EY684688

Overview
NameEY684688
Unique NameEY684688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684688 vs. ExPASy Swiss-Prot
Match: ARL8B_MACFA (ADP-ribosylation factor-like protein 8B OS=Macaca fascicularis GN=ARL8B PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.476e-59
Identity = 101/156 (64.74%), Postives = 131/156 (83.97%), Query Frame = 2
Query:  104 MGLWEAFLNWLQSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKETKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPASRSELHDLLNKASLNGIPLLVLGNKIDKP*ALSKEDLMEQMGLKSITDRKV 571
            + L    L+W +SLF+K+EMEL+L+GLQ +GKT+ VNVIA+G +SEDMIPTVGFNMRK TKGNVTIK+WD+GGQPR+RSMWERYCR V+AIVY++DAAD + + ASR+ELH+LL+K  L GIP+LVLGNK D P AL ++ L+E+M L +I DR++
Sbjct:    2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRYRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREI 157          

HSP 2 Score: 36.1946 bits (82), Expect = 1.476e-59
Identity = 12/27 (44.44%), Postives = 19/27 (70.37%), Query Frame = 1
Query:  571 CCYMISCKNSTNIEKAIDWPVKHSKTK 651
            CCY ISCK   NI+  + W +++SK++
Sbjct:  158 CCYSISCKEKDNIDITLQWLIQYSKSR 184          
BLAST of EY684688 vs. ExPASy Swiss-Prot
Match: ARL8B_PONAB (ADP-ribosylation factor-like protein 8B OS=Pongo abelii GN=ARL8B PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.476e-59
Identity = 101/156 (64.74%), Postives = 130/156 (83.33%), Query Frame = 2
Query:  104 MGLWEAFLNWLQSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKETKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPASRSELHDLLNKASLNGIPLLVLGNKIDKP*ALSKEDLMEQMGLKSITDRKV 571
            + L    L+W +SLF+K+EMEL+L+GLQ +GKT+ VNVIA+G +SEDMIPTVGFNMRK TKGNVTIK+WD+GGQPRFRSMWERYCR V+AIVY++DAA  + + ASR+ELH+LL+K  L GIP+LVLGNK D P AL ++ L+E+M L +I DR++
Sbjct:    2 LALISRLLDWFRSLFWKEEMELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAAYREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQLIEKMNLSAIQDREI 157          

HSP 2 Score: 38.5058 bits (88), Expect = 1.476e-59
Identity = 13/27 (48.15%), Postives = 19/27 (70.37%), Query Frame = 1
Query:  571 CCYMISCKNSTNIEKAIDWPVKHSKTK 651
            CCY ISCK   NI+  + W ++HSK++
Sbjct:  158 CCYSISCKEKDNIDITLQWLIQHSKSR 184          
BLAST of EY684688 vs. ExPASy Swiss-Prot
Match: ARL8_DICDI (ADP-ribosylation factor-like protein 8 OS=Dictyostelium discoideum GN=arl8 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 1.325e-54
Identity = 91/156 (58.33%), Postives = 122/156 (78.21%), Query Frame = 2
Query:  104 MGLWEAFLNWLQSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKETKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPASRSELHDLLNKASLNGIPLLVLGNKIDKP*ALSKEDLMEQMGLKSITDRKV 571
            M  +E+ +N+ +SLF+KQEMEL+L+GLQ +GKT+LVNVI+ GG+ ED IPT+GFNM+K TKGNVTIKLWD+GGQPRFRSMWERYCR V+AIV+VVD+AD +    S+  L DL+NK  L  IPLLV+ NK D P +   +++++ + L+ I  R+V
Sbjct:    1 MNFFESIINFFKSLFWKQEMELTLVGLQGSGKTTLVNVISNGGFIEDTIPTIGFNMKKVTKGNVTIKLWDIGGQPRFRSMWERYCRGVNAIVFVVDSADREKFEQSKQALQDLINKPPLAKIPLLVVANKNDLPNSAGVDEMIQNLDLRGIVGREV 156          

HSP 2 Score: 40.4318 bits (93), Expect = 1.325e-54
Identity = 15/26 (57.69%), Postives = 19/26 (73.08%), Query Frame = 1
Query:  571 CCYMISCKNSTNIEKAIDWPVKHSKT 648
            CCY IS KNS NI+  +DW +KHS +
Sbjct:  157 CCYSISAKNSVNIDITLDWLIKHSSS 182          
BLAST of EY684688 vs. ExPASy Swiss-Prot
Match: ARF3_DROME (ADP-ribosylation factor 3 OS=Drosophila melanogaster GN=Arf51F PE=2 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 1.011e-23
Identity = 53/144 (36.81%), Postives = 83/144 (57.64%), Query Frame = 2
Query:  134 LQSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKETKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPASRSELHDLLNKASLNGIPLLVLGNKIDKP*ALSKEDLMEQMGLKSITDR 565
            L  +F  +EM + ++GL  AGKT+++  +  G  S   IPTVGFN+   T  NV   +WD+GGQ + R +W  Y      +++VVD AD D +  +R+ELH ++N   +    +L+  NK D P A+   ++ E++GL  I DR
Sbjct:    5 LSKIFGNKEMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARTELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDR 147          
BLAST of EY684688 vs. ExPASy Swiss-Prot
Match: ARF6_RAT (ADP-ribosylation factor 6 OS=Rattus norvegicus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.320e-23
Identity = 53/144 (36.81%), Postives = 82/144 (56.94%), Query Frame = 2
Query:  134 LQSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKETKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPASRSELHDLLNKASLNGIPLLVLGNKIDKP*ALSKEDLMEQMGLKSITDR 565
            L  +F  +EM + ++GL  AGKT+++  +  G  S   IPTVGFN+   T  NV   +WD+GGQ + R +W  Y      +++VVD AD D +  +R ELH ++N   +    +L+  NK D P A+   ++ E++GL  I DR
Sbjct:    5 LSKIFGNKEMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDR 147          
BLAST of EY684688 vs. ExPASy Swiss-Prot
Match: ARF6_PIG (ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.320e-23
Identity = 53/144 (36.81%), Postives = 82/144 (56.94%), Query Frame = 2
Query:  134 LQSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKETKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPASRSELHDLLNKASLNGIPLLVLGNKIDKP*ALSKEDLMEQMGLKSITDR 565
            L  +F  +EM + ++GL  AGKT+++  +  G  S   IPTVGFN+   T  NV   +WD+GGQ + R +W  Y      +++VVD AD D +  +R ELH ++N   +    +L+  NK D P A+   ++ E++GL  I DR
Sbjct:    5 LSKIFGNKEMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDR 147          
BLAST of EY684688 vs. ExPASy Swiss-Prot
Match: ARF6_MOUSE (ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.320e-23
Identity = 53/144 (36.81%), Postives = 82/144 (56.94%), Query Frame = 2
Query:  134 LQSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKETKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPASRSELHDLLNKASLNGIPLLVLGNKIDKP*ALSKEDLMEQMGLKSITDR 565
            L  +F  +EM + ++GL  AGKT+++  +  G  S   IPTVGFN+   T  NV   +WD+GGQ + R +W  Y      +++VVD AD D +  +R ELH ++N   +    +L+  NK D P A+   ++ E++GL  I DR
Sbjct:    5 LSKIFGNKEMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDR 147          
BLAST of EY684688 vs. ExPASy Swiss-Prot
Match: ARF6_HUMAN (ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.320e-23
Identity = 53/144 (36.81%), Postives = 82/144 (56.94%), Query Frame = 2
Query:  134 LQSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKETKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPASRSELHDLLNKASLNGIPLLVLGNKIDKP*ALSKEDLMEQMGLKSITDR 565
            L  +F  +EM + ++GL  AGKT+++  +  G  S   IPTVGFN+   T  NV   +WD+GGQ + R +W  Y      +++VVD AD D +  +R ELH ++N   +    +L+  NK D P A+   ++ E++GL  I DR
Sbjct:    5 LSKIFGNKEMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDR 147          
BLAST of EY684688 vs. ExPASy Swiss-Prot
Match: ARF6_CHICK (ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6 PE=2 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 1.320e-23
Identity = 53/144 (36.81%), Postives = 82/144 (56.94%), Query Frame = 2
Query:  134 LQSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKETKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPASRSELHDLLNKASLNGIPLLVLGNKIDKP*ALSKEDLMEQMGLKSITDR 565
            L  +F  +EM + ++GL  AGKT+++  +  G  S   IPTVGFN+   T  NV   +WD+GGQ + R +W  Y      +++VVD AD D +  +R ELH ++N   +    +L+  NK D P A+   ++ E++GL  I DR
Sbjct:    5 LSKIFGNKEMRILMLGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDR 147          
BLAST of EY684688 vs. ExPASy Swiss-Prot
Match: ARF1_SALBA (ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3)

HSP 1 Score: 107.842 bits (268), Expect = 6.552e-23
Identity = 56/154 (36.36%), Postives = 90/154 (58.44%), Query Frame = 2
Query:  104 MGLWEAFLNWLQSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKETKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPASRSELHDLLNKASLNGIPLLVLGNKIDKP*ALSKEDLMEQMGLKSITDR 565
            MGL  +F   L  LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+      N++  +WD+GGQ + R +W  Y +    +++VVD+ D D +  +R ELH +LN+  L    LLV  NK D P A++  ++ +++GL S+  R
Sbjct:    1 MGL--SFTKLLGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQR 151          
The following BLAST results are available for this feature:
BLAST of EY684688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
ARL8B_MACFA1.476e-5964.74ADP-ribosylation factor-like protein 8B OS=Macaca ... [more]
ARL8B_PONAB1.476e-5964.74ADP-ribosylation factor-like protein 8B OS=Pongo a... [more]
ARL8_DICDI1.325e-5458.33ADP-ribosylation factor-like protein 8 OS=Dictyost... [more]
ARF3_DROME1.011e-2336.81ADP-ribosylation factor 3 OS=Drosophila melanogast... [more]
ARF6_RAT1.320e-2336.81ADP-ribosylation factor 6 OS=Rattus norvegicus GN=... [more]
ARF6_PIG1.320e-2336.81ADP-ribosylation factor 6 OS=Sus scrofa GN=ARF6 PE... [more]
ARF6_MOUSE1.320e-2336.81ADP-ribosylation factor 6 OS=Mus musculus GN=Arf6 ... [more]
ARF6_HUMAN1.320e-2336.81ADP-ribosylation factor 6 OS=Homo sapiens GN=ARF6 ... [more]
ARF6_CHICK1.320e-2336.81ADP-ribosylation factor 6 OS=Gallus gallus GN=ARF6... [more]
ARF1_SALBA6.552e-2336.36ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-002-C09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684688 ID=EY684688; Name=EY684688; organism=Citrus sinensis; type=EST; length=763bp
AATTGTAGGAGAAAAGAGAAGAAGCAAGAAAAGTTTTTTCGCTTTTTCCC
AGCTTTTATACTTCAAAGGCGAAACCCTAGCTTCTTATTTTGTCGAATAA
AAGATGGGATTATGGGAAGCTTTTCTCAACTGGCTTCAAAGTCTCTTCTT
TAAACAAGAAATGGAGCTATCTTTGATAGGGCTTCAGAATGCAGGCAAGA
CATCCCTTGTGAATGTTATCGCAACTGGTGGATATAGTGAAGATATGATC
CCAACAGTAGGATTTAATATGAGGAAAGAGACTAAGGGGAATGTCACAAT
AAAGCTGTGGGATCTTGGAGGCCAACCACGGTTTCGCAGTATGTGGGAGA
GATACTGTCGTGCAGTTTCAGCTATTGTTTACGTTGTTGATGCTGCTGAT
TATGATAACTTGCCTGCGTCAAGAAGTGAACTCCATGACTTGTTAAATAA
AGCCTCGCTGAATGGTATCCCATTGCTGGTACTGGGAAACAAGATTGATA
AACCATAAGCCTTGTCTAAAGAGGATCTGATGGAACAAATGGGGCTGAAG
TCCATTACCGATAGAAAAGTTGTTGCTACATGATTTCATGCAAGAACTCT
ACCAACATTGAAAAGGCTATTGATTGGCCTGTAAAGCATTCAAAAACCAA
AGAGTGAAGTTTCTACCCTCTAGTATAGACACCAATGGGAAGCCTGTTAT
ACAGAACTTGGAATTATGGAAAAATTACAAGGAAGATGAATTGGTAAAGG
CACCGTCGCACCA
back to top