EY684727

Overview
NameEY684727
Unique NameEY684727
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY684727 vs. ExPASy Swiss-Prot
Match: IF5A1_NICPL (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia GN=EIF-5A1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.307e-12
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 1 
Query:    1 LRLPTAQNLLSQIKDGFADRKDLVVTVMSSMGEEQICALKDIGPK 135
            LRLPT  NLL+ IKDGFA+ KDLV++VMS+MGEEQIC +KD+GPK
Sbjct:  115 LRLPTDDNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159
[Close]
BLAST of EY684727 vs. ExPASy Swiss-Prot
Match: IF5A_MAIZE (Eukaryotic translation initiation factor 5A OS=Zea mays GN=TIF5A PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 9.596e-12
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 LRLPTAQNLLSQIKDGFADRKDLVVTVMSSMGEEQICALKDIGPK 135
            LRLPT + L++QIK+GF   KDLVVTV S+MGEEQICALKD+GPK
Sbjct:  116 LRLPTDETLVAQIKEGFESGKDLVVTVQSAMGEEQICALKDVGPK 160
[Close]
BLAST of EY684727 vs. ExPASy Swiss-Prot
Match: IF5A2_SOLLC (Eukaryotic translation initiation factor 5A-2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.138e-11
Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 LRLPTAQNLLSQIKDGFADRKDLVVTVMSSMGEEQICALKDIGPKN 138
            LRLPT +NLL Q+KDGF + KDLVV+VMS+MGEEQI A+KD+G KN
Sbjct:  115 LRLPTDENLLKQVKDGFQEGKDLVVSVMSAMGEEQINAVKDVGTKN 160
[Close]
BLAST of EY684727 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLTU (Eukaryotic translation initiation factor 5A-3 OS=Solanum tuberosum GN=EIF5A3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.762e-11
Identity = 33/46 (71.74%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 LRLPTAQNLLSQIKDGFADRKDLVVTVMSSMGEEQICALKDIGPKN 138
            LRLPT ++LL Q+KDGF + KDLVV+VMS+MGEEQI A+KDIG KN
Sbjct:  115 LRLPTDESLLKQVKDGFQEGKDLVVSVMSAMGEEQINAIKDIGTKN 160
The following BLAST results are available for this feature:
BLAST of EY684727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
IF5A1_NICPL4.307e-1273.33Eukaryotic translation initiation factor 5A-1 OS=N... [more]
IF5A_MAIZE9.596e-1273.33Eukaryotic translation initiation factor 5A OS=Zea... [more]
IF5A2_SOLLC2.138e-1171.74Eukaryotic translation initiation factor 5A-2 OS=S... [more]
IF5A3_SOLTU4.762e-1171.74Eukaryotic translation initiation factor 5A-3 OS=S... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-002-H03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684727 ID=EY684727; Name=EY684727; organism=Citrus sinensis; type=EST; length=802bp
CTGAGGCTTCCTACCGCTCAAAATCTGCTTAGCCAGATTAAAGATGGGTT
TGCTGACCGAAAAGACCTTGTGGTGACCGTTATGTCGTCAATGGGAGAGG
AGCAGATCTGTGCCCTTAAGGACATTGGTCCTAAGAATTAACTATAATCC
CATGGCATTACCTTTGGCTGATACCAGGAGAACTCTTTCTTATGTTGCCA
ACATGGAGACTATCTACCATCCCTGTCCACAACGAACTTACATTACCGAT
GTATTTTGGCTGAGTATGGAGCTATGGAGGAGCTAGAGGGGAACCCCCGC
CCCCAAAAGCCCCGCCAACAACCCCCCACAAAGCAGACGCCGCCCAGGGG
CCGAACACCAGGATCAGGACAGCCAAGAAACGAAGCAACAGGCAGGGACG
CTGAAGGGGACAGCGAAGAAAAAAGAGACCAACACCCCACAAACCACAAC
AAAATAGCCAGCAACCCAACGAAGCAAAAGGACACAGAAGGGAGACCCAC
CACGCACAACACAGAAGGCCACAGACCCAGCCCACCCCGCCGGCCTGCGC
CGCACCGAAAACCCACGGCAAAAGAACGCCAAGGCGAACGCCGGAGCACA
CAGAACCCGCGAACGCACACAACCGCCGGGCGCCCCCCCACAGGAGAACG
AAGGCAAAGAGAAGGACAACAAAACCGAGCAAACACACGAGCAACGCAGA
AAGAGAAAAAGAAGAAGGCGAACAAGAGAACCAACACCCCATGCCACGGC
GCCCACCCGAGCACCACGACGAGGCCAACATCCACACCACCACGCCCGGA
AG
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