EY684742

Overview
NameEY684742
Unique NameEY684742
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684742 vs. ExPASy Swiss-Prot
Match: TCTP_PEA (Translationally-controlled tumor protein homolog OS=Pisum sativum GN=TCTP PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.190e-20
Identity = 51/70 (72.86%), Postives = 56/70 (80.00%), Query Frame = 1
Query:  103 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXHAVKVVDV 312
            MLVYQDLLTGDELLSDS+PYKE ENG+LWEVEGKWVV+GAVDV+IGANPS             AVKVVD+
Sbjct:    1 MLVYQDLLTGDELLSDSYPYKEIENGMLWEVEGKWVVKGAVDVNIGANPSAEGGEDEGVDDT-AVKVVDI 69          
BLAST of EY684742 vs. ExPASy Swiss-Prot
Match: TCTP_ARATH (Translationally-controlled tumor protein homolog OS=Arabidopsis thaliana GN=TCTP PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.190e-20
Identity = 50/70 (71.43%), Postives = 52/70 (74.29%), Query Frame = 1
Query:  103 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXHAVKVVDV 312
            MLVYQDLLTGDELLSDSFPYKE ENGILWEVEGKWV  GAVDV+IGANPS               KVVD+
Sbjct:    1 MLVYQDLLTGDELLSDSFPYKEIENGILWEVEGKWVTVGAVDVNIGANPSAEEGGEDEGVDDSTQKVVDI 70          
BLAST of EY684742 vs. ExPASy Swiss-Prot
Match: TCTP_FRAAN (Translationally-controlled tumor protein homolog OS=Fragaria ananassa GN=TCTP PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.555e-20
Identity = 50/72 (69.44%), Postives = 55/72 (76.39%), Query Frame = 1
Query:  103 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAVDVDIGANPS--XXXXXXXXXXXXHAVKVVDV 312
            MLVYQDLL+GDELLSDSFPYKE +NG+LWEV+GKWVVQGAVDVDIGANPS                VKVVD+
Sbjct:    1 MLVYQDLLSGDELLSDSFPYKEIQNGVLWEVDGKWVVQGAVDVDIGANPSAEGADADADEGVDDQTVKVVDI 72          
BLAST of EY684742 vs. ExPASy Swiss-Prot
Match: TCTP_PSEMZ (Translationally-controlled tumor protein homolog OS=Pseudotsuga menziesii GN=TCTP PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.652e-20
Identity = 50/70 (71.43%), Postives = 54/70 (77.14%), Query Frame = 1
Query:  103 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXHAVKVVDV 312
            M+VYQDLL+GDELLSDSFPYKE  NG+LWEVEGKWVVQGAVDVDIGANPS              VKVVD+
Sbjct:    1 MIVYQDLLSGDELLSDSFPYKELYNGVLWEVEGKWVVQGAVDVDIGANPS-AEGGDEEGVKIRLVKVVDI 69          
BLAST of EY684742 vs. ExPASy Swiss-Prot
Match: TCTP_MAIZE (Translationally-controlled tumor protein homolog OS=Zea mays GN=TCTP PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.716e-20
Identity = 50/70 (71.43%), Postives = 53/70 (75.71%), Query Frame = 1
Query:  103 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXHAVKVVDV 312
            MLVYQDLL+GDELLSDSF YKE ENG+LWEVEGKWV QG VDVDIGANPS             AVKVVD+
Sbjct:    1 MLVYQDLLSGDELLSDSFTYKELENGVLWEVEGKWVTQGPVDVDIGANPSAEGGEDESVDDT-AVKVVDI 69          
BLAST of EY684742 vs. ExPASy Swiss-Prot
Match: TCTP_TOBAC (Translationally-controlled tumor protein homolog OS=Nicotiana tabacum GN=TCTP PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.532e-19
Identity = 46/70 (65.71%), Postives = 52/70 (74.29%), Query Frame = 1
Query:  103 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXHAVKVVDV 312
            MLVYQDLL+GDEL SDSF Y E  NG+LWEV+GKWVVQGAVDV+IGANPS             A+KVVD+
Sbjct:    1 MLVYQDLLSGDELPSDSFSYTELGNGVLWEVQGKWVVQGAVDVNIGANPSAEGADEDEGVDDQAIKVVDI 70          
BLAST of EY684742 vs. ExPASy Swiss-Prot
Match: TCTP_MEDSA (Translationally-controlled tumor protein homolog OS=Medicago sativa GN=TCTP PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 6.532e-19
Identity = 48/70 (68.57%), Postives = 53/70 (75.71%), Query Frame = 1
Query:  103 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXHAVKVVDV 312
            MLVYQDLLTGDELLSDS+PYKE ENG+LWEVEGKWV +G V+VDIGAN S             AVKVVD+
Sbjct:    1 MLVYQDLLTGDELLSDSYPYKEIENGMLWEVEGKWVTKGVVEVDIGANASAEGGEDEGVDDT-AVKVVDI 69          
BLAST of EY684742 vs. ExPASy Swiss-Prot
Match: TCTP_BRAOL (Translationally-controlled tumor protein homolog OS=Brassica oleracea GN=TCTP PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.532e-19
Identity = 46/70 (65.71%), Postives = 50/70 (71.43%), Query Frame = 1
Query:  103 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXHAVKVVDV 312
            MLVY DLLTGDELLSDSFPYKE ENGILWEVEGKW  +G V+V+IGANPS               KVVD+
Sbjct:    1 MLVYTDLLTGDELLSDSFPYKEIENGILWEVEGKWTTKGCVEVNIGANPSAEEGGEDEGVDDSVEKVVDI 70          
The following BLAST results are available for this feature:
BLAST of EY684742 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
TCTP_PEA1.190e-2072.86Translationally-controlled tumor protein homolog O... [more]
TCTP_ARATH1.190e-2071.43Translationally-controlled tumor protein homolog O... [more]
TCTP_FRAAN1.555e-2069.44Translationally-controlled tumor protein homolog O... [more]
TCTP_PSEMZ2.652e-2071.43Translationally-controlled tumor protein homolog O... [more]
TCTP_MAIZE7.716e-2071.43Translationally-controlled tumor protein homolog O... [more]
TCTP_TOBAC6.532e-1965.71Translationally-controlled tumor protein homolog O... [more]
TCTP_MEDSA6.532e-1968.57Translationally-controlled tumor protein homolog O... [more]
TCTP_BRAOL6.532e-1965.71Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-A12-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684742 ID=EY684742; Name=EY684742; organism=Citrus sinensis; type=EST; length=825bp
CCACGCGTCCGCGCTCTCTCACCGCTGCGTCTCTCTCTCTCTCTCTCCAG
TTTTCTCCGTTGATTATTTTTCTTTTTTGTGTTCGCGAGAGAGACTGCAA
TCATGTTGGTCTATCAAGATCTCCTCACCGGTGATGAGCTTCTCTCCGAC
TCTTTTCCCTACAAGGAAACTGAGAATGGGATTCTGTGGGAAGTTGAGGG
AAAGTGGGTTGTACAAGGAGCCGTTGATGTTGACATTGGTGCAAATCCTT
CTGCCGAAGGAGCTGATGAGGATGAGGGTGCTGATGACCACGCCGTGAAA
GTGGTCGACGTCCCCCACCACTCCACGCCACCCGGCCACGCGTTCTACCG
ACACAAGGGACATGACAGAAACAAGACCGAAGTTGATAGCAACCACCCCC
CACGCGCGGCAGAGCAAACAAAACAGCCACCCCCCCAACCACCCTTAATG
AGCCCAAAACAACAGCCACGATCCAACTCCCGGCGAACCTACTCACGCAA
CCCCTACCGCTCCCACCCTACGAGCGCAACACATACAATAGCACACCCAA
GAACAACCACCAACCACACAAACAACAACAACCACGACAACACGCACATC
CCAGCCTCCATAGCACACGCCATGCCGCAGTGCCGGACCCCCACCCCACC
CAATACCAGCCCTAGGCCAGCCGCCGCACACCAAACCCACAGACCACAGA
AGCCGCAAAAACCAAGTAGACCCCACGAACAGCACTACCGAGGTCAACGC
CAGAAGCACCCGGTAGAAACACTCCACGAGACCCCAGACCACACGCACGA
ACCGAGAGCCGCCCGGGACCCGCTA
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