EY684688

Overview
NameEY684688
Unique NameEY684688
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684688 vs. ExPASy Swiss-Prot
Match: ARF1_ORYSJ (ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 4.247e-22
Identity = 54/154 (35.06%), Postives = 88/154 (57.14%), Query Frame = 2
Query:  104 MGLWEAFLNWLQSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKETKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPASRSELHDLLNKASLNGIPLLVLGNKIDKP*ALSKEDLMEQMGLKSITDR 565
            MGL   F      LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+      N++  +WD+GGQ + R +W  Y +    +++VVD+ D + +  +R ELH +LN+  L    LLV  NK D P A++  ++ +++GL S+  R
Sbjct:    1 MGL--TFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQR 151          
BLAST of EY684688 vs. ExPASy Swiss-Prot
Match: ARF6_XENLA (ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf6 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 5.546e-22
Identity = 51/141 (36.17%), Postives = 79/141 (56.03%), Query Frame = 2
Query:  143 LFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKETKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPASRSELHDLLNKASLNGIPLLVLGNKIDKP*ALSKEDLMEQMGLKSITDR 565
            +F  +EM + + GL  AGKT+++  +  G  S   IPTVGFN+   T  NV   +WD+GGQ + R +W  Y      +++VVD  D D +  +R ELH ++N   +    +L+  NK D P A+   ++ E++GL  I DR
Sbjct:    8 IFGNKEMRILMRGLDAAGKTTILYKLKLG-QSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCPDRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDR 147          
BLAST of EY684688 vs. ExPASy Swiss-Prot
Match: ARF1_YEAST (ADP-ribosylation factor 1 OS=Saccharomyces cerevisiae GN=ARF1 PE=1 SV=3)

HSP 1 Score: 103.605 bits (257), Expect = 1.236e-21
Identity = 55/154 (35.71%), Postives = 88/154 (57.14%), Query Frame = 2
Query:  104 MGLWEAFLNWLQSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKETKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPASRSELHDLLNKASLNGIPLLVLGNKIDKP*ALSKEDLMEQMGLKSITDR 565
            MGL+ + L    +LF  +EM + ++GL  AGKT+++  +  G      IPT+GFN+      N++  +WD+GGQ R RS+W  Y R    +++VVD+ D   +  +R  +  +LN+  L     LV  NK D P A+S  ++ E++GL SI +R
Sbjct:    1 MGLFASKL--FSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFANKQDLPEAMSAAEITEKLGLHSIRNR 151          
BLAST of EY684688 vs. ExPASy Swiss-Prot
Match: ARF2_YEAST (ADP-ribosylation factor 2 OS=Saccharomyces cerevisiae GN=ARF2 PE=1 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 1.614e-21
Identity = 54/154 (35.06%), Postives = 88/154 (57.14%), Query Frame = 2
Query:  104 MGLWEAFLNWLQSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKETKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPASRSELHDLLNKASLNGIPLLVLGNKIDKP*ALSKEDLMEQMGLKSITDR 565
            MGL+ + L    +LF  +EM + ++GL  AGKT+++  +  G      IPT+GFN+      N++  +WD+GGQ R RS+W  Y R    +++V+D+ D   +  +R  +  +LN+  L     LV  NK D P A+S  ++ E++GL SI +R
Sbjct:    1 MGLYASKL--FSNLFGNKEMRILMVGLDGAGKTTVLYKLKLGEVITT-IPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEITEKLGLHSIRNR 151          
BLAST of EY684688 vs. ExPASy Swiss-Prot
Match: ARF_GIALA (ADP-ribosylation factor OS=Giardia lamblia PE=3 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 2.108e-21
Identity = 52/143 (36.36%), Postives = 84/143 (58.74%), Query Frame = 2
Query:  143 LFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKETKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYD--NLPASRSELHDLLNKASLNGIPLLVLGNKIDKP*ALSKEDLMEQMGLKSITDR 565
            LF K+E+ + ++GL  AGKT+++  +  G      +PT+GFN+      N+   +WD+GGQ   R +W  Y +   A++YV+D+AD +   +  +++ELH LL +  L    LLV  NK D P A+S  DL E++GL+ +  R
Sbjct:   12 LFSKKEVRILMVGLDAAGKTTILYKLMLGEVVTT-VPTIGFNVETVEYKNINFTVWDVGGQDSIRPLWRHYYQNTDALIYVIDSADLEPKRIEDAKNELHTLLGEDELRDAALLVFANKQDLPKAMSTTDLTERLGLQELKKR 153          
BLAST of EY684688 vs. ExPASy Swiss-Prot
Match: ARF1_SCHPO (ADP-ribosylation factor 1 OS=Schizosaccharomyces pombe GN=arf1 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.108e-21
Identity = 51/144 (35.42%), Postives = 85/144 (59.03%), Query Frame = 2
Query:  137 QSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKETKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPASRSELHDLLNKASLNGIPLLVLGNKIDKP*ALSKEDLMEQMGLKSITDRK 568
            QSLF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+      N++  +WD+GGQ + R +W  Y +    I++VVD+ D + +  +  EL  +LN+  L    LLV  NK D P A++  ++ +++GL S+  R+
Sbjct:   10 QSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYRNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDLPNAMNAAEITDKLGLHSLRHRQ 152          
BLAST of EY684688 vs. ExPASy Swiss-Prot
Match: ARF2_SCHPO (Probable ADP-ribosylation factor OS=Schizosaccharomyces pombe GN=SPBC1539.08 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.753e-21
Identity = 53/152 (34.87%), Postives = 84/152 (55.26%), Query Frame = 2
Query:  110 LWEAFLNWLQSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKETKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPASRSELHDLLNKASLNGIPLLVLGNKIDKP*ALSKEDLMEQMGLKSITDR 565
            L++ F      LF  +EM + ++GL  AGKT+++  +     S   IPTVGFN+   T  N+   +WD+GGQ + R +W  Y      +++VVD+AD + +  +R ELH +++   +    LLVL NK D P ALS   + + + L  + DR
Sbjct:    5 LFKGFSKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLN-QSVVTIPTVGFNVETVTYKNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDLPGALSPAQITDVLQLDKLKDR 155          
BLAST of EY684688 vs. ExPASy Swiss-Prot
Match: ARF1_CATRO (ADP-ribosylation factor 1 OS=Catharanthus roseus GN=ARF1 PE=2 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 2.753e-21
Identity = 54/154 (35.06%), Postives = 87/154 (56.49%), Query Frame = 2
Query:  104 MGLWEAFLNWLQSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKETKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPASRSELHDLLNKASLNGIPLLVLGNKIDKP*ALSKEDLMEQMGLKSITDR 565
            MGL  +F      LF K+EM + ++GL  AGKT+++  +  G      IPT+GFN+       ++  +WD+GGQ + R +W  Y +    +++VVD+ D D +  +R ELH +LN+  L    LLV  NK D P A++  ++ ++ GL S+  R
Sbjct:    1 MGL--SFTKLFSRLFAKKEMRILMVGLDAAGKTTILYQLKLGEIVTT-IPTIGFNVETVEYQYISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKHGLHSLRQR 151          
BLAST of EY684688 vs. ExPASy Swiss-Prot
Match: ARF_ASHGO (ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1 PE=3 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 3.595e-21
Identity = 52/149 (34.90%), Postives = 83/149 (55.70%), Query Frame = 2
Query:  119 AFLNWLQSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKETKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPASRSELHDLLNKASLNGIPLLVLGNKIDKP*ALSKEDLMEQMGLKSITDR 565
            +F     +LF  +EM + ++GL  AGKT+++  +  G      IPT+GFN+      N++  +WD+GGQ + R +W  Y R    I++VVD+ D   +  +R  L  +LN+  +    LLV  NK D P A+S  ++ E++GL SI  R
Sbjct:    4 SFSKLFSNLFGHKEMRILMVGLDGAGKTTVLYKLKLGEVVTT-IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFRNTEGIIFVVDSNDRSRIAEAREVLQRMLNEDEIRNAVLLVFANKQDLPEAMSAAEITEKLGLHSIRQR 151          
BLAST of EY684688 vs. ExPASy Swiss-Prot
Match: ARL1_HUMAN (ADP-ribosylation factor-like protein 1 OS=Homo sapiens GN=ARL1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.695e-21
Identity = 54/149 (36.24%), Postives = 83/149 (55.70%), Query Frame = 2
Query:  122 FLNWLQSLFFKQEMELSLIGLQNAGKTSLVNVIATGGYSEDMIPTVGFNMRKETKGNVTIKLWDLGGQPRFRSMWERYCRAVSAIVYVVDAADYDNLPASRSELHDLLNKASLNGIPLLVLGNKIDKP*ALSKEDLMEQMGLKSITDRK 568
            F +   SLF  +EM + ++GL  AGKT+++  +  G      IPT+GFN+   T  N+  ++WDLGGQ   R  W  Y     A++YVVD+ D D +  S+SEL  +L +  L    L+V  NK D   A++  ++   +GL ++ DRK
Sbjct:    5 FSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRK 152          
The following BLAST results are available for this feature:
BLAST of EY684688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211
Match NameE-valueIdentityDescription
ARF1_ORYSJ4.247e-2235.06ADP-ribosylation factor 1 OS=Oryza sativa subsp. j... [more]
ARF6_XENLA5.546e-2236.17ADP-ribosylation factor 6 OS=Xenopus laevis GN=arf... [more]
ARF1_YEAST1.236e-2135.71ADP-ribosylation factor 1 OS=Saccharomyces cerevis... [more]
ARF2_YEAST1.614e-2135.06ADP-ribosylation factor 2 OS=Saccharomyces cerevis... [more]
ARF_GIALA2.108e-2136.36ADP-ribosylation factor OS=Giardia lamblia PE=3 SV... [more]
ARF1_SCHPO2.108e-2135.42ADP-ribosylation factor 1 OS=Schizosaccharomyces p... [more]
ARF2_SCHPO2.753e-2134.87Probable ADP-ribosylation factor OS=Schizosaccharo... [more]
ARF1_CATRO2.753e-2135.06ADP-ribosylation factor 1 OS=Catharanthus roseus G... [more]
ARF_ASHGO3.595e-2134.90ADP-ribosylation factor OS=Ashbya gossypii GN=ARF1... [more]
ARL1_HUMAN4.695e-2136.24ADP-ribosylation factor-like protein 1 OS=Homo sap... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-002-C09-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684688 ID=EY684688; Name=EY684688; organism=Citrus sinensis; type=EST; length=763bp
AATTGTAGGAGAAAAGAGAAGAAGCAAGAAAAGTTTTTTCGCTTTTTCCC
AGCTTTTATACTTCAAAGGCGAAACCCTAGCTTCTTATTTTGTCGAATAA
AAGATGGGATTATGGGAAGCTTTTCTCAACTGGCTTCAAAGTCTCTTCTT
TAAACAAGAAATGGAGCTATCTTTGATAGGGCTTCAGAATGCAGGCAAGA
CATCCCTTGTGAATGTTATCGCAACTGGTGGATATAGTGAAGATATGATC
CCAACAGTAGGATTTAATATGAGGAAAGAGACTAAGGGGAATGTCACAAT
AAAGCTGTGGGATCTTGGAGGCCAACCACGGTTTCGCAGTATGTGGGAGA
GATACTGTCGTGCAGTTTCAGCTATTGTTTACGTTGTTGATGCTGCTGAT
TATGATAACTTGCCTGCGTCAAGAAGTGAACTCCATGACTTGTTAAATAA
AGCCTCGCTGAATGGTATCCCATTGCTGGTACTGGGAAACAAGATTGATA
AACCATAAGCCTTGTCTAAAGAGGATCTGATGGAACAAATGGGGCTGAAG
TCCATTACCGATAGAAAAGTTGTTGCTACATGATTTCATGCAAGAACTCT
ACCAACATTGAAAAGGCTATTGATTGGCCTGTAAAGCATTCAAAAACCAA
AGAGTGAAGTTTCTACCCTCTAGTATAGACACCAATGGGAAGCCTGTTAT
ACAGAACTTGGAATTATGGAAAAATTACAAGGAAGATGAATTGGTAAAGG
CACCGTCGCACCA
back to top