EY684744

Overview
NameEY684744
Unique NameEY684744
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length875
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_ALKMQ (Imidazole glycerol phosphate synthase subunit hisF OS=Alkaliphilus metalliredigens (strain QYMF) GN=hisF PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.445e-19
Identity = 51/105 (48.57%), Postives = 70/105 (66.67%), Query Frame = 1
Query:    1 REGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVR 315
            RE   + A + A+ V  LGAGEILL  +D DG   G+D+++ K IS AV+IPVIAS GAG+V+ F+D F +  A AALAA +FH  EV I  +K+ L++  I +R
Sbjct:  147 REKTGLEAVDWARRVAQLGAGEILLTSMDRDGTKSGYDLEITKRISQAVNIPVIASGGAGSVQDFADAFIEGQADAALAASLFHYNEVSIPRLKQSLHEMDISMR 251          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_NITEC (Imidazole glycerol phosphate synthase subunit hisF OS=Nitrosomonas eutropha (strain C91) GN=hisF PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.193e-19
Identity = 51/106 (48.11%), Postives = 67/106 (63.21%), Query Frame = 1
Query:    1 REGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            R+   + A E A+ ++ LGAGEILL  +D DG   GFD+ L + ISDAV +PVIAS G G ++H  D   + +A A LAA IFH  E  I+  KE+L   GIEVR+
Sbjct:  153 RKPTGLDAIEWAQKIQSLGAGEILLTSMDRDGTRSGFDLVLTRTISDAVDLPVIASGGVGNLDHLVDGILQGHADAVLAASIFHYGEFSIRQAKEYLLSHGIEVRL 258          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_DINSH (Imidazole glycerol phosphate synthase subunit hisF OS=Dinoroseobacter shibae (strain DFL 12) GN=hisF PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.193e-19
Identity = 52/106 (49.06%), Postives = 68/106 (64.15%), Query Frame = 1
Query:    1 REGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            R+   I A E AK V + GAGEILL  +D DG  +GF++ L + ISDAVS+PVIAS G G ++H  +   +  ASA LAA IFH  E  I+  KEH+ + GI VR+
Sbjct:  147 RKPTGIDAVEFAKTVVEKGAGEILLTSMDRDGTKQGFNIALTRAISDAVSVPVIASGGVGTLDHLVEGVTEGGASAVLAASIFHFGEFTIREAKEHMAEAGIPVRL 252          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_DECAR (Imidazole glycerol phosphate synthase subunit hisF OS=Dechloromonas aromatica (strain RCB) GN=hisF PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.193e-19
Identity = 50/106 (47.17%), Postives = 66/106 (62.26%), Query Frame = 1
Query:    1 REGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            R    + A E AK ++ LGAGEILL  +D DG   GFD+ L + +SDAV IPVIAS G G ++H +D   +  A A LAA IFH  E  ++  KE++   GIEVR+
Sbjct:  147 RNDTGMDAIEWAKKIDALGAGEILLTSMDRDGTKNGFDLALTRAVSDAVKIPVIASGGVGNLQHLADGVTEGRADAVLAASIFHFGEYTVRQAKEYMASRGIEVRL 252          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_CHLP8 (Imidazole glycerol phosphate synthase subunit hisF OS=Chlorobaculum parvum (strain NCIB 8327) GN=hisF PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.193e-19
Identity = 51/99 (51.52%), Postives = 68/99 (68.69%), Query Frame = 1
Query:   22 AYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            A E A  V++LGAGEILL  +D DG  +G+D +++K IS +V IPVIAS GAG +EH  + F K +A AALAA IFH +   I+  KE+L  +GI VR+
Sbjct:  153 ALEWAHRVQELGAGEILLTSMDRDGTQEGYDNEILKRISTSVHIPVIASGGAGNLEHLYEGFTKGHADAALAASIFHFRTYSIREAKEYLRDKGIAVRL 251          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_BRASB (Imidazole glycerol phosphate synthase subunit hisF OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=hisF PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.193e-19
Identity = 48/106 (45.28%), Postives = 69/106 (65.09%), Query Frame = 1
Query:    1 REGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            R+   I A E A+ V  LGAGEILL  +D DG  +GFD+ L + ++D+V +PVIAS G G ++H  D  R+  A+A LAA IFH  E  I+  KEH+ ++G+ +R+
Sbjct:  151 RKSTGIDALEYAQEVVSLGAGEILLTSMDRDGTRQGFDIPLTRAVADSVPVPVIASGGVGNLDHLVDGIRQGRATAVLAASIFHFGEFTIRQAKEHMVRQGLPMRL 256          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_ARCB4 (Imidazole glycerol phosphate synthase subunit hisF OS=Arcobacter butzleri (strain RM4018) GN=hisF PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.193e-19
Identity = 52/106 (49.06%), Postives = 69/106 (65.09%), Query Frame = 1
Query:    1 REGRPIGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            RE   + A   AK V D GAGEILL  +D DG   GF++++ + +S+ V IPVIAS GAG++EH  + F +  ASAALAA IFH KE+ I  +K++L    I VRI
Sbjct:  149 REDTGLDALSWAKEVYDRGAGEILLTSMDTDGAKTGFELNITRQVSNLVDIPVIASGGAGSMEHIKEAF-ENGASAALAASIFHFKEIDIMDLKKYLRANNIPVRI 253          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_SILST (Imidazole glycerol phosphate synthase subunit hisF OS=Silicibacter sp. (strain TM1040) GN=hisF PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.171e-19
Identity = 49/101 (48.51%), Postives = 64/101 (63.37%), Query Frame = 1
Query:   16 IGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            I A E A+ V   GAGEILL  +D DG   GF++++ + ISDAV++PVIAS G G ++H  D   K  ASA LAA IFH  E  +Q  KEH+   GI +R+
Sbjct:  152 IDAVEFARLVTAKGAGEILLTSMDRDGTKSGFNLEMTRAISDAVNVPVIASGGVGTLDHLVDGVTKGGASAVLAASIFHFGEYTVQEAKEHMIANGIPMRL 252          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_DESAP (Imidazole glycerol phosphate synthase subunit hisF OS=Desulforudis audaxviator (strain MP104C) GN=hisF PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.171e-19
Identity = 51/101 (50.50%), Postives = 66/101 (65.35%), Query Frame = 1
Query:   16 IGAYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            + A E A+ VE LGAGEILL  +D DG   G+D+ L + ++DAV IPVIAS G G +EH ++   +  A AALAA IFH  E  I+ VKE+L   GI VR+
Sbjct:  152 LDAVEWARRVESLGAGEILLTSMDRDGTKDGYDLLLTRAVADAVRIPVIASGGVGTLEHIAEGLTEGGADAALAASIFHFGEYSIREVKEYLAARGIAVRL 252          
BLAST of EY684744 vs. ExPASy Swiss-Prot
Match: HIS6_BACC0 (Imidazole glycerol phosphate synthase subunit hisF OS=Bacillus cereus (strain AH820) GN=hisF PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.171e-19
Identity = 52/99 (52.53%), Postives = 63/99 (63.64%), Query Frame = 1
Query:   22 AYELAKAVEDLGAGEILLNCIDCDGQGKGFDMDLIKLISDAVSIPVIASSGAGAVEHFSDVFRKTNASAALAAGIFHRKEVPIQSVKEHLYKEGIEVRI 318
            A E AK V  LGAGEILL  +D DG   G+D+ L + IS +VS+PVIAS G G  +H  +VF+KT   AALAA IFH  EV I  VK  L    +EVR+
Sbjct:  154 AIEWAKRVVMLGAGEILLTSMDADGTKNGYDLRLTEEISKSVSVPVIASGGCGHADHIIEVFQKTTVDAALAASIFHYGEVTIGDVKRKLRNANVEVRL 252          
The following BLAST results are available for this feature:
BLAST of EY684744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HIS6_ALKMQ2.445e-1948.57Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_NITEC3.193e-1948.11Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_DINSH3.193e-1949.06Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_DECAR3.193e-1947.17Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_CHLP83.193e-1951.52Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_BRASB3.193e-1945.28Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_ARCB43.193e-1949.06Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_SILST4.171e-1948.51Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_DESAP4.171e-1950.50Imidazole glycerol phosphate synthase subunit hisF... [more]
HIS6_BACC04.171e-1952.53Imidazole glycerol phosphate synthase subunit hisF... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-B03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684744 ID=EY684744; Name=EY684744; organism=Citrus sinensis; type=EST; length=875bp
CGAGAAGGTCGACCAATTGGAGCTTATGAGCTTGCCAAAGCAGTTGAAGA
TCTTGGAGCTGGAGAGATACTATTGAATTGCATTGACTGTGATGGTCAAG
GGAAAGGGTTTGATATGGATCTAATAAAGTTGATCTCAGATGCTGTGAGC
ATCCCTGTGATTGCAAGTAGTGGTGCAGGTGCTGTTGAGCACTTCTCTGA
TGTTTTTAGGAAAACAAATGCATCTGCTGCCCTTGCTGCTGGCATTTTCC
ATCGAAAGGAGGTCCCCATTCAGTCTGTAAAAGAGCATTTGTACAAGGAA
GGGATAGAAGTTAGGATCTAACTTGGTGAATTCTGGGTAAGTTGGGATTT
AATGGTTGGCATTTGAACTTGATGAATACACTTTGCTTCGGATGAAGAAT
GAGGTAGTGAAGACTACAAGTAAAGATGGGCTGCACACTCCTCAAAGTGG
CTTTCTTCTGCTGACTTCCAAGCATTCCATGGATGACGCCCCACTAGGAC
CCACACACCCACACCTGGACCCCTCGACCACAACCGAAGTCCCTCCCCGA
AAAACCCACAATACCCTAACCAAGACGCCCCACACTCGAAATCCGCGCAT
TACAGCCACTGGGAGTCAGCCCGGGACGACCGCGCCAACCGACACAAAAA
GAACCGCACTCTCCAACCCGCAACACACATCCCCACCATGAAACAGCGAA
GGCAGAACCAAACAAAACACCACACGAGGGGAGACAACAACACGAAGCAA
GGGCAAACCACACGAGTCATGAACAACACAAAACCCCACCCCCCGCCACG
CGACGAACACGCCAACAAAGAGGCACACGGAACACAACCACACGAGCACG
CCCCACCACGACCCCACACGCCCTA
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