EY684658

Overview
NameEY684658
Unique NameEY684658
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684658 vs. ExPASy Swiss-Prot
Match: TBB3_ANEPH (Tubulin beta-3 chain (Fragment) OS=Anemia phyllitidis GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.720e-28
Identity = 56/153 (36.60%), Postives = 90/153 (58.82%), Query Frame = 3
Query:   12 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQXVDWCPTXFKCGINYQPP 470
            A+YDIC R+L +  PT+ +LN L+S  +S +T  LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +   V+W P   K  +   PP
Sbjct:    2 ALYDICFRTLKLVTPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQLINVQNKNSSYFVEWIPNNVKSSVCDIPP 154          
BLAST of EY684658 vs. ExPASy Swiss-Prot
Match: TBB1_WHEAT (Tubulin beta-1 chain OS=Triticum aestivum GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.720e-28
Identity = 55/153 (35.95%), Postives = 90/153 (58.82%), Query Frame = 3
Query:   12 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQXVDWCPTXFKCGINYQPP 470
            A+YDIC R+L +  P++ +LN L+S  +S +T  LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +   V+W P   K  +   PP
Sbjct:  206 ALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQMYRPLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP 358          
BLAST of EY684658 vs. ExPASy Swiss-Prot
Match: TBB1_VOLCA (Tubulin beta chain OS=Volvox carteri GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.720e-28
Identity = 55/153 (35.95%), Postives = 90/153 (58.82%), Query Frame = 3
Query:   12 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQXVDWCPTXFKCGINYQPP 470
            A+YDIC R+L +  PT+ +LN L+S V+S +T  LRF G LN D+ +   NL+P+PR+HF +  + P+ S     +  L+V E+T   ++  +MM   DPRHG+Y+    ++RG +  K+V+  +  ++ K +   V+W P   K  +   PP
Sbjct:  206 ALYDICFRTLKLTTPTFGDLNHLISAVMSGITCCLRFPGQLNADLRKLAVNLIPFPRLHFFMVGFTPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPP 358          
BLAST of EY684658 vs. ExPASy Swiss-Prot
Match: TBB1_GEOCN (Tubulin beta-1 chain OS=Geotrichum candidum PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 3.720e-28
Identity = 57/153 (37.25%), Postives = 93/153 (60.78%), Query Frame = 3
Query:   12 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQXVDWCPTXFKCGINYQPP 470
            A+YDIC+ +L +++PT+ +LN+LVS V+S +T  LRF G LN D+ +   NLVP+PR+HF +  YAP+ +  +     L+V E+T   F+  +MMA  DP+ G+Y+     +RG V  K+V   + +++ + +   V+W P   +  I   PP
Sbjct:  206 ALYDICQHTLKLKQPTHADLNQLVSGVMSGITTCLRFPGQLNSDLRKLAVNLVPFPRLHFFMVGYAPLSAPGQQSFRSLTVPELTQQLFDSKNMMAASDPKRGRYLTVAAFFRGKVSIKEVEDQMRSVQERNSAYFVEWIPNNVQTAICSVPP 358          
BLAST of EY684658 vs. ExPASy Swiss-Prot
Match: TBB_MELLI (Tubulin beta chain OS=Melampsora lini GN=TUB1 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.859e-28
Identity = 56/141 (39.72%), Postives = 90/141 (63.83%), Query Frame = 3
Query:   12 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQXVDWCP 434
            A+YDIC R+L ++ PTY +LN LVS V+S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ +     +  ++V E+T+  F+  +MMA  DPRHG+Y+     +RG V  K+V   + ++++K +   V+W P
Sbjct:  206 ALYDICFRTLKLQTPTYGDLNHLVSIVMSGITTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTARGSQQYRAVTVPELTSQMFDAKNMMAASDPRHGRYLTVAAYFRGKVSMKEVEENMLSVQSKNSNYFVEWIP 346          
BLAST of EY684658 vs. ExPASy Swiss-Prot
Match: TBB_ERYGR (Tubulin beta chain OS=Erysiphe graminis subsp. hordei GN=TUB2 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.859e-28
Identity = 58/153 (37.91%), Postives = 90/153 (58.82%), Query Frame = 3
Query:   12 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQXVDWCPTXFKCGINYQPP 470
            A+YDIC R+L +  P+Y +LN LVS V+S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S        ++V E+T   F+P +MMA  D R+G+Y+ C  ++RG V  K+V   +  ++ K     V+W P   +  +   PP
Sbjct:  206 ALYDICMRTLKLSNPSYGDLNHLVSAVMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAHSFRAVTVPELTQQMFDPKNMMAASDFRNGRYLTCSAIFRGKVSMKEVEDQMRNVQQKNVSYFVEWIPNNVQTALCSIPP 358          
BLAST of EY684658 vs. ExPASy Swiss-Prot
Match: TBB_COCHE (Tubulin beta chain OS=Cochliobolus heterostrophus GN=TUB1 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.859e-28
Identity = 58/153 (37.91%), Postives = 90/153 (58.82%), Query Frame = 3
Query:   12 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQXVDWCPTXFKCGINYQPP 470
            A+YDIC R+L +  P+Y +LN LVS V+S +T  LRF G LN D+ +   N+VP+PR+HF +  +AP+ S        ++V E+T   F+P +MMA  D R+G+Y+ C   +RG V  K+V   +  ++ K +   V+W P   +  +   PP
Sbjct:  206 ALYDICMRTLKLNNPSYGDLNHLVSAVMSGVTTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMVGFAPLTSRGAHSFRAVTVPELTQQMFDPKNMMAASDFRNGRYLTCSAYFRGKVSMKEVEDQMRNVQNKNSSYFVEWIPNNVQTALCSIPP 358          
BLAST of EY684658 vs. ExPASy Swiss-Prot
Match: TBB_CICAR (Tubulin beta chain OS=Cicer arietinum GN=TUBB PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.859e-28
Identity = 55/153 (35.95%), Postives = 90/153 (58.82%), Query Frame = 3
Query:   12 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQXVDWCPTXFKCGINYQPP 470
            A+YDIC R+L +  P++ +LN L+S  +S +T  LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  L+V E+T   ++  +MM   DPRHG+Y+    M+RG +  K+V+  +  ++ K +   V+W P   K  +   PP
Sbjct:  208 ALYDICFRTLKLSTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYVSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQIINVQNKNSSYFVEWIPNNVKSSVCDIPP 360          
BLAST of EY684658 vs. ExPASy Swiss-Prot
Match: TBB9_ARATH (Tubulin beta-9 chain OS=Arabidopsis thaliana GN=TUBB9 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.859e-28
Identity = 67/198 (33.84%), Postives = 103/198 (52.02%), Query Frame = 3
Query:   12 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQXVDWCPTXFKCGINYQPPTVVPGGDLAKVHRADGMISKSGSGAETLSRIRHPFHLPVATAGFR 605
            A+YDIC R+L +  PT+ +LN L+S  +S +T  LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  LSV E+T   ++  +MM   DPRHG+Y+    ++RG +  K+V+  +  ++ K +   V+W P   K  +    PT         +  A   I  S S  E   R+   F     TA FR
Sbjct:  206 ALYDICFRTLKLANPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSALSVPELTQQMWDAKNMMCAADPRHGRYLTASAVFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPNNVKSSVCDIAPT--------GLKMASTFIGNSTSIQEMFRRVSEQF-----TAMFR 390          
BLAST of EY684658 vs. ExPASy Swiss-Prot
Match: TBB4_ARATH (Tubulin beta-4 chain OS=Arabidopsis thaliana GN=TUBB4 PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 4.859e-28
Identity = 68/198 (34.34%), Postives = 104/198 (52.53%), Query Frame = 3
Query:   12 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQXVDWCPTXFKCGINYQPPTVVPGGDLAKVHRADGMISKSGSGAETLSRIRHPFHLPVATAGFR 605
            A+YDIC R+L +  PT+ +LN L+S  +S +T  LRF G LN D+ +   NL+P+PR+HF +  +AP+ S     +  LSV E+T   ++  +MM   DPRHG+Y+    ++RG +  K+V+  +  I+ K +   V+W P   K  +      + P G    +  A   I  S S  E   R+   F     TA FR
Sbjct:  206 ALYDICFRTLKLANPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSALSVPELTQQMWDAKNMMCAADPRHGRYLTASAVFRGKLSTKEVDEQMMNIQNKNSSYFVEWIPNNVKSSV----CDIAPKG----LKMASTFIGNSTSIQEMFRRVSEQF-----TAMFR 390          
The following BLAST results are available for this feature:
BLAST of EY684658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
TBB3_ANEPH3.720e-2836.60Tubulin beta-3 chain (Fragment) OS=Anemia phylliti... [more]
TBB1_WHEAT3.720e-2835.95Tubulin beta-1 chain OS=Triticum aestivum GN=TUBB1... [more]
TBB1_VOLCA3.720e-2835.95Tubulin beta chain OS=Volvox carteri GN=TUBB1 PE=3... [more]
TBB1_GEOCN3.720e-2837.25Tubulin beta-1 chain OS=Geotrichum candidum PE=3 S... [more]
TBB_MELLI4.859e-2839.72Tubulin beta chain OS=Melampsora lini GN=TUB1 PE=3... [more]
TBB_ERYGR4.859e-2837.91Tubulin beta chain OS=Erysiphe graminis subsp. hor... [more]
TBB_COCHE4.859e-2837.91Tubulin beta chain OS=Cochliobolus heterostrophus ... [more]
TBB_CICAR4.859e-2835.95Tubulin beta chain OS=Cicer arietinum GN=TUBB PE=2... [more]
TBB9_ARATH4.859e-2833.84Tubulin beta-9 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB4_ARATH4.859e-2834.34Tubulin beta-4 chain OS=Arabidopsis thaliana GN=TU... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-015-G11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684658 ID=EY684658; Name=EY684658; organism=Citrus sinensis; type=EST; length=869bp
CCACGCGTCCGGCCATCTATGATATCTGCAGGCGCTCTCTTGACATTGAG
CGCCCCACTTACACCAATCTCAACCGACTTGTCTCTCAGGTGATCTCATC
CCTCACTGCCTCTTTGAGGTTTGATGGAGCTCTGAATGTGGATGTGACTG
AGTTCCAGACCAATTTGGTTCCCTATCCAAGGATCCATTTCATGCTCTCC
TCTTATGCCCCAGTTATCTCTGCAGAGAAGGCATTCCATGAGCAACTTTC
AGTTGCTGAGATCACCAACAGTGCTTTTGAGCCATCATCCATGATGGCCA
AATGTGACCCTCGTCATGGCAAGTATATGGCCTGCTGTTTGATGTATCGT
GGTGATGTTGTGCCTAAGGATGTGAATGCAGCTGTGGCCACCATCAAGAC
CAAGCGCACAATTCAGNTTGTTGACTGGTGCCCTACTGNATTCAAGTGTG
GTATCAACTATCAGCCACCAACTGTGGTCCCTGGCGGTGACCTTGCCAAG
GTGCACAGGGCTGACGGCATGATTTCCAAATCCGGCAGCGGGGCGGAGAC
GCTGTCGCGCATAAGACATCCGTTCCACCTACCCGTTGCCACAGCCGGCT
TCCGTGCCACAGACAAGCCGCCCACCCAAACCAAACACCCGACCGGACCC
CCACCACCACCGAAACCCCCCAACCGCACCCACCACGAGGAAGGGGCACG
GGGCGGGACACGGAAAGAGCCGACCATAAAAGACGCGACCGTGCCGAGAC
TGAGCAGCCGCAAGGAGGATCGGTCGGCACGCCGGGTGCGCTGGGTGGAC
AGCCCGGGCGTGGCACAGACGAGAGCGCGCCAGGGCGCCAGTCTGACCAC
CGAGGCGAACAGGAGGAGA
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