIPVIASGGVGGLSHLYDGFTQAGASACLAASIFHYREYTIEEAKSYLRERGVPVRL 252          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_CHLCH (Imidazole glycerol phosphate synthase subunit hisF OS=Chlorobium chlorochromatii (strain CaD3) GN=hisF PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.445e-19
Identity = 51/98 (52.04%), Postives = 67/98 (68.37%), Query Frame = 1
Query:   22 AYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVR 315
            A E A  V++LGAGEILL  +D DG  +G++ + +++IS AV IPVIAS GAG +EH  D F K  A AALAA IFH +   I+  KE+L+K G+ VR
Sbjct:  153 ALEWALKVQELGAGEILLTSMDRDGTKEGYENNSLRMISTAVHIPVIASGGAGNLEHLYDGFSKGCADAALAASIFHFRHYSIRQAKEYLHKRGVAVR 250          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_BACC3 (Imidazole glycerol phosphate synthase subunit hisF OS=Bacillus cereus (strain 03BB102) GN=hisF PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.445e-19
Identity = 51/99 (51.52%), Postives = 63/99 (63.64%), Query Frame = 1
Query:   22 AYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            A E AK V  LGAGEILL  +D DG   G+D+ L + IS +VS+PVIAS G G  +H  +VF+KT   AALAA IFH  E  +Q VK  L    +EVR+
Sbjct:  154 AIEWAKRVVMLGAGEILLTSMDADGTKNGYDLRLTEEISKSVSVPVIASGGCGHADHIIEVFQKTTVDAALAASIFHYGEATVQDVKRKLRNANVEVRL 252          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_BACAH (Imidazole glycerol phosphate synthase subunit hisF OS=Bacillus thuringiensis (strain Al Hakam) GN=hisF PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.445e-19
Identity = 51/99 (51.52%), Postives = 63/99 (63.64%), Query Frame = 1
Query:   22 AYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            A E AK V  LGAGEILL  +D DG   G+D+ L + IS +VS+PVIAS G G  +H  +VF+KT   AALAA IFH  E  +Q VK  L    +EVR+
Sbjct:  154 AIEWAKRVVMLGAGEILLTSMDADGTKNGYDLRLTEEISKSVSVPVIASGGCGHADHIIEVFQKTTVDAALAASIFHYGEATVQDVKRKLRNANVEVRL 252          
The following BLAST results are available for this feature:
BLAST of EY684744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HIS6_RHOPA1.872e-1946.23Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_PROVI1.872e-1951.52Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_NITHX1.872e-1945.28Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_GEOSM1.872e-1948.51Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_XANP22.445e-1949.50Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_HERA22.445e-1947.66Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_GEOBB2.445e-1948.51Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_CHLCH2.445e-1952.04Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_BACC32.445e-1951.52Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_BACAH2.445e-1951.52Imidazole glycerol phosphate synthase subunit hisF... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-B03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684744 ID=EY684744; Name=EY684744; organism=Citrus sinensis; type=EST; length=875bp
CGAGAAGGTCGACCAATTGGAGCTTATGAGCTTGCCAAAGCAGTTGAAGA
TCTTGGAGCTGGAGAGATACTATTGAATTGCATTGACTGTGATGGTCAAG
GGAAAGGGTTTGATATGGATCTAATAAAGTTGATCTCAGATGCTGTGAGC
ATCCCTGTGATTGCAAGTAGTGGTGCAGGTGCTGTTGAGCACTTCTCTGA
TGTTTTTAGGAAAACAAATGCATCTGCTGCCCTTGCTGCTGGCATTTTCC
ATCGAAAGGAGGTCCCCATTCAGTCTGTAAAAGAGCATTTGTACAAGGAA
GGGATAGAAGTTAGGATCTAACTTGGTGAATTCTGGGTAAGTTGGGATTT
AATGGTTGGCATTTGAACTTGATGAATACACTTTGCTTCGGATGAAGAAT
GAGGTAGTGAAGACTACAAGTAAAGATGGGCTGCACACTCCTCAAAGTGG
CTTTCTTCTGCTGACTTCCAAGCATTCCATGGATGACGCCCCACTAGGAC
CCACACACCCACACCTGGACCCCTCGACCACAACCGAAGTCCCTCCCCGA
AAAACCCACAATACCCTAACCAAGACGCCCCACACTCGAAATCCGCGCAT
TACAGCCACTGGGAGTCAGCCCGGGACGACCGCGCCAACCGACACAAAAA
GAACCGCACTCTCCAACCCGCAACACACATCCCCACCATGAAACAGCGAA
GGCAGAACCAAACAAAACACCACACGAGGGGAGACAACAACACGAAGCAA
GGGCAAACCACACGAGTCATGAACAACACAAAACCCCACCCCCCGCCACG
CGACGAACACGCCAACAAAGAGGCACACGGAACACAACCACACGAGCACG
CCCCACCACGACCCCACACGCCCTA
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